| GenBank top hits | e value | %identity | Alignment |
|---|
| ADJ18449.1 gag/pol protein, partial [Bryonia dioica] | 7.7e-145 | 42.61 | Show/hide |
Query: MSSSFIALLKMERLTGEKFTTWKSNLDAILVVDNLRFVLTEECPQIPAQDAPQSVKDAFYRWAKANEKA-AYILAGTSDVLARRLQGMVSAREIMGYLQT
M++S + LL E+L G+ ++ WKSNL+ ILVVD+LRFVLTEECPQ PA +A ++V++A+ RW KAN+KA YILA +DVLA++ + +A+ IM L+
Subjt: MSSSFIALLKMERLTGEKFTTWKSNLDAILVVDNLRFVLTEECPQIPAQDAPQSVKDAFYRWAKANEKA-AYILAGTSDVLARRLQGMVSAREIMGYLQT
Query: LSRQPSEQIQHESIKYVYNARMKEGTSVREHVLDLIVHFNVAEMNG------------------------RNAELNKKEYNLTSLLNELQSFESLIKNKR
+ QPS ++HE+IK++Y RMKEGTSVREHVLD+++HFN+AE+NG NA LNK E+NLT+LLNELQ F++L +K
Subjt: LSRQPSEQIQHESIKYVYNARMKEGTSVREHVLDLIVHFNVAEMNG------------------------RNAELNKKEYNLTSLLNELQSFESLIKNKR
Query: HADGEVNLFAHSKRFQKGSSSGTKPCGSTRKKRKGGKGKGSATADIE------------------------LKEKK------------------------
+ E N+ ++F +GSSS K S + +K GKGK T+ ++ L EKK
Subjt: HADGEVNLFAHSKRFQKGSSSGTKPCGSTRKKRKGGKGKGSATADIE------------------------LKEKK------------------------
Query: ------GATNHVCSSFQETSSFKELEE-------------------------------------------------------------------------
GATNH+C SFQETSS+K+L+E
Subjt: ------GATNHVCSSFQETSSFKELEE-------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ------------VNAKTRGGYKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYMIEHGIKSQLSAPNTP
+N K RGGY+YFISFI D+SRYG++YL+HHKSE EKFKEYKAEVEN +GKTIKTL+SDRGGEYMD +FQDY+IE GI+SQLSAP+TP
Subjt: ------------VNAKTRGGYKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYMIEHGIKSQLSAPNTP
Query: QQNGVSERRNRTLLDMVRSMMSYAQLPASFWGYAVETAVQILNSVPSKSVSETPFELWKGRKPSLQHFRIWGCPTHVLVTNPKKLEPRSRLCQFVGYSKE
QQNGVSERRNRTLLDMVRSMMSYAQLP SFWGYA+ETA+ ILN+VPSKSV ETP+ELWKGRK SL++FRIWGCP HVLV NPKKLEPRS+LC FVGY KE
Subjt: QQNGVSERRNRTLLDMVRSMMSYAQLPASFWGYAVETAVQILNSVPSKSVSETPFELWKGRKPSLQHFRIWGCPTHVLVTNPKKLEPRSRLCQFVGYSKE
Query: TRGGLFYDPQENKVIVSTNTTFLKEDHMRNHKLRSKLVLNE----ATHEP---TRVVNQAGPSSR
+RGGLFY PQENKV VSTN TFL+EDH RNH+ RSK+VL E AT +P T+VV++A S +
Subjt: TRGGLFYDPQENKVIVSTNTTFLKEDHMRNHKLRSKLVLNE----ATHEP---TRVVNQAGPSSR
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| KAA0026233.1 gag/pol protein [Cucumis melo var. makuwa] | 4.3e-156 | 54.34 | Show/hide |
Query: MSSSFIALLKMERLTGEKFTTWKSNLDAILVVDNLRFVLTEECPQIPAQDAPQSVKDAFYRWAKANEKA-AYILAGTSDVLARRLQGMVSAREIMGYLQT
+SS+ + +L ++L G + +WK+ ++ +L++D+LRFVL E+CPQ+PA +A ++V++ + RWAKANEKA AYILA S+VLA++ + M++AREIM LQ
