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Tan0001956 (gene) of Snake gourd v1 genome

Gene IDTan0001956
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG01:90453010..90453975
RNA-Seq ExpressionTan0001956
SyntenyTan0001956
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]2.6e-0666Show/hide
Query:  MTETLSPMLYSTVCTQVEIELPVPDNLPWSAGSSTSLIFCTWMELYRKSI
        MTE LS  LY TVCTQV+IELP+PD LP SA SS S  F TW+ELY +S+
Subjt:  MTETLSPMLYSTVCTQVEIELPVPDNLPWSAGSSTSLIFCTWMELYRKSI
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]9.2e-0453.97Show/hide
Query:  MTETLSPMLYSTVCTQ-----------------VEIELPVPDNLPWSAGSSTSLIFCTWMELY
        MTE LSP LY TVCTQ                 VEIELPVPD LP SA SS S    TW+ELY
Subjt:  MTETLSPMLYSTVCTQ-----------------VEIELPVPDNLPWSAGSSTSLIFCTWMELY
TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]9.2e-0453.97Show/hide
Query:  MTETLSPMLYSTVCTQ-----------------VEIELPVPDNLPWSAGSSTSLIFCTWMELY
        MTE LSP LY TVCTQ                 VEIELPVPD LP SA SS S    TW+ELY
Subjt:  MTETLSPMLYSTVCTQ-----------------VEIELPVPDNLPWSAGSSTSLIFCTWMELY
TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein1.3e-0666Show/hide
Query:  MTETLSPMLYSTVCTQVEIELPVPDNLPWSAGSSTSLIFCTWMELYRKSI
        MTE LS  LY TVCTQV+IELP+PD LP SA SS S  F TW+ELY +S+
Subjt:  MTETLSPMLYSTVCTQVEIELPVPDNLPWSAGSSTSLIFCTWMELYRKSI
A0A5A7VMG9 Reverse transcriptase4.5e-0453.97Show/hide
Query:  MTETLSPMLYSTVCTQ-----------------VEIELPVPDNLPWSAGSSTSLIFCTWMELY
        MTE LSP LY TVCTQ                 VEIELPVPD LP SA SS S    TW+ELY
Subjt:  MTETLSPMLYSTVCTQ-----------------VEIELPVPDNLPWSAGSSTSLIFCTWMELY
A0A5D3DX39 Reverse transcriptase4.5e-0453.97Show/hide
Query:  MTETLSPMLYSTVCTQ-----------------VEIELPVPDNLPWSAGSSTSLIFCTWMELY
        MTE LSP LY TVCTQ                 VEIELPVPD LP SA SS S    TW+ELY
Subjt:  MTETLSPMLYSTVCTQ-----------------VEIELPVPDNLPWSAGSSTSLIFCTWMELY
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGACATTGAGCCCGATGCTATATAGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATGGTCTGCTGGAAGCTCCACGAGTTT
GATATTTTGTACGTGGATGGAGTTGTATAGAAAGTCTATATGTATTCTCGGCAGACGGCTTAATTCAATAGAACTAGCAGAACATGGTCCAAGTAAGGATAAGAGTAAGT
CCAGTCAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGACATTGAGCCCGATGCTATATAGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATGGTCTGCTGGAAGCTCCACGAGTTT
GATATTTTGTACGTGGATGGAGTTGTATAGAAAGTCTATATGTATTCTCGGCAGACGGCTTAATTCAATAGAACTAGCAGAACATGGTCCAAGTAAGGATAAGAGTAAGT
CCAGTCAGGACTAG
Protein sequenceShow/hide protein sequence
MTETLSPMLYSTVCTQVEIELPVPDNLPWSAGSSTSLIFCTWMELYRKSICILGRRLNSIELAEHGPSKDKSKSSQD