; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0002131 (gene) of Snake gourd v1 genome

Gene IDTan0002131
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposable element Tf2
Genome locationLG08:24185318..24191866
RNA-Seq ExpressionTan0002131
SyntenyTan0002131
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032923.1 polyprotein [Cucumis melo var. makuwa]2.5e-2539.05Show/hide
Query:  EIFPVPIQESFHYFSQTIHKNAFPLTMCFCLYFQTPWIFCLNFQINTYTYYKQIVKLLQIKWWDKYNFSHAGIKEVKQWFADTGYLQDLSKKKNAEFLNS
        EIFPV IQ S+H F Q+I+ +    T  F LYFQ PWIFC NFQ+     +K + K L IKWW+K+N+SH  + ++K WF    +LQD++++++  FL +
Subjt:  EIFPVPIQESFHYFSQTIHKNAFPLTMCFCLYFQTPWIFCLNFQINTYTYYKQIVKLLQIKWWDKYNFSHAGIKEVKQWFADTGYLQDLSKKKNAEFLNS

Query:  KSKLLATLAQTTTEANLQKILNQVT--------SIASSSSPQNSEVEEDGEY------DINDPFLDSQP
        K+ +++TLA  +T+     ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Subjt:  KSKLLATLAQTTTEANLQKILNQVT--------SIASSSSPQNSEVEEDGEY------DINDPFLDSQP

KAA0040832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]4.3e-2538.46Show/hide
Query:  EIFPVPIQESFHYFSQTIHKNAFPLTMCFCLYFQTPWIFCLNFQINTYTYYKQIVKLLQIKWWDKYNFSHAGIKEVKQWFADTGYLQDLSKKKNAEFLNS
        EIF V +Q S+H F Q+I+ +    T  F LYFQ PWIFC NFQ+ +   +K + K L+IKWW+K+N+SH  + ++K WF    +LQD++++++  FL +
Subjt:  EIFPVPIQESFHYFSQTIHKNAFPLTMCFCLYFQTPWIFCLNFQINTYTYYKQIVKLLQIKWWDKYNFSHAGIKEVKQWFADTGYLQDLSKKKNAEFLNS

Query:  KSKLLATLAQTTTEANLQKILNQVT--------SIASSSSPQNSEVEEDGEY------DINDPFLDSQP
        K+ +++TLA  +T+  L  ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Subjt:  KSKLLATLAQTTTEANLQKILNQVT--------SIASSSSPQNSEVEEDGEY------DINDPFLDSQP

KAA0050443.1 polyprotein [Cucumis melo var. makuwa]3.3e-2538.46Show/hide
Query:  EIFPVPIQESFHYFSQTIHKNAFPLTMCFCLYFQTPWIFCLNFQINTYTYYKQIVKLLQIKWWDKYNFSHAGIKEVKQWFADTGYLQDLSKKKNAEFLNS
        EIFPV +Q S+H F Q+I+ +    T  F LYFQ PWIFC NFQ+     +K + K L+IKWW+K+N+SH  + ++K WF    +LQD++++++  FL +
Subjt:  EIFPVPIQESFHYFSQTIHKNAFPLTMCFCLYFQTPWIFCLNFQINTYTYYKQIVKLLQIKWWDKYNFSHAGIKEVKQWFADTGYLQDLSKKKNAEFLNS

Query:  KSKLLATLAQTTTEANLQKILNQVT--------SIASSSSPQNSEVEEDGEY------DINDPFLDSQP
        K+ +++TLA  +T+     ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Subjt:  KSKLLATLAQTTTEANLQKILNQVT--------SIASSSSPQNSEVEEDGEY------DINDPFLDSQP

KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]3.3e-2538.46Show/hide
Query:  EIFPVPIQESFHYFSQTIHKNAFPLTMCFCLYFQTPWIFCLNFQINTYTYYKQIVKLLQIKWWDKYNFSHAGIKEVKQWFADTGYLQDLSKKKNAEFLNS
        EIFPV +Q S+H F Q+I+ +    T  F LYFQ PWIFC NFQ+     +K + K L+IKWW+K+N+SH  + ++K WF    +LQD++++++  FL +
Subjt:  EIFPVPIQESFHYFSQTIHKNAFPLTMCFCLYFQTPWIFCLNFQINTYTYYKQIVKLLQIKWWDKYNFSHAGIKEVKQWFADTGYLQDLSKKKNAEFLNS

Query:  KSKLLATLAQTTTEANLQKILNQVT--------SIASSSSPQNSEVEEDGEY------DINDPFLDSQP
        K+ +++TLA  +T+     ++N V          +    SP +    +D +Y      DINDPFLD+QP
Subjt:  KSKLLATLAQTTTEANLQKILNQVT--------SIASSSSPQNSEVEEDGEY------DINDPFLDSQP

TYK28077.1 polyprotein [Cucumis melo var. makuwa]2.5e-2539.05Show/hide
Query:  EIFPVPIQESFHYFSQTIHKNAFPLTMCFCLYFQTPWIFCLNFQINTYTYYKQIVKLLQIKWWDKYNFSHAGIKEVKQWFADTGYLQDLSKKKNAEFLNS
        EIFPV IQ S+H F Q+I+ +    T  F LYFQ PWIFC NFQ+     +K + K L IKWW+K+N+SH  + ++K WF    +LQD++++++  FL +
Subjt:  EIFPVPIQESFHYFSQTIHKNAFPLTMCFCLYFQTPWIFCLNFQINTYTYYKQIVKLLQIKWWDKYNFSHAGIKEVKQWFADTGYLQDLSKKKNAEFLNS

Query:  KSKLLATLAQTTTEANLQKILNQVT--------SIASSSSPQNSEVEEDGEY------DINDPFLDSQP
        K+ +++TLA  +T+     ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Subjt:  KSKLLATLAQTTTEANLQKILNQVT--------SIASSSSPQNSEVEEDGEY------DINDPFLDSQP

TrEMBL top hitse value%identityAlignment
A0A5A7SR64 Polyprotein1.2e-2539.05Show/hide
Query:  EIFPVPIQESFHYFSQTIHKNAFPLTMCFCLYFQTPWIFCLNFQINTYTYYKQIVKLLQIKWWDKYNFSHAGIKEVKQWFADTGYLQDLSKKKNAEFLNS
        EIFPV IQ S+H F Q+I+ +    T  F LYFQ PWIFC NFQ+     +K + K L IKWW+K+N+SH  + ++K WF    +LQD++++++  FL +
Subjt:  EIFPVPIQESFHYFSQTIHKNAFPLTMCFCLYFQTPWIFCLNFQINTYTYYKQIVKLLQIKWWDKYNFSHAGIKEVKQWFADTGYLQDLSKKKNAEFLNS

Query:  KSKLLATLAQTTTEANLQKILNQVT--------SIASSSSPQNSEVEEDGEY------DINDPFLDSQP
        K+ +++TLA  +T+     ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Subjt:  KSKLLATLAQTTTEANLQKILNQVT--------SIASSSSPQNSEVEEDGEY------DINDPFLDSQP

A0A5A7U3G5 Polyprotein1.6e-2538.46Show/hide
Query:  EIFPVPIQESFHYFSQTIHKNAFPLTMCFCLYFQTPWIFCLNFQINTYTYYKQIVKLLQIKWWDKYNFSHAGIKEVKQWFADTGYLQDLSKKKNAEFLNS
        EIFPV +Q S+H F Q+I+ +    T  F LYFQ PWIFC NFQ+     +K + K L+IKWW+K+N+SH  + ++K WF    +LQD++++++  FL +
Subjt:  EIFPVPIQESFHYFSQTIHKNAFPLTMCFCLYFQTPWIFCLNFQINTYTYYKQIVKLLQIKWWDKYNFSHAGIKEVKQWFADTGYLQDLSKKKNAEFLNS

Query:  KSKLLATLAQTTTEANLQKILNQVT--------SIASSSSPQNSEVEEDGEY------DINDPFLDSQP
        K+ +++TLA  +T+     ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Subjt:  KSKLLATLAQTTTEANLQKILNQVT--------SIASSSSPQNSEVEEDGEY------DINDPFLDSQP

A0A5A7U3G5 Polyprotein7.9e-0137.37Show/hide
Query:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSTSLIRPTA-VTPMRPSISPTTPSSSQQGSSIPTTF---VEAEIFPVPIQESFHYFSQT
        MSA+ YAMDL F QV+R    SA   +    +S + PP PST+L+RP+   TP + + SPT  SS       P+++   V  ++F  P      YF++T
Subjt:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSTSLIRPTA-VTPMRPSISPTTPSSSQQGSSIPTTF---VEAEIFPVPIQESFHYFSQT

A0A5A7U3G5 Polyprotein1.6e-2538.46Show/hide
Query:  EIFPVPIQESFHYFSQTIHKNAFPLTMCFCLYFQTPWIFCLNFQINTYTYYKQIVKLLQIKWWDKYNFSHAGIKEVKQWFADTGYLQDLSKKKNAEFLNS
        EIFPV +Q S+H F Q+I+ +    T  F LYFQ PWIFC NFQ+     +K + K L+IKWW+K+N+SH  + ++K WF    +LQD++++++  FL +
Subjt:  EIFPVPIQESFHYFSQTIHKNAFPLTMCFCLYFQTPWIFCLNFQINTYTYYKQIVKLLQIKWWDKYNFSHAGIKEVKQWFADTGYLQDLSKKKNAEFLNS

