; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0001961 (gene) of Snake gourd v1 genome

Gene IDTan0001961
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationLG02:1987464..1988478
RNA-Seq ExpressionTan0001961
SyntenyTan0001961
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008459734.1 PREDICTED: uncharacterized protein LOC103498776 [Cucumis melo]8.6e-3534.96Show/hide
Query:  FVLNDIKKLAEAMSVIATVHDEVDLEFSPDMVSIVMIEPTSIPTDFIIDLQMFPHFFSKYECDQYHSSWIYLTDLYPKISNLEQSGYSSFTFTVRVY-DE
        FV+N+++ L +A++ +       D  FSP+M  +++    SI +   I LQ++P FF  Y C +   SW +  +++P   +L+ SGY+SF+F++    D 
Subjt:  FVLNDIKKLAEAMSVIATVHDEVDLEFSPDMVSIVMIEPTSIPTDFIIDLQMFPHFFSKYECDQYHSSWIYLTDLYPKISNLEQSGYSSFTFTVRVY-DE

Query:  ADFKFQHPNGDSWENSLYLAHLYDSKHVIEFDYTSFVTMDSHQFIPIVTQFHFL--LLVTVTSTQVVFSNASILNIILLTPENGECIIGGVPPETEIRFI
        A  KFQ PNG   E +  L + +    + +FD + FV+MDS +F  +++Q+H    + VT+TS +V+FS  SI+   +L  +NG+CIIGG+    +++FI
Subjt:  ADFKFQHPNGDSWENSLYLAHLYDSKHVIEFDYTSFVTMDSHQFIPIVTQFHFL--LLVTVTSTQVVFSNASILNIILLTPENGECIIGGVPPETEIRFI

Query:  IRPARMDTFSNMALLAGRIWLFKSINSSKGVMIAVLGLDSRFLVSF
        +     + F+++A    R+W FK  NS+KG++ A LGL+SR +  F
Subjt:  IRPARMDTFSNMALLAGRIWLFKSINSSKGVMIAVLGLDSRFLVSF

XP_022959414.1 uncharacterized protein LOC111460397 [Cucurbita moschata]5.4e-3739.42Show/hide
Query:  IKKLAEAMSVIATVHDEVDLEFSPDMVSIVMIEPTSIPT-DFIIDLQMFPHFFSKYECDQYHSSWIYLTDLYPKISNLEQSGYSSFTFTVRVYDEADFKF
        ++ L +A SV+A+  D  D++F  +M +I+     S P    +I L ++P FF +Y C++   SW ++ +L+P + ++E+SG++S TFTV   + A+ KF
Subjt:  IKKLAEAMSVIATVHDEVDLEFSPDMVSIVMIEPTSIPT-DFIIDLQMFPHFFSKYECDQYHSSWIYLTDLYPKISNLEQSGYSSFTFTVRVYDEADFKF

Query:  QHPNGDSWENSLYLAHLYDSKHVIEFDYTSFVTMDSHQFIPIVTQFHFL--LLVTVTSTQVVFSNASILNIILLTPENGECIIGGVPPETEIRFIIRPAR
        Q PNG S +    L    D   V +FD++SFV+++S +F+ IVT++H    + VTVTST+V+FS A +L  I LT E+GEC+IGG+     + FII  + 
Subjt:  QHPNGDSWENSLYLAHLYDSKHVIEFDYTSFVTMDSHQFIPIVTQFHFL--LLVTVTSTQVVFSNASILNIILLTPENGECIIGGVPPETEIRFIIRPAR

Query:  MDTFSNMALLAGRIWLFKSINSSKGVMIAVLGLDSRFLVSF
        ++ F +MA  + R+WL+KS++++KGV+I  LGL  RF+  F
Subjt:  MDTFSNMALLAGRIWLFKSINSSKGVMIAVLGLDSRFLVSF

XP_023006644.1 uncharacterized protein LOC111499308 [Cucurbita maxima]4.0e-4041.06Show/hide
Query:  FVLNDIKKLAEAMSVIATVHDEVDLEFSPDMVSIVMIEPTSIPT-DFIIDLQMFPHFFSKYECDQYHSSWIYLTDLYPKISNLEQSGYSSFTFTVRVYDE
        FVLN ++ L +A SV+A+  D  D++FS +M +I+     S P    +I L ++P FF +Y C++   SW ++ +L+P + ++E+SG++S +FTV   + 
Subjt:  FVLNDIKKLAEAMSVIATVHDEVDLEFSPDMVSIVMIEPTSIPT-DFIIDLQMFPHFFSKYECDQYHSSWIYLTDLYPKISNLEQSGYSSFTFTVRVYDE

Query:  ADFKFQHPNGDSWENSLYLAHLYDSKHVIEFDYTSFVTMDSHQFIPIVTQFHFL--LLVTVTSTQVVFSNASILNIILLTPENGECIIGGVPPETEIRFI
        A+ KFQ PNG S E    L    D   V +FD++SFV++DS +F+ IVT++H    + VTVTST+V+FS A +L  I LT E+GEC+IGG+     + FI
Subjt:  ADFKFQHPNGDSWENSLYLAHLYDSKHVIEFDYTSFVTMDSHQFIPIVTQFHFL--LLVTVTSTQVVFSNASILNIILLTPENGECIIGGVPPETEIRFI

Query:  IRPARMDTFSNMALLAGRIWLFKSINSSKGVMIAVLGLDSRFLVSF
        I  + ++ F +MA  + R+WL+KS+ ++KGV+I  LGL  RF+  F
Subjt:  IRPARMDTFSNMALLAGRIWLFKSINSSKGVMIAVLGLDSRFLVSF

XP_023549342.1 uncharacterized protein LOC111807724 [Cucurbita pepo subsp. pepo]7.0e-3739.42Show/hide
Query:  IKKLAEAMSVIATVHDEVDLEFSPDMVSIVMIEPTSIPT-DFIIDLQMFPHFFSKYECDQYHSSWIYLTDLYPKISNLEQSGYSSFTFTVRVYDEADFKF
        ++ L +A SV+A+  D  D++FS +M +I+     S P    +I L ++P FF +Y C++   SW ++ +L+P + ++E+SG++S TFTV   + A+ KF
Subjt:  IKKLAEAMSVIATVHDEVDLEFSPDMVSIVMIEPTSIPT-DFIIDLQMFPHFFSKYECDQYHSSWIYLTDLYPKISNLEQSGYSSFTFTVRVYDEADFKF

Query:  QHPNGDSWENSLYLAHLYDSKHVIEFDYTSFVTMDSHQFIPIVTQFHFL--LLVTVTSTQVVFSNASILNIILLTPENGECIIGGVPPETEIRFIIRPAR
        Q PNG S +    L    D   V +FD++SFV+++S +F+ IVT++H    + V VTST+V+FS A +L  I LT E+GEC+IGG+     + FII  + 
Subjt:  QHPNGDSWENSLYLAHLYDSKHVIEFDYTSFVTMDSHQFIPIVTQFHFL--LLVTVTSTQVVFSNASILNIILLTPENGECIIGGVPPETEIRFIIRPAR

Query:  MDTFSNMALLAGRIWLFKSINSSKGVMIAVLGLDSRFLVSF
        ++ F +MA  + R+WL+KS+ ++KGV+I  LGL  RF+  F
Subjt:  MDTFSNMALLAGRIWLFKSINSSKGVMIAVLGLDSRFLVSF

XP_038876014.1 uncharacterized protein LOC120068348 [Benincasa hispida]2.3e-3539.84Show/hide
Query:  MIGFVLNDIKKLAEAMSVIATVHDEVDLEFSPDMVSIVMIEPTSIPTDFIIDLQMFPHFFSKYEC-DQYHSSWIYLTDLYPKISNLEQSGYSSFTFT-VR
        +  FV+ND++ L  A + +  V    D+ FSP+M+ I+     SI     I +Q++P FF  Y C +    SW YLT ++P    L  SGY+SFTF+ + 
Subjt:  MIGFVLNDIKKLAEAMSVIATVHDEVDLEFSPDMVSIVMIEPTSIPTDFIIDLQMFPHFFSKYEC-DQYHSSWIYLTDLYPKISNLEQSGYSSFTFT-VR

Query:  VYDE-ADFKFQHPNGDSWENSLYLAHLYDSKHVIEFDYTSFVTMDSHQFIPIVTQFHFL--LLVTVTSTQVVFSNASILNIILLTPENGECIIGGVPPET
         Y+E A  KF+ PNG   E    L + +   +V EFD + FV++DS +F  IV ++H    + VT+TST+V FS A I+   +LTP++G+C+IGGV    
Subjt:  VYDE-ADFKFQHPNGDSWENSLYLAHLYDSKHVIEFDYTSFVTMDSHQFIPIVTQFHFL--LLVTVTSTQVVFSNASILNIILLTPENGECIIGGVPPET

Query:  EIRFIIRPARMDTFSNMALLAGRIWLFKSINSSKGVMIAVLGLDSRFLVSF
        +I+FII  A  + F ++A  A RIW FK+ NS+KGV+ A +GL+ R +  F
Subjt:  EIRFIIRPARMDTFSNMALLAGRIWLFKSINSSKGVMIAVLGLDSRFLVSF

TrEMBL top hitse value%identityAlignment
A0A0A0LIF2 Uncharacterized protein1.1e-3033.33Show/hide
Query:  FVLNDIKKLAEAMSVIATVHDEVDLEFSPDMVSIVMIEPTSIPTDFIIDLQMFPHFFSKYECDQYHSSWIYLTDLYPKISNLEQSGYSSFTFTV-RVYDE
        F++N+++ L +A + +     + D  FSP+M  ++     SI +   I LQ++P FF  Y C    +SW + ++++P    L+  GY+SF+F++ R    
Subjt:  FVLNDIKKLAEAMSVIATVHDEVDLEFSPDMVSIVMIEPTSIPTDFIIDLQMFPHFFSKYECDQYHSSWIYLTDLYPKISNLEQSGYSSFTFTV-RVYDE

Query:  ADFKFQHPNGDSWENSLYLAHLYDSKHVIEFDYTSFVTMDSHQFIPIVTQFHFL--LLVTVTSTQVVFSNASILNIILLTPENGECIIGGVPPETEIRFI
        A  +FQ P     E +L L   +    + +FD + FV+MDS QF  +++Q+H    + VT+TS +V+FS +++   I L+P+NG+CIIGG+    E+ F+
Subjt:  ADFKFQHPNGDSWENSLYLAHLYDSKHVIEFDYTSFVTMDSHQFIPIVTQFHFL--LLVTVTSTQVVFSNASILNIILLTPENGECIIGGVPPETEIRFI

Query:  IRPARMDTFSNMALLAGRIWLFKSINSSKGVMIAVLGLDSRFLVSF
        I     + F+++A    R+W FK  NS++G++ A LGL++R +  F
Subjt:  IRPARMDTFSNMALLAGRIWLFKSINSSKGVMIAVLGLDSRFLVSF

A0A1S3CBB9 uncharacterized protein LOC1034987764.1e-3534.96Show/hide
Query:  FVLNDIKKLAEAMSVIATVHDEVDLEFSPDMVSIVMIEPTSIPTDFIIDLQMFPHFFSKYECDQYHSSWIYLTDLYPKISNLEQSGYSSFTFTVRVY-DE
        FV+N+++ L +A++ +       D  FSP+M  +++    SI +   I LQ++P FF  Y C +   SW +  +++P   +L+ SGY+SF+F++    D 
Subjt:  FVLNDIKKLAEAMSVIATVHDEVDLEFSPDMVSIVMIEPTSIPTDFIIDLQMFPHFFSKYECDQYHSSWIYLTDLYPKISNLEQSGYSSFTFTVRVY-DE

Query:  ADFKFQHPNGDSWENSLYLAHLYDSKHVIEFDYTSFVTMDSHQFIPIVTQFHFL--LLVTVTSTQVVFSNASILNIILLTPENGECIIGGVPPETEIRFI
        A  KFQ PNG   E +  L + +    + +FD + FV+MDS +F  +++Q+H    + VT+TS +V+FS  SI+   +L  +NG+CIIGG+    +++FI
Subjt:  ADFKFQHPNGDSWENSLYLAHLYDSKHVIEFDYTSFVTMDSHQFIPIVTQFHFL--LLVTVTSTQVVFSNASILNIILLTPENGECIIGGVPPETEIRFI

Query:  IRPARMDTFSNMALLAGRIWLFKSINSSKGVMIAVLGLDSRFLVSF
        +     + F+++A    R+W FK  NS+KG++ A LGL+SR +  F
Subjt:  IRPARMDTFSNMALLAGRIWLFKSINSSKGVMIAVLGLDSRFLVSF

A0A5D3DMK7 Uncharacterized protein1.1e-3239.02Show/hide
Query:  LNDIKKLAEAMSVIATVHDEVDLEFSPDMVSIVMIEPTSIPTDFIIDLQMFPHFFSKYECDQYHS-SWIYLTDLYPKISNLEQSGYSSFTFTVR--VYDE
        +ND+K L + +  +  V    D  FSPDM  I+     SI + F I+L   P FF  +  D+     W  LT L+P    L +SGY+SFTF++    Y+ 
Subjt:  LNDIKKLAEAMSVIATVHDEVDLEFSPDMVSIVMIEPTSIPTDFIIDLQMFPHFFSKYECDQYHS-SWIYLTDLYPKISNLEQSGYSSFTFTVR--VYDE

Query:  ADFKFQHPNGDSWENSLYLAHLYDSKHVIEFDYTSFVTMDSHQFIPIVTQFHFL--LLVTVTSTQVVFSNASILNIILLTPENGECIIGGVPPETEIRFI
        A F+F+ PNG   E +  L  +     + E D ++FVTMDS +F  I++++H    + V +T+ +V FS A I+   ++TP++G+CIIGG+ P  E++FI
Subjt:  ADFKFQHPNGDSWENSLYLAHLYDSKHVIEFDYTSFVTMDSHQFIPIVTQFHFL--LLVTVTSTQVVFSNASILNIILLTPENGECIIGGVPPETEIRFI

Query:  IRPARMDTFSNMALLAGRIWLFKSINSSKGVMIAVLGLDSRFLVSF
        I  ++ D F + A  + RIWLFK +NS+KG++ A LGL  R LVSF
Subjt:  IRPARMDTFSNMALLAGRIWLFKSINSSKGVMIAVLGLDSRFLVSF

A0A6J1H801 uncharacterized protein LOC1114603972.6e-3739.42Show/hide
Query:  IKKLAEAMSVIATVHDEVDLEFSPDMVSIVMIEPTSIPT-DFIIDLQMFPHFFSKYECDQYHSSWIYLTDLYPKISNLEQSGYSSFTFTVRVYDEADFKF
        ++ L +A SV+A+  D  D++F  +M +I+     S P    +I L ++P FF +Y C++   SW ++ +L+P + ++E+SG++S TFTV   + A+ KF
Subjt:  IKKLAEAMSVIATVHDEVDLEFSPDMVSIVMIEPTSIPT-DFIIDLQMFPHFFSKYECDQYHSSWIYLTDLYPKISNLEQSGYSSFTFTVRVYDEADFKF

Query:  QHPNGDSWENSLYLAHLYDSKHVIEFDYTSFVTMDSHQFIPIVTQFHFL--LLVTVTSTQVVFSNASILNIILLTPENGECIIGGVPPETEIRFIIRPAR
        Q PNG S +    L    D   V +FD++SFV+++S +F+ IVT++H    + VTVTST+V+FS A +L  I LT E+GEC+IGG+     + FII  + 
Subjt:  QHPNGDSWENSLYLAHLYDSKHVIEFDYTSFVTMDSHQFIPIVTQFHFL--LLVTVTSTQVVFSNASILNIILLTPENGECIIGGVPPETEIRFIIRPAR

Query:  MDTFSNMALLAGRIWLFKSINSSKGVMIAVLGLDSRFLVSF
        ++ F +MA  + R+WL+KS++++KGV+I  LGL  RF+  F
Subjt:  MDTFSNMALLAGRIWLFKSINSSKGVMIAVLGLDSRFLVSF

A0A6J1L2R2 uncharacterized protein LOC1114993081.9e-4041.06Show/hide
Query:  FVLNDIKKLAEAMSVIATVHDEVDLEFSPDMVSIVMIEPTSIPT-DFIIDLQMFPHFFSKYECDQYHSSWIYLTDLYPKISNLEQSGYSSFTFTVRVYDE
        FVLN ++ L +A SV+A+  D  D++FS +M +I+     S P    +I L ++P FF +Y C++   SW ++ +L+P + ++E+SG++S +FTV   + 
Subjt:  FVLNDIKKLAEAMSVIATVHDEVDLEFSPDMVSIVMIEPTSIPT-DFIIDLQMFPHFFSKYECDQYHSSWIYLTDLYPKISNLEQSGYSSFTFTVRVYDE

Query:  ADFKFQHPNGDSWENSLYLAHLYDSKHVIEFDYTSFVTMDSHQFIPIVTQFHFL--LLVTVTSTQVVFSNASILNIILLTPENGECIIGGVPPETEIRFI
        A+ KFQ PNG S E    L    D   V +FD++SFV++DS +F+ IVT++H    + VTVTST+V+FS A +L  I LT E+GEC+IGG+     + FI
Subjt:  ADFKFQHPNGDSWENSLYLAHLYDSKHVIEFDYTSFVTMDSHQFIPIVTQFHFL--LLVTVTSTQVVFSNASILNIILLTPENGECIIGGVPPETEIRFI

Query:  IRPARMDTFSNMALLAGRIWLFKSINSSKGVMIAVLGLDSRFLVSF
        I  + ++ F +MA  + R+WL+KS+ ++KGV+I  LGL  RF+  F
Subjt:  IRPARMDTFSNMALLAGRIWLFKSINSSKGVMIAVLGLDSRFLVSF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGGTTTCGTTCTGAATGATATCAAGAAGCTGGCAGAAGCGATGTCTGTGATCGCCACCGTCCACGACGAAGTGGATCTAGAATTCTCGCCGGATATGGTGTCCAT
AGTTATGATCGAACCCACAAGTATTCCCACTGATTTCATTATAGACCTCCAAATGTTTCCACACTTCTTTAGCAAATATGAGTGCGATCAATATCACTCTTCATGGATTT
ACCTCACCGACCTTTATCCCAAGATATCCAATTTGGAACAATCCGGTTATTCTTCTTTTACCTTTACTGTCCGAGTCTATGATGAAGCCGACTTCAAATTTCAACATCCA
AATGGCGATTCTTGGGAGAATAGTTTGTACTTGGCTCATCTCTATGATTCGAAACACGTCATTGAATTTGATTACACATCTTTTGTCACCATGGACTCGCACCAGTTCAT
ACCCATTGTCACCCAATTTCATTTCCTTCTTCTTGTTACTGTAACCAGTACACAAGTCGTGTTCTCTAATGCATCCATACTGAATATTATTCTTCTTACTCCTGAGAATG
GAGAATGTATTATAGGAGGGGTTCCGCCTGAAACTGAAATTCGTTTTATAATAAGGCCTGCACGCATGGATACTTTCTCTAATATGGCACTTCTAGCTGGAAGAATATGG
TTATTCAAGTCAATTAATTCTTCCAAAGGTGTAATGATTGCTGTTTTAGGATTGGATTCTAGATTTTTGGTCTCTTTTCCTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCGGTTTCGTTCTGAATGATATCAAGAAGCTGGCAGAAGCGATGTCTGTGATCGCCACCGTCCACGACGAAGTGGATCTAGAATTCTCGCCGGATATGGTGTCCAT
AGTTATGATCGAACCCACAAGTATTCCCACTGATTTCATTATAGACCTCCAAATGTTTCCACACTTCTTTAGCAAATATGAGTGCGATCAATATCACTCTTCATGGATTT
ACCTCACCGACCTTTATCCCAAGATATCCAATTTGGAACAATCCGGTTATTCTTCTTTTACCTTTACTGTCCGAGTCTATGATGAAGCCGACTTCAAATTTCAACATCCA
AATGGCGATTCTTGGGAGAATAGTTTGTACTTGGCTCATCTCTATGATTCGAAACACGTCATTGAATTTGATTACACATCTTTTGTCACCATGGACTCGCACCAGTTCAT
ACCCATTGTCACCCAATTTCATTTCCTTCTTCTTGTTACTGTAACCAGTACACAAGTCGTGTTCTCTAATGCATCCATACTGAATATTATTCTTCTTACTCCTGAGAATG
GAGAATGTATTATAGGAGGGGTTCCGCCTGAAACTGAAATTCGTTTTATAATAAGGCCTGCACGCATGGATACTTTCTCTAATATGGCACTTCTAGCTGGAAGAATATGG
TTATTCAAGTCAATTAATTCTTCCAAAGGTGTAATGATTGCTGTTTTAGGATTGGATTCTAGATTTTTGGTCTCTTTTCCTCTTTAA
Protein sequenceShow/hide protein sequence
MIGFVLNDIKKLAEAMSVIATVHDEVDLEFSPDMVSIVMIEPTSIPTDFIIDLQMFPHFFSKYECDQYHSSWIYLTDLYPKISNLEQSGYSSFTFTVRVYDEADFKFQHP
NGDSWENSLYLAHLYDSKHVIEFDYTSFVTMDSHQFIPIVTQFHFLLLVTVTSTQVVFSNASILNIILLTPENGECIIGGVPPETEIRFIIRPARMDTFSNMALLAGRIW
LFKSINSSKGVMIAVLGLDSRFLVSFPL