; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0001958 (gene) of Snake gourd v1 genome

Gene IDTan0001958
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGRF-type domain-containing protein
Genome locationLG02:13821592..13825387
RNA-Seq ExpressionTan0001958
SyntenyTan0001958
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645848.1 hypothetical protein Csa_017077 [Cucumis sativus]4.3e-5873.47Show/hide
Query:  MSTLEVYEEYDLECYCGVPAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGHVDELNLIRNECIRLQERLDEIEEEHDGERAEWEREKAE
        MS+ E+YEE  LECYCGV AKLRMS T+K PFRLFYNCPKEISQQCGFFHWADE EPS+D H +EL+LIRN CIRL ERLDEI EEH+ E+ EWEREKAE
Subjt:  MSTLEVYEEYDLECYCGVPAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGHVDELNLIRNECIRLQERLDEIEEEHDGERAEWEREKAE

Query:  LTLKIFTLRTELDDVRNRIRMANESFSMPPFDALSIRDNEDDDTLVV
        LTLK+ TL+T+LDD+ NR+R+ NESFSMPPF++LSIRD++DD+T+ +
Subjt:  LTLKIFTLRTELDDVRNRIRMANESFSMPPFDALSIRDNEDDDTLVV

KAF2294607.1 hypothetical protein GH714_013386 [Hevea brasiliensis]2.5e-4557.72Show/hide
Query:  STLEVYEEYDLECYCGVPAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGHVDELNLIRNECIRLQERLDEIEEEHDGERAEWEREKAEL
        S L  +E+ ++ C CG+PAKLR+SQT +NPFRLFYNCP+  + QCGFF W DEP P+ D H DE+NLIRNEC RLQ RLDEIE+ H+ +R+ WEREK+EL
Subjt:  STLEVYEEYDLECYCGVPAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGHVDELNLIRNECIRLQERLDEIEEEHDGERAEWEREKAEL

Query:  TLKIFTLRTELDDVRNRIRMANESFSMPPFDALSIRDNEDDDTLVVYTL
         LK+ T++TELD+++ R+R  NES  MPP D L I D+E DD + ++T+
Subjt:  TLKIFTLRTELDDVRNRIRMANESFSMPPFDALSIRDNEDDDTLVVYTL

XP_004136954.1 uncharacterized protein LOC101219463 [Cucumis sativus]7.2e-6175.33Show/hide
Query:  MSTLEVYEEYDLECYCGVPAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGHVDELNLIRNECIRLQERLDEIEEEHDGERAEWEREKAE
        MS+ E+YEE  LECYCGV AKLRMS T+K PFRLFYNCPKEISQQCGFFHWADE EPS+D H +EL+LIRN CIRL ERLDEI EEH+ E+ EWEREKAE
Subjt:  MSTLEVYEEYDLECYCGVPAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGHVDELNLIRNECIRLQERLDEIEEEHDGERAEWEREKAE

Query:  LTLKIFTLRTELDDVRNRIRMANESFSMPPFDALSIRDNEDDDTLVVYTL
        LTLK+ TL+T+LDD+ NR+R+ NESFSMPPF++LSIRD++DD+TLV+YTL
Subjt:  LTLKIFTLRTELDDVRNRIRMANESFSMPPFDALSIRDNEDDDTLVVYTL

XP_008455003.1 PREDICTED: uncharacterized protein LOC103495284 [Cucumis melo]1.2e-6076.16Show/hide
Query:  MSTLEVYEEYDLECYCGVPAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGHVDELNLIRNECIRLQERLDEIEEEHDGERAEWEREKAE
        MS+ E+YEE  LECYCG  AKLRMS T+KNPFRLFYNCPKE+SQQCGFFHWADEPEPSDD H +EL+LIRN CIRL ERLDEI EEH+ E+ EWEREKAE
Subjt:  MSTLEVYEEYDLECYCGVPAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGHVDELNLIRNECIRLQERLDEIEEEHDGERAEWEREKAE

Query:  LTLKIFTLRTELDDVRNRIRMANESFSMPPFDALSIRDNED-DDTLVVYTL
        LTLK+ TL+T+LDD+ NRIR+ NESFSMPPF++LSIRD++D +DTLVVY L
Subjt:  LTLKIFTLRTELDDVRNRIRMANESFSMPPFDALSIRDNED-DDTLVVYTL

XP_022148840.1 uncharacterized protein LOC111017399 [Momordica charantia]4.8e-6578.67Show/hide
Query:  MSTLEVYEEYDLECYCGVPAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGHVDELNLIRNECIRLQERLDEIEEEHDGERAEWEREKAE
        MST E++EE +LECYCG+PAKLR SQT KNPFRLFYNCPKEISQQCGFFHWADEPEPSDD HV+ELNLIRN C+ LQ+RLDEIEEEHD E+AEWER+K E
Subjt:  MSTLEVYEEYDLECYCGVPAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGHVDELNLIRNECIRLQERLDEIEEEHDGERAEWEREKAE

Query:  LTLKIFTLRTELDDVRNRIRMANESFSMPPFDALSIRDNEDDDTLVVYTL
        LTL++ TL+++LDD+++RIRMANESFSMPP DALSIRD+E DD LV+YTL
Subjt:  LTLKIFTLRTELDDVRNRIRMANESFSMPPFDALSIRDNEDDDTLVVYTL

TrEMBL top hitse value%identityAlignment
A0A0A0K2H6 GRF-type domain-containing protein3.5e-6175.33Show/hide
Query:  MSTLEVYEEYDLECYCGVPAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGHVDELNLIRNECIRLQERLDEIEEEHDGERAEWEREKAE
        MS+ E+YEE  LECYCGV AKLRMS T+K PFRLFYNCPKEISQQCGFFHWADE EPS+D H +EL+LIRN CIRL ERLDEI EEH+ E+ EWEREKAE
Subjt:  MSTLEVYEEYDLECYCGVPAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGHVDELNLIRNECIRLQERLDEIEEEHDGERAEWEREKAE

Query:  LTLKIFTLRTELDDVRNRIRMANESFSMPPFDALSIRDNEDDDTLVVYTL
        LTLK+ TL+T+LDD+ NR+R+ NESFSMPPF++LSIRD++DD+TLV+YTL
Subjt:  LTLKIFTLRTELDDVRNRIRMANESFSMPPFDALSIRDNEDDDTLVVYTL

A0A1S4E0B8 uncharacterized protein LOC1034952845.9e-6176.16Show/hide
Query:  MSTLEVYEEYDLECYCGVPAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGHVDELNLIRNECIRLQERLDEIEEEHDGERAEWEREKAE
        MS+ E+YEE  LECYCG  AKLRMS T+KNPFRLFYNCPKE+SQQCGFFHWADEPEPSDD H +EL+LIRN CIRL ERLDEI EEH+ E+ EWEREKAE
Subjt:  MSTLEVYEEYDLECYCGVPAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGHVDELNLIRNECIRLQERLDEIEEEHDGERAEWEREKAE

Query:  LTLKIFTLRTELDDVRNRIRMANESFSMPPFDALSIRDNED-DDTLVVYTL
        LTLK+ TL+T+LDD+ NRIR+ NESFSMPPF++LSIRD++D +DTLVVY L
Subjt:  LTLKIFTLRTELDDVRNRIRMANESFSMPPFDALSIRDNED-DDTLVVYTL

A0A5A7SJM5 GRF-type domain-containing protein5.9e-6176.16Show/hide
Query:  MSTLEVYEEYDLECYCGVPAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGHVDELNLIRNECIRLQERLDEIEEEHDGERAEWEREKAE
        MS+ E+YEE  LECYCG  AKLRMS T+KNPFRLFYNCPKE+SQQCGFFHWADEPEPSDD H +EL+LIRN CIRL ERLDEI EEH+ E+ EWEREKAE
Subjt:  MSTLEVYEEYDLECYCGVPAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGHVDELNLIRNECIRLQERLDEIEEEHDGERAEWEREKAE

Query:  LTLKIFTLRTELDDVRNRIRMANESFSMPPFDALSIRDNED-DDTLVVYTL
        LTLK+ TL+T+LDD+ NRIR+ NESFSMPPF++LSIRD++D +DTLVVY L
Subjt:  LTLKIFTLRTELDDVRNRIRMANESFSMPPFDALSIRDNED-DDTLVVYTL

A0A6J1D427 uncharacterized protein LOC1110173992.3e-6578.67Show/hide
Query:  MSTLEVYEEYDLECYCGVPAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGHVDELNLIRNECIRLQERLDEIEEEHDGERAEWEREKAE
        MST E++EE +LECYCG+PAKLR SQT KNPFRLFYNCPKEISQQCGFFHWADEPEPSDD HV+ELNLIRN C+ LQ+RLDEIEEEHD E+AEWER+K E
Subjt:  MSTLEVYEEYDLECYCGVPAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGHVDELNLIRNECIRLQERLDEIEEEHDGERAEWEREKAE

Query:  LTLKIFTLRTELDDVRNRIRMANESFSMPPFDALSIRDNEDDDTLVVYTL
        LTL++ TL+++LDD+++RIRMANESFSMPP DALSIRD+E DD LV+YTL
Subjt:  LTLKIFTLRTELDDVRNRIRMANESFSMPPFDALSIRDNEDDDTLVVYTL

A0A6J5Y667 GRF-type domain-containing protein1.2e-4563.64Show/hide
Query:  EEYDLECYCGVPAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGHVDELNLIRNECIRLQERLDEIEEEHDGERAEWEREKAELTLKIFT
        E+ +L+C CG+PAKLR+SQT KNPFRLFYNCPK IS QC FF W+DEP P+ D   DE NLIR+ECIRLQE L+EI++E D ER EW REK+ELT ++ T
Subjt:  EEYDLECYCGVPAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGHVDELNLIRNECIRLQERLDEIEEEHDGERAEWEREKAELTLKIFT

Query:  LRTELDDVRNRIRMANESFSMPPFDALSIRDNEDDDTLVVYTL
        L++ELD ++ RI+MANES  MPP D LSI D++DDD LV++T+
Subjt:  LRTELDDVRNRIRMANESFSMPPFDALSIRDNEDDDTLVVYTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54930.1 GRF zinc finger / Zinc knuckle protein1.7e-0442.22Show/hide
Query:  DLECYCGV-PAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADE
        D+ C C   P     S+T+KNP R FY CP      CG+F W D+
Subjt:  DLECYCGV-PAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADE

AT3G42860.1 zinc knuckle (CCHC-type) family protein7.8e-0548.94Show/hide
Query:  CYCGVPAKLRM-SQTQKNPFRLFYNCP-KEISQQCGFFHWADEPEPS
        C CGV   L + S T KNP R FY CP +E +  CGFF W D  + S
Subjt:  CYCGVPAKLRM-SQTQKNPFRLFYNCP-KEISQQCGFFHWADEPEPS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACTTTGGAAGTCTATGAGGAATATGATCTAGAATGTTACTGTGGAGTGCCTGCAAAACTGAGAATGTCTCAGACACAAAAAAATCCATTCAGGTTATTCTACAA
CTGTCCAAAGGAGATATCTCAACAATGTGGTTTTTTCCATTGGGCTGATGAACCCGAACCATCCGATGATGGACACGTCGATGAACTAAACTTGATCCGCAACGAGTGCA
TTCGTCTACAGGAAAGATTAGACGAAATCGAAGAGGAACATGATGGTGAGAGAGCGGAGTGGGAAAGGGAAAAAGCTGAGCTAACGTTGAAAATATTTACTCTGCGAACT
GAGCTTGATGATGTTCGGAATAGAATAAGAATGGCAAATGAATCTTTTTCAATGCCTCCTTTCGATGCACTCTCCATTAGAGACAACGAGGACGACGACACATTAGTGGT
ATATACTTTGTAA
mRNA sequenceShow/hide mRNA sequence
AGAAGATTCATCATATCATCGTAGGAAGTGCTTTTGTCACCCACGCGATAGGCTCCAAACTTCTCACACTCGTCGCTCGCTGTATCAATGCGACGACGATCTTCGTTTGC
TGCTTCAATCGGTTGCTCGAATTTACGAAGAACATTCTTTTAGGATCCATACTTCAACAATGTCTACTTTGGAAGTCTATGAGGAATATGATCTAGAATGTTACTGTGGA
GTGCCTGCAAAACTGAGAATGTCTCAGACACAAAAAAATCCATTCAGGTTATTCTACAACTGTCCAAAGGAGATATCTCAACAATGTGGTTTTTTCCATTGGGCTGATGA
ACCCGAACCATCCGATGATGGACACGTCGATGAACTAAACTTGATCCGCAACGAGTGCATTCGTCTACAGGAAAGATTAGACGAAATCGAAGAGGAACATGATGGTGAGA
GAGCGGAGTGGGAAAGGGAAAAAGCTGAGCTAACGTTGAAAATATTTACTCTGCGAACTGAGCTTGATGATGTTCGGAATAGAATAAGAATGGCAAATGAATCTTTTTCA
ATGCCTCCTTTCGATGCACTCTCCATTAGAGACAACGAGGACGACGACACATTAGTGGTATATACTTTGTAAATAGATCATTGTAAATTATATTGTGTGAAGTGAGAGAT
TATGTCGAAAAGTTTAAGCTATCTATTCTCATGACATGTTTGAGCCTTTGTTTATAAGATATGGTTGTTCCATTTAGTTTCTTCTTAATCTTGGATGAACACAAAAAATG
CAACAGTTTGGAAGCTTAAGAATCAAAAGAGCAGGAG
Protein sequenceShow/hide protein sequence
MSTLEVYEEYDLECYCGVPAKLRMSQTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGHVDELNLIRNECIRLQERLDEIEEEHDGERAEWEREKAELTLKIFTLRT
ELDDVRNRIRMANESFSMPPFDALSIRDNEDDDTLVVYTL