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Tan0001939 (gene) of Snake gourd v1 genome

Gene IDTan0001939
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionstructure-specific endonuclease subunit slx1
Genome locationLG04:82449284..82453522
RNA-Seq ExpressionTan0001939
SyntenyTan0001939
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0033557 - Slx1-Slx4 complex (cellular component)
GO:0008821 - crossover junction endodeoxyribonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domainsIPR000305 - GIY-YIG endonuclease
IPR035901 - GIY-YIG endonuclease superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151512.1 structure-specific endonuclease subunit SLX1 [Cucumis sativus]1.3e-7181.5Show/hide
Query:  MRLLSQTFRCQKSPISNPEVSKPSSSSTKDPSPATLIVKSKPKP--KKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACT
        MRLLS TFRC K PISNP +SK SSSS+KDP   TLIVKS+PKP  K+WCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACT
Subjt:  MRLLSQTFRCQKSPISNPEVSKPSSSSTKDPSPATLIVKSKPKP--KKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACT

Query:  IHGFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQLDTF
        IHGF+DQSQACEFESKWK+VSRK+S ++KE+D+GK +DDQTLRLLK R+RAL KVKCLF+ SQF+FDW+LD F
Subjt:  IHGFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQLDTF

XP_008461838.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo]7.9e-7281.98Show/hide
Query:  MRLLSQTFRCQKSPISNPEVSKPSSSSTKDPSPATLIVK-SKPKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTI
        MRLLSQTFRCQK PISNP + K SSSSTK P   TLIVK  +PKPK+WCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICACTI
Subjt:  MRLLSQTFRCQKSPISNPEVSKPSSSSTKDPSPATLIVK-SKPKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTI

Query:  HGFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQLDTF
        HGF+DQSQACEFESKWK+VSRK+S ++KEDD+GKQ+D+QTLRLLK RQRAL KVKCLF+ S F+FDW+LD F
Subjt:  HGFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQLDTF

XP_022152567.1 structure-specific endonuclease subunit SLX1 [Momordica charantia]3.8e-6677.78Show/hide
Query:  MRLLSQTFRCQKSPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIH
        MRLLS TFRC KSPISNP+ S  SSSSTKDPS ATL  +S+ KPK WCVYLIISSNSP KTYVGVTL+F RRLKQHNGEIKGGAKATRAGRPW+CAC IH
Subjt:  MRLLSQTFRCQKSPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIH

Query:  GFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQLDTF
        GF+DQSQACEFESKWKEVSRK++ KRK+DD  +Q D+Q LRLLK RQRALEKVK +F+ S+F+FD QLD F
Subjt:  GFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQLDTF

XP_022934184.1 structure-specific endonuclease subunit slx1 [Cucurbita moschata]3.8e-6680.47Show/hide
Query:  MRLLSQTFRCQKSPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIH
        MRLLSQTFR QK PIS+PEVSK SSSSTK P   TLIVKS+P+PKKWCVYLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICAC IH
Subjt:  MRLLSQTFRCQKSPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIH

Query:  GFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQLD
        GF+DQSQACEFESKWKE+ RKM   RKE     +VDD TLRLLK+RQRAL KVK LF+ +QF+FDW+LD
Subjt:  GFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQLD

XP_038903984.1 structure-specific endonuclease subunit slx1 isoform X1 [Benincasa hispida]2.1e-7283.04Show/hide
Query:  MRLLSQTFRCQKSPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIH
        MRLLSQTFR QK   SN ++SK SSSSTKDP    LIVKS+PKPK+WCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATR GRPW+CACTIH
Subjt:  MRLLSQTFRCQKSPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIH

Query:  GFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQLDTF
        GF+DQ QACEFESKWKEVSRK+S K+KEDDMGKQVDDQTLRLLK RQRAL KVKCLF+ SQF+F+W+LD F
Subjt:  GFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQLDTF

TrEMBL top hitse value%identityAlignment
A0A0A0LCZ9 GIY-YIG domain-containing protein6.5e-7281.5Show/hide
Query:  MRLLSQTFRCQKSPISNPEVSKPSSSSTKDPSPATLIVKSKPKP--KKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACT
        MRLLS TFRC K PISNP +SK SSSS+KDP   TLIVKS+PKP  K+WCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACT
Subjt:  MRLLSQTFRCQKSPISNPEVSKPSSSSTKDPSPATLIVKSKPKP--KKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACT

Query:  IHGFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQLDTF
        IHGF+DQSQACEFESKWK+VSRK+S ++KE+D+GK +DDQTLRLLK R+RAL KVKCLF+ SQF+FDW+LD F
Subjt:  IHGFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQLDTF

A0A1S3CFH5 structure-specific endonuclease subunit slx13.8e-7281.98Show/hide
Query:  MRLLSQTFRCQKSPISNPEVSKPSSSSTKDPSPATLIVK-SKPKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTI
        MRLLSQTFRCQK PISNP + K SSSSTK P   TLIVK  +PKPK+WCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICACTI
Subjt:  MRLLSQTFRCQKSPISNPEVSKPSSSSTKDPSPATLIVK-SKPKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTI

Query:  HGFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQLDTF
        HGF+DQSQACEFESKWK+VSRK+S ++KEDD+GKQ+D+QTLRLLK RQRAL KVKCLF+ S F+FDW+LD F
Subjt:  HGFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQLDTF

A0A6J1DGL6 structure-specific endonuclease subunit SLX11.8e-6677.78Show/hide
Query:  MRLLSQTFRCQKSPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIH
        MRLLS TFRC KSPISNP+ S  SSSSTKDPS ATL  +S+ KPK WCVYLIISSNSP KTYVGVTL+F RRLKQHNGEIKGGAKATRAGRPW+CAC IH
Subjt:  MRLLSQTFRCQKSPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIH

Query:  GFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQLDTF
        GF+DQSQACEFESKWKEVSRK++ KRK+DD  +Q D+Q LRLLK RQRALEKVK +F+ S+F+FD QLD F
Subjt:  GFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQLDTF

A0A6J1F1V2 structure-specific endonuclease subunit slx11.8e-6680.47Show/hide
Query:  MRLLSQTFRCQKSPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIH
        MRLLSQTFR QK PIS+PEVSK SSSSTK P   TLIVKS+P+PKKWCVYLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICAC IH
Subjt:  MRLLSQTFRCQKSPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIH

Query:  GFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQLD
        GF+DQSQACEFESKWKE+ RKM   RKE     +VDD TLRLLK+RQRAL KVK LF+ +QF+FDW+LD
Subjt:  GFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQLD

A0A6J1J5C9 structure-specific endonuclease subunit slx1 isoform X13.1e-6678.95Show/hide
Query:  MRLLSQTFRCQKSPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIH
        MRLLSQTFR QK PIS+PEVSK SSSSTK P   TL +KS+P+ KKWCVYLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICAC IH
Subjt:  MRLLSQTFRCQKSPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIH

Query:  GFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQLDTF
        GF++QSQACEFESKWKE+ RKMS  RKE     +VDDQTLRLLK+RQRAL KVK LF+ +QF+FDW+LD F
Subjt:  GFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQLDTF

SwissProt top hitse value%identityAlignment
A8PWH1 Structure-specific endonuclease subunit SLX18.9e-1040.54Show/hide
Query:  PKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFEDQSQACEFESKWKE
        P+ +  Y + S + P +TY+G T D  RRL+QHNG +K GA  TR  RPW     ++GF  +  A +FE  W++
Subjt:  PKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFEDQSQACEFESKWKE

B6JY16 Structure-specific endonuclease subunit slx13.9e-1341.05Show/hide
Query:  WCVYLIISSNSPIKT-YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTL
        +C YL++S  +  ++ Y+G T D  RRL+QHNGEIKGGA  T+  RPW  AC +HGF  +  A +FE  W+       D  ++      V  QTL
Subjt:  WCVYLIISSNSPIKT-YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTL

B6QFH5 Structure-specific endonuclease subunit slx18.1e-1145Show/hide
Query:  KPKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACTIHGFEDQSQACEFESKWKEV
        KP P  +C YL+ S   P   Y+G T D  RRL+QHNG  KGGAK T     RPW     I GF  ++ A +FE  W+ V
Subjt:  KPKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACTIHGFEDQSQACEFESKWKEV

B8MDD1 Structure-specific endonuclease subunit slx12.1e-1143.37Show/hide
Query:  VKSKPKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACTIHGFEDQSQACEFESKWKEV
        V +KP P  +C YL+ S+  P   Y+G T D  RRL+QHNG  KGGAK T     RPW     + GF  ++ A +FE  W+ V
Subjt:  VKSKPKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACTIHGFEDQSQACEFESKWKEV

Q9P7M3 Structure-specific endonuclease subunit slx19.5e-1243.9Show/hide
Query:  WCVYLIIS--SNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFEDQSQACEFESKWKE--VSRKMSD
        +C YL+ S  + S    Y+G T D  RRL+QHNGEI GGA  T+ GRPW  +C ++GF ++  A +FE  W+   +SR   D
Subjt:  WCVYLIIS--SNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFEDQSQACEFESKWKE--VSRKMSD

Arabidopsis top hitse value%identityAlignment
AT2G30350.2 Excinuclease ABC, C subunit, N-terminal1.3e-0843.86Show/hide
Query:  KTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFEDQSQACEFESKWK
        +TY+G T++  RR++QHNGEI  GA  T+  RPW     I+GF     A +FE  W+
Subjt:  KTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFEDQSQACEFESKWK

AT5G43210.1 Excinuclease ABC, C subunit, N-terminal8.8e-3749.71Show/hide
Query:  RLLSQTFRCQKSPISN---PEVSKPSSSSTKDPSPATLIVKSK---PKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWIC
        RLLS+TF   K   SN   PE     +S T+ P P++   +     PK K W VYLI+S+  PIKTYVG+T DF RRLKQHNGEI+GGAKA+ AGRPW+C
Subjt:  RLLSQTFRCQKSPISN---PEVSKPSSSSTKDPSPATLIVKSK---PKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWIC

Query:  ACTIHGFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQL
        AC I GF   SQA  FESKWK  +RK+  ++K++DM      Q+  LL+ R+RAL KV+   + S  + DW++
Subjt:  ACTIHGFEDQSQACEFESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACTGCTCTCTCAGACATTTCGTTGTCAAAAATCCCCAATTTCAAATCCTGAAGTTTCGAAACCTTCTTCTTCGTCAACAAAGGATCCATCACCTGCGACATTGAT
CGTCAAATCAAAGCCTAAGCCTAAGAAATGGTGTGTTTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTACGTTGGGGTCACCCTCGACTTCGATCGACGTTTGA
AACAACATAATGGTGAAATAAAAGGTGGGGCAAAAGCAACTCGAGCAGGACGACCCTGGATCTGTGCGTGCACAATTCATGGTTTTGAAGACCAAAGTCAAGCTTGTGAG
TTTGAATCAAAATGGAAAGAAGTTTCAAGGAAAATGTCCGATAAAAGGAAAGAGGATGATATGGGAAAGCAAGTAGATGATCAGACATTAAGGTTGCTCAAGCGCAGGCA
AAGAGCTCTAGAAAAAGTGAAGTGTCTGTTTAACAGCAGTCAATTTGATTTTGATTGGCAATTGGATACTTTCTGA
mRNA sequenceShow/hide mRNA sequence
GAAGGAACGAGAAATATGAGACTGCTCTCTCAGACATTTCGTTGTCAAAAATCCCCAATTTCAAATCCTGAAGTTTCGAAACCTTCTTCTTCGTCAACAAAGGATCCATC
ACCTGCGACATTGATCGTCAAATCAAAGCCTAAGCCTAAGAAATGGTGTGTTTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTACGTTGGGGTCACCCTCGACT
TCGATCGACGTTTGAAACAACATAATGGTGAAATAAAAGGTGGGGCAAAAGCAACTCGAGCAGGACGACCCTGGATCTGTGCGTGCACAATTCATGGTTTTGAAGACCAA
AGTCAAGCTTGTGAGTTTGAATCAAAATGGAAAGAAGTTTCAAGGAAAATGTCCGATAAAAGGAAAGAGGATGATATGGGAAAGCAAGTAGATGATCAGACATTAAGGTT
GCTCAAGCGCAGGCAAAGAGCTCTAGAAAAAGTGAAGTGTCTGTTTAACAGCAGTCAATTTGATTTTGATTGGCAATTGGATACTTTCTGATATTCTTTACATTGTTGTT
TTTTTTTTAAACAATATTTATCTTTTTATCTTCAATTCTAAGAATTGAATGAAATGAATAGGAGAAGTTGTTTATTAGATAAATGTCCCATTTTCAGAACTATGTTAAAA
GTAGGGGTGAGCAAAATAATCCGACCAAACCGACTTCGATTGGTTGGCCTAACTGTATTTGGTCGGGGTCGGTGACAAAATCAACCTGTTGGTCGGTCAATGAGTTCAAA
AGGGTTCAACAACTCTTCCATGGGAAGACAAATTAAAAACCGTCACCAACCGTCCAACGACTATTCCTGGTTAATAGTAGTTTTTTTTTAAGTTTTAAGTAAAAGCTGAA
ATGTCGGTGGAGAGGTTTTAATTTTATATTTAG
Protein sequenceShow/hide protein sequence
MRLLSQTFRCQKSPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKKWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFEDQSQACE
FESKWKEVSRKMSDKRKEDDMGKQVDDQTLRLLKRRQRALEKVKCLFNSSQFDFDWQLDTF