Query:  KSKLLATLAQTTTEANLQKILNQVT--------SIASSSSPQNSEVEEDGEY------DINDPFLDSQP
        K+ +++TLA  +T+     ++N V          +    SP +    +D +Y      DINDPFLD+QP
Subjt:  KSKLLATLAQTTTEANLQKILNQVT--------SIASSSSPQNSEVEEDGEY------DINDPFLDSQP

A0A5A7UVN1 Retrotransposable element Tf21.2e-0143.06Show/hide
Query:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSTSLIRPTAVTPMRPSISPTTPSSSQQGSSIP
        MSA+ YAMDL F QV+R R  SA   +    +S + PP PST+L+RP+   P  P+    +P++S   S+IP
Subjt:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSTSLIRPTAVTPMRPSISPTTPSSSQQGSSIP

A0A5A7V6D1 Retrotransposable element Tf21.2e-0143.06Show/hide
Query:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSTSLIRPTAVTPMRPSISPTTPSSSQQGSSIP
        MSA+ YAMDL F QV+R R  SA   +    +S + PP PST+L+RP+   P  P+    +P++S   S+IP
Subjt:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSTSLIRPTAVTPMRPSISPTTPSSSQQGSSIP

A0A5A7V6D1 Retrotransposable element Tf22.1e-2538.46Show/hide
Query:  EIFPVPIQESFHYFSQTIHKNAFPLTMCFCLYFQTPWIFCLNFQINTYTYYKQIVKLLQIKWWDKYNFSHAGIKEVKQWFADTGYLQDLSKKKNAEFLNS
        EIFPV +Q S+H F Q+I+ +    T  F LYFQ PWIFC NFQ+     +K + K L+IKWW+K+N+SH  + ++K WF    +LQD++++++  FL +
Subjt:  EIFPVPIQESFHYFSQTIHKNAFPLTMCFCLYFQTPWIFCLNFQINTYTYYKQIVKLLQIKWWDKYNFSHAGIKEVKQWFADTGYLQDLSKKKNAEFLNS

Query:  KSKLLATLAQTTTEANLQKILNQVT--------SIASSSSPQNSEVEEDGEY------DINDPFLDSQP
        K+ +++TLA  +T+     ++N V          +    SP +    +D +Y      DINDPFLD+QP
Subjt:  KSKLLATLAQTTTEANLQKILNQVT--------SIASSSSPQNSEVEEDGEY------DINDPFLDSQP

A0A5D3DW87 Polyprotein1.2e-2539.05Show/hide
Query:  EIFPVPIQESFHYFSQTIHKNAFPLTMCFCLYFQTPWIFCLNFQINTYTYYKQIVKLLQIKWWDKYNFSHAGIKEVKQWFADTGYLQDLSKKKNAEFLNS
        EIFPV IQ S+H F Q+I+ +    T  F LYFQ PWIFC NFQ+     +K + K L IKWW+K+N+SH  + ++K WF    +LQD++++++  FL +
Subjt:  EIFPVPIQESFHYFSQTIHKNAFPLTMCFCLYFQTPWIFCLNFQINTYTYYKQIVKLLQIKWWDKYNFSHAGIKEVKQWFADTGYLQDLSKKKNAEFLNS

Query:  KSKLLATLAQTTTEANLQKILNQVT--------SIASSSSPQNSEVEEDGEY------DINDPFLDSQP
        K+ +++TLA  +T+     ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Subjt:  KSKLLATLAQTTTEANLQKILNQVT--------SIASSSSPQNSEVEEDGEY------DINDPFLDSQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGCCGATCAATACGCAATGGATCTGGGTTTCACTCAAGTGAATCGCCCAAGAACCAGAAGCGCATCGATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACC
ACCAAGGCCATCAACCTCCCTCATACGGCCTACTGCCGTTACACCAATGAGACCTTCCATCTCACCTACTACTCCGTCTTCATCTCAACAGGGATCTTCAATCCCTACAA
CCTTTGTTGAAGCCGAAATCTTTCCAGTTCCAATTCAAGAATCATTCCATTATTTTTCACAAACAATACACAAAAATGCATTCCCACTCACAATGTGTTTTTGTTTATAC
TTTCAAACCCCTTGGATATTCTGTTTGAATTTCCAAATCAATACATACACCTATTACAAACAAATCGTAAAACTTTTACAAATCAAATGGTGGGACAAGTACAACTTTTC
TCACGCAGGAATCAAAGAAGTGAAGCAATGGTTTGCCGATACTGGCTACCTCCAAGACCTGTCAAAAAAGAAAAATGCAGAGTTCCTCAATTCCAAATCAAAGCTGCTAG
CTACCTTAGCACAAACAACAACAGAGGCAAATTTACAAAAAATTTTGAATCAAGTTACTTCAATAGCATCTTCGTCTTCTCCACAAAACTCTGAAGTGGAAGAAGATGGT
GAATATGATATCAATGATCCGTTTTTAGATTCTCAACCAATAATCGAATCTTTTACTTTTCGTACATTTTGTTTTTTTGTAATCATTTTATCTTTTGTCATATCAATCCA
GTCAGGGGTCTTGTCCTCCTCACGCCCACGTTCCTCGCGAAACTTCTGCGAACTGCACCTCAACGCACGCACTATTGCAACGCCAACCTTTCTTCACGTTTTCCTCCTGA
GGTCACGAACCTTTCGTGTACTCGTCCTCAACGATCTCGATCTTCTCGAACGAACAAGCGATCTGGACACTTCCACTCAGTTTTTCGGTTGTTCTACTTTTGGTAGAAGG
AGAATGGTGGGATTTCTTCTTTGTTTCCAACTCCCTACTTGGTCTTTTACATCTAATGGTTACTATTTCACGGTAAAGTCTTATGTGAACTCATCACATAGGACACCTCC
ACTCACATGTCGCTTACACGAACACGTTGGATCACAGTGTTTGTATCAAATATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGCCGATCAATACGCAATGGATCTGGGTTTCACTCAAGTGAATCGCCCAAGAACCAGAAGCGCATCGATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACC
ACCAAGGCCATCAACCTCCCTCATACGGCCTACTGCCGTTACACCAATGAGACCTTCCATCTCACCTACTACTCCGTCTTCATCTCAACAGGGATCTTCAATCCCTACAA
CCTTTGTTGAAGCCGAAATCTTTCCAGTTCCAATTCAAGAATCATTCCATTATTTTTCACAAACAATACACAAAAATGCATTCCCACTCACAATGTGTTTTTGTTTATAC
TTTCAAACCCCTTGGATATTCTGTTTGAATTTCCAAATCAATACATACACCTATTACAAACAAATCGTAAAACTTTTACAAATCAAATGGTGGGACAAGTACAACTTTTC
TCACGCAGGAATCAAAGAAGTGAAGCAATGGTTTGCCGATACTGGCTACCTCCAAGACCTGTCAAAAAAGAAAAATGCAGAGTTCCTCAATTCCAAATCAAAGCTGCTAG
CTACCTTAGCACAAACAACAACAGAGGCAAATTTACAAAAAATTTTGAATCAAGTTACTTCAATAGCATCTTCGTCTTCTCCACAAAACTCTGAAGTGGAAGAAGATGGT
GAATATGATATCAATGATCCGTTTTTAGATTCTCAACCAATAATCGAATCTTTTACTTTTCGTACATTTTGTTTTTTTGTAATCATTTTATCTTTTGTCATATCAATCCA
GTCAGGGGTCTTGTCCTCCTCACGCCCACGTTCCTCGCGAAACTTCTGCGAACTGCACCTCAACGCACGCACTATTGCAACGCCAACCTTTCTTCACGTTTTCCTCCTGA
GGTCACGAACCTTTCGTGTACTCGTCCTCAACGATCTCGATCTTCTCGAACGAACAAGCGATCTGGACACTTCCACTCAGTTTTTCGGTTGTTCTACTTTTGGTAGAAGG
AGAATGGTGGGATTTCTTCTTTGTTTCCAACTCCCTACTTGGTCTTTTACATCTAATGGTTACTATTTCACGGTAAAGTCTTATGTGAACTCATCACATAGGACACCTCC
ACTCACATGTCGCTTACACGAACACGTTGGATCACAGTGTTTGTATCAAATATAA
Protein sequenceShow/hide protein sequence
MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSTSLIRPTAVTPMRPSISPTTPSSSQQGSSIPTTFVEAEIFPVPIQESFHYFSQTIHKNAFPLTMCFCLY
FQTPWIFCLNFQINTYTYYKQIVKLLQIKWWDKYNFSHAGIKEVKQWFADTGYLQDLSKKKNAEFLNSKSKLLATLAQTTTEANLQKILNQVTSIASSSSPQNSEVEEDG
EYDINDPFLDSQPIIESFTFRTFCFFVIILSFVISIQSGVLSSSRPRSSRNFCELHLNARTIATPTFLHVFLLRSRTFRVLVLNDLDLLERTSDLDTSTQFFGCSTFGRR
RMVGFLLCFQLPTWSFTSNGYYFTVKSYVNSSHRTPPLTCRLHEHVGSQCLYQI