; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0001983 (gene) of Snake gourd v1 genome

Gene IDTan0001983
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG02:53119004..53137142
RNA-Seq ExpressionTan0001983
SyntenyTan0001983
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022157414.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia]1.7e-1155.95Show/hide
Query:  LVDMAQEGDLNINEARMREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDDQVTLIA
        + ++  EG  NI++AR REA +GT+ERMIR +E L+ERI RLE QN A  R+PPPP  R  D D EYEG  SD  EDDQ T++A
Subjt:  LVDMAQEGDLNINEARMREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDDQVTLIA

XP_022158199.1 uncharacterized protein LOC111024737 [Momordica charantia]2.2e-1177.08Show/hide
Query:  GDGYDSRANPSQEGEDDMNQGPPIVMPEGPITRSRAKKLQQALITHIQ
        GDGYDSR NPSQE EDD+NQG  IVMP+GPITRSR+KKLQQAL++++Q
Subjt:  GDGYDSRANPSQEGEDDMNQGPPIVMPEGPITRSRAKKLQQALITHIQ

XP_022971169.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111469948, partial [Cucurbita maxima]6.6e-0854.17Show/hide
Query:  EGDLNINEARMREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDD
        + + +I +AR+REAQQ TMER+IRGIEEL++RI RLE+QN AR+RIP P    +      YEG +SD  ED+
Subjt:  EGDLNINEARMREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDD

XP_023520282.1 uncharacterized protein LOC111783592 [Cucurbita pepo subsp. pepo]1.3e-0855.56Show/hide
Query:  EGDLNINEARMREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDD
        + + NI +AR+REAQQ TMER+IRGIEEL++RI RLE+QN AR+RIP P    +      YEG +SD  ED+
Subjt:  EGDLNINEARMREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDD

XP_023520835.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp. pepo]1.3e-0855.56Show/hide
Query:  EGDLNINEARMREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDD
        + + NI +AR+REAQQ TMER+IRGIEEL++RI RLE+QN AR+RIP P    +      YEG +SD  ED+
Subjt:  EGDLNINEARMREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDD

TrEMBL top hitse value%identityAlignment
A0A5A7TK52 Retrotrans_gag domain-containing protein7.1e-0849.32Show/hide
Query:  NEARMREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPP--PQQREDDHDNEYEGGSSDQLEDDQVTLI
        +E ++REAQQG + RMI  +E L++R+ R E++N AR R+PPP  P    + +DN+ EG  SD L+DDQVTL+
Subjt:  NEARMREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPP--PQQREDDHDNEYEGGSSDQLEDDQVTLI

A0A6J1DWE9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110241158.1e-1255.95Show/hide
Query:  LVDMAQEGDLNINEARMREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDDQVTLIA
        + ++  EG  NI++AR REA +GT+ERMIR +E L+ERI RLE QN A  R+PPPP  R  D D EYEG  SD  EDDQ T++A
Subjt:  LVDMAQEGDLNINEARMREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDDQVTLIA

A0A6J1DYP6 uncharacterized protein LOC1110247371.1e-1177.08Show/hide
Query:  GDGYDSRANPSQEGEDDMNQGPPIVMPEGPITRSRAKKLQQALITHIQ
        GDGYDSR NPSQE EDD+NQG  IVMP+GPITRSR+KKLQQAL++++Q
Subjt:  GDGYDSRANPSQEGEDDMNQGPPIVMPEGPITRSRAKKLQQALITHIQ

A0A6J1DYV9 uncharacterized protein LOC1110255391.7e-0665.31Show/hide
Query:  GDGYDSRANPSQEGEDDMNQGPPIVMPEGPITRSRAKKLQQALITHIQA
        GD +DSR NPS+ GEDDMNQ   + +P GPITRSRAK+LQ A  +HIQA
Subjt:  GDGYDSRANPSQEGEDDMNQGPPIVMPEGPITRSRAKKLQQALITHIQA

A0A6J1I7T3 LOW QUALITY PROTEIN: uncharacterized protein LOC1114699483.2e-0854.17Show/hide
Query:  EGDLNINEARMREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDD
        + + +I +AR+REAQQ TMER+IRGIEEL++RI RLE+QN AR+RIP P    +      YEG +SD  ED+
Subjt:  EGDLNINEARMREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGTAATTATCCTACTCATGATCTGGAGTTCGCAGCATCCTTTTGATGTAGGTGATGGTTATGATTCGAGGGCGAATCCTTCTCAAGAGGGGGAGGATGATATGAA
CCAAGGACCACCTATTGTCATGCCTGAAGGTCCAATTACAAGGTCGAGAGCCAAGAAGCTACAACAAGCTTTAATCACTCATATTCAAGCTATGAATTTGCATGCTAGAG
TCATTCAAGTGGTGTTGATCGTACCTCTTGTGGACATGGCACAAGAAGGTGATCTTAACATTAACGAAGCCCGAATGAGGGAGGCACAACAAGGAACCATGGAGAGAATG
ATTCGTGGAATAGAAGAGTTATCGGAGCGTATACGGAGGTTGGAGGTTCAAAACCACGCTAGGAGGAGAATTCCACCCCCTCCACAACAACGTGAGGATGACCATGACAA
CGAATATGAGGGAGGAAGTTCTGATCAACTAGAAGATGACCAAGTTACATTAATAGCAAATTTGCATGCTAGAGTCATTCAAGTGGTGTTGATCGTACCTCTTGTGGAGT
GA
mRNA sequenceShow/hide mRNA sequence
ATGAATGTAATTATCCTACTCATGATCTGGAGTTCGCAGCATCCTTTTGATGTAGGTGATGGTTATGATTCGAGGGCGAATCCTTCTCAAGAGGGGGAGGATGATATGAA
CCAAGGACCACCTATTGTCATGCCTGAAGGTCCAATTACAAGGTCGAGAGCCAAGAAGCTACAACAAGCTTTAATCACTCATATTCAAGCTATGAATTTGCATGCTAGAG
TCATTCAAGTGGTGTTGATCGTACCTCTTGTGGACATGGCACAAGAAGGTGATCTTAACATTAACGAAGCCCGAATGAGGGAGGCACAACAAGGAACCATGGAGAGAATG
ATTCGTGGAATAGAAGAGTTATCGGAGCGTATACGGAGGTTGGAGGTTCAAAACCACGCTAGGAGGAGAATTCCACCCCCTCCACAACAACGTGAGGATGACCATGACAA
CGAATATGAGGGAGGAAGTTCTGATCAACTAGAAGATGACCAAGTTACATTAATAGCAAATTTGCATGCTAGAGTCATTCAAGTGGTGTTGATCGTACCTCTTGTGGAGT
GA
Protein sequenceShow/hide protein sequence
MNVIILLMIWSSQHPFDVGDGYDSRANPSQEGEDDMNQGPPIVMPEGPITRSRAKKLQQALITHIQAMNLHARVIQVVLIVPLVDMAQEGDLNINEARMREAQQGTMERM
IRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDDQVTLIANLHARVIQVVLIVPLVE