; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0002049 (gene) of Snake gourd v1 genome

Gene IDTan0002049
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionphotosystem I reaction center subunit VI, chloroplastic-like
Genome locationLG04:85999349..86000660
RNA-Seq ExpressionTan0002049
SyntenyTan0002049
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009538 - photosystem I reaction center (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004928 - Photosystem I PsaH, reaction centre subunit VI


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018324.1 Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]6.6e-7297.22Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAGTKLPLRP+RQS RPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_011651500.1 photosystem I reaction center subunit VI, chloroplastic [Cucumis sativus]3.0e-7297.92Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAG KLPLRPSRQ+ RPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_022955723.1 photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita moschata]3.0e-7297.92Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQS RPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_023529177.1 photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita pepo subsp. pepo]3.9e-7297.92Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQS RPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_038902740.1 photosystem I reaction center subunit VI, chloroplastic-like [Benincasa hispida]1.3e-7298.61Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSL PKN+KAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

TrEMBL top hitse value%identityAlignment
A0A0A0LAW4 Uncharacterized protein1.4e-7297.92Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAG KLPLRPSRQ+ RPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A1S3BI80 photosystem I reaction center subunit VI, chloroplastic4.2e-7297.22Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP TVKGLGGSSLAG KLPLRPSRQS RPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A5D3C9C3 Photosystem I reaction center subunit VI4.2e-7297.22Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP TVKGLGGSSLAG KLPLRPSRQS RPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A6J1GUS6 photosystem I reaction center subunit VI, chloroplastic-like1.4e-7297.92Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQS RPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A6J1IVS0 photosystem I reaction center subunit VI, chloroplastic-like1.4e-7297.92Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQS RPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

SwissProt top hitse value%identityAlignment
A2Y7D9 Photosystem I reaction center subunit VI, chloroplastic8.5e-5475.35Show/hide
Query:  LATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSL-RPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLL
        +A+L AVQPV VKGL GSS++G KL +RPS ++L R       AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKRGLL
Subjt:  LATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSL-RPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLL

Query:  LKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LKFLLLGGG+ +AY SA+A  D+LPIKKGPQLPP  GPRGKI
Subjt:  LKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

O04006 Photosystem I reaction center subunit VI, chloroplastic7.9e-6080Show/hide
Query:  MASLATLAAVQPVT-VKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP + VKGLGGSSL G KL ++PSRQS +PK+ +AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQPVT-VKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SA++  DVLPIK+GPQ  PKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

P22179 Photosystem I reaction center subunit VI, chloroplastic8.4e-6279.86Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP T+KGL GSS+AGTKL ++P+RQS +  N ++GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFL+LGGG+ L Y SA AP DVLPI +GPQ PPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

Q9SUI6 Photosystem I reaction center subunit VI-2, chloroplastic7.9e-6080Show/hide
Query:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP   VKGLGGSSLAG KL ++PSRQS + K+ +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SA +  DVLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

Q9SUI7 Photosystem I reaction center subunit VI-1, chloroplastic3.0e-5977.93Show/hide
Query:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MASLAT+AAV+P   +KGLGGSSLAG KL ++PSR S +PK+ +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SAT+  +VLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

Arabidopsis top hitse value%identityAlignment
AT1G52230.1 photosystem I subunit H25.6e-6180Show/hide
Query:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP   VKGLGGSSLAG KL ++PSRQS + K+ +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SA +  DVLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

AT3G16140.1 photosystem I subunit H-12.1e-6077.93Show/hide
Query:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MASLAT+AAV+P   +KGLGGSSLAG KL ++PSR S +PK+ +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SAT+  +VLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTTAGCAACTCTAGCCGCCGTTCAGCCGGTCACCGTAAAGGGCCTCGGTGGAAGCTCCCTTGCCGGAACCAAGCTGCCCCTCCGGCCCTCTCGCCAGAGCTT
GAGACCCAAGAACTTCAAGGCTGGGGCTGTGGTGGCTAAGTATGGTGACAAAAGTGTTTATTTTGATTTGGAGGATTTGGGTAACACTACTGGACAGTGGGATTTGTATG
GATCTGATGCTCCTTCACCTTACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTTGCTGCTCCATTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTACTAGGTGGT
GGTGCCACTTTAGCTTATTTCAGTGCCACTGCCCCAGATGATGTTCTTCCAATCAAGAAAGGACCTCAACTTCCACCGAAACTCGGGCCACGTGGCAAGATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCTTAGCAACTCTAGCCGCCGTTCAGCCGGTCACCGTAAAGGGCCTCGGTGGAAGCTCCCTTGCCGGAACCAAGCTGCCCCTCCGGCCCTCTCGCCAGAGCTT
GAGACCCAAGAACTTCAAGGCTGGGGCTGTGGTGGCTAAGTATGGTGACAAAAGTGTTTATTTTGATTTGGAGGATTTGGGTAACACTACTGGACAGTGGGATTTGTATG
GATCTGATGCTCCTTCACCTTACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTTGCTGCTCCATTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTACTAGGTGGT
GGTGCCACTTTAGCTTATTTCAGTGCCACTGCCCCAGATGATGTTCTTCCAATCAAGAAAGGACCTCAACTTCCACCGAAACTCGGGCCACGTGGCAAGATCTAA
Protein sequenceShow/hide protein sequence
MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGG
GATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI