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Tan0001925 (gene) of Snake gourd v1 genome

Gene IDTan0001925
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG07:10661159..10661719
RNA-Seq ExpressionTan0001925
SyntenyTan0001925
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025354.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.4e-5975Show/hide
Query:  MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVR--NKGKTFVHEDHTQHSTSIASLSPYTKRIDNLRMPNGYQPP
        MSVM+TD   SE+RM   EKK+N+L+K VEERD+EIA LKN IESRDAAESS TH ++  NKGK  + E   Q+STSIASLS   + IDN+RMP+GYQPP
Subjt:  MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVR--NKGKTFVHEDHTQHSTSIASLSPYTKRIDNLRMPNGYQPP

Query:  KFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE
        KFQQFDGK NPKQH+AHFIETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLEPE IDSWE
Subjt:  KFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]5.8e-6167.55Show/hide
Query:  MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVR--NKGKTFVHEDHTQHSTSIASLS------------------
        MSVM+TD   SE+RM   EKK+NML+KAVEERD+EIA LKN IESRDAAESS TH ++  NKGK  + E   Q+STSIASLS                  
Subjt:  MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVR--NKGKTFVHEDHTQHSTSIASLS------------------

Query:  ----------PYTKRIDNLRMPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE
                  PYTKRIDN+RMP+GYQPPKFQQFDGK NPKQH+AHFIETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLEPE IDSWE
Subjt:  ----------PYTKRIDNLRMPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE

KAA0057696.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-6067.55Show/hide
Query:  MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVR--NKGKTFVHEDHTQHSTSIASLS------------------
        MSVM+TD   SE+RM   EKK+NML+KAVEERD+EIASLKN IESRDAAESS TH ++  NKGK  + E   Q+STSIASLS                  
Subjt:  MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVR--NKGKTFVHEDHTQHSTSIASLS------------------

Query:  ----------PYTKRIDNLRMPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE
                  PYTKRIDN+RMP+ YQPPKFQQFDGK NPKQH+AHFIETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLEPE IDSWE
Subjt:  ----------PYTKRIDNLRMPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE

KAA0059562.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.2e-5967.02Show/hide
Query:  MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVRN--KGKTFVHEDHTQHSTSIASLS------------------
        MSVM+T+   SE RM   EKK+NML+K VEERDYEIA LKN IESRDAAESS  H V+N  KGK  + E   Q+STSIASLS                  
Subjt:  MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVRN--KGKTFVHEDHTQHSTSIASLS------------------

Query:  ----------PYTKRIDNLRMPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE
                  PYTKRIDNLRMPNGYQPPKFQQFDGK NPKQH+AHFIETCE AGTRGDLLVKQFVRTLKGNAFDWY DLEPE ID+WE
Subjt:  ----------PYTKRIDNLRMPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE

TYK18586.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.3e-6067.55Show/hide
Query:  MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVRN--KGKTFVHEDHTQHSTSIASLS------------------
        MSVM+TD   SE+RM   EKK+NML+K VEERDYEIA LKN IESRDAAESS  H V+N  KGK  + E   Q+STSIASLS                  
Subjt:  MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVRN--KGKTFVHEDHTQHSTSIASLS------------------

Query:  ----------PYTKRIDNLRMPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE
                  PYTKRIDNLRMPNGYQPPKFQQFDGK NPKQH+AHFIETCE AGTRGDLLVKQFVRTLKGNAFDWY DLEPE ID+WE
Subjt:  ----------PYTKRIDNLRMPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE

TrEMBL top hitse value%identityAlignment
A0A5A7SI89 Ty3-gypsy retrotransposon protein1.2e-5975Show/hide
Query:  MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVR--NKGKTFVHEDHTQHSTSIASLSPYTKRIDNLRMPNGYQPP
        MSVM+TD   SE+RM   EKK+N+L+K VEERD+EIA LKN IESRDAAESS TH ++  NKGK  + E   Q+STSIASLS   + IDN+RMP+GYQPP
Subjt:  MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVR--NKGKTFVHEDHTQHSTSIASLSPYTKRIDNLRMPNGYQPP

Query:  KFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE
        KFQQFDGK NPKQH+AHFIETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLEPE IDSWE
Subjt:  KFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE

A0A5A7TZU9 Ribonuclease H2.8e-6167.55Show/hide
Query:  MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVR--NKGKTFVHEDHTQHSTSIASLS------------------
        MSVM+TD   SE+RM   EKK+NML+KAVEERD+EIA LKN IESRDAAESS TH ++  NKGK  + E   Q+STSIASLS                  
Subjt:  MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVR--NKGKTFVHEDHTQHSTSIASLS------------------

Query:  ----------PYTKRIDNLRMPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE
                  PYTKRIDN+RMP+GYQPPKFQQFDGK NPKQH+AHFIETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLEPE IDSWE
Subjt:  ----------PYTKRIDNLRMPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE

A0A5A7UU70 Ty3-gypsy retrotransposon protein8.1e-6167.55Show/hide
Query:  MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVR--NKGKTFVHEDHTQHSTSIASLS------------------
        MSVM+TD   SE+RM   EKK+NML+KAVEERD+EIASLKN IESRDAAESS TH ++  NKGK  + E   Q+STSIASLS                  
Subjt:  MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVR--NKGKTFVHEDHTQHSTSIASLS------------------

Query:  ----------PYTKRIDNLRMPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE
                  PYTKRIDN+RMP+ YQPPKFQQFDGK NPKQH+AHFIETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLEPE IDSWE
Subjt:  ----------PYTKRIDNLRMPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE

A0A5A7UUI7 Ty3-gypsy retrotransposon protein1.5e-5967.02Show/hide
Query:  MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVRN--KGKTFVHEDHTQHSTSIASLS------------------
        MSVM+T+   SE RM   EKK+NML+K VEERDYEIA LKN IESRDAAESS  H V+N  KGK  + E   Q+STSIASLS                  
Subjt:  MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVRN--KGKTFVHEDHTQHSTSIASLS------------------

Query:  ----------PYTKRIDNLRMPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE
                  PYTKRIDNLRMPNGYQPPKFQQFDGK NPKQH+AHFIETCE AGTRGDLLVKQFVRTLKGNAFDWY DLEPE ID+WE
Subjt:  ----------PYTKRIDNLRMPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE

A0A5D3D4X3 Ty3-gypsy retrotransposon protein4.0e-6067.55Show/hide
Query:  MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVRN--KGKTFVHEDHTQHSTSIASLS------------------
        MSVM+TD   SE+RM   EKK+NML+K VEERDYEIA LKN IESRDAAESS  H V+N  KGK  + E   Q+STSIASLS                  
Subjt:  MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVRN--KGKTFVHEDHTQHSTSIASLS------------------

Query:  ----------PYTKRIDNLRMPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE
                  PYTKRIDNLRMPNGYQPPKFQQFDGK NPKQH+AHFIETCE AGTRGDLLVKQFVRTLKGNAFDWY DLEPE ID+WE
Subjt:  ----------PYTKRIDNLRMPNGYQPPKFQQFDGKSNPKQHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGTTATGATGACTGATGCAGGCATTAGTGAAGAAAGAATGGTTGGATTTGAAAAGAAGATCAACATGTTATTGAAGGCAGTTGAGGAAAGAGATTATGAAATCGC
TTCTCTCAAGAATCAGATCGAAAGTCGGGATGCTGCTGAATCAAGTCAAACCCATGCTGTCAGAAATAAGGGAAAGACCTTTGTACATGAAGATCATACACAACATTCCA
CTTCAATTGCTTCATTATCTCCATATACTAAGAGAATTGACAACCTAAGAATGCCTAATGGATACCAGCCGCCAAAGTTTCAACAATTCGACGGGAAGAGCAATCCCAAA
CAACACATTGCTCACTTCATTGAGACATGTGAAAATGCTGGTACTAGAGGAGATCTGCTAGTCAAACAATTCGTTCGAACCTTGAAAGGAAATGCTTTTGACTGGTATAC
TGACCTCGAGCCAGAGATTATTGACAGTTGGGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCGTTATGATGACTGATGCAGGCATTAGTGAAGAAAGAATGGTTGGATTTGAAAAGAAGATCAACATGTTATTGAAGGCAGTTGAGGAAAGAGATTATGAAATCGC
TTCTCTCAAGAATCAGATCGAAAGTCGGGATGCTGCTGAATCAAGTCAAACCCATGCTGTCAGAAATAAGGGAAAGACCTTTGTACATGAAGATCATACACAACATTCCA
CTTCAATTGCTTCATTATCTCCATATACTAAGAGAATTGACAACCTAAGAATGCCTAATGGATACCAGCCGCCAAAGTTTCAACAATTCGACGGGAAGAGCAATCCCAAA
CAACACATTGCTCACTTCATTGAGACATGTGAAAATGCTGGTACTAGAGGAGATCTGCTAGTCAAACAATTCGTTCGAACCTTGAAAGGAAATGCTTTTGACTGGTATAC
TGACCTCGAGCCAGAGATTATTGACAGTTGGGAATAA
Protein sequenceShow/hide protein sequence
MSVMMTDAGISEERMVGFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTHAVRNKGKTFVHEDHTQHSTSIASLSPYTKRIDNLRMPNGYQPPKFQQFDGKSNPK
QHIAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPEIIDSWE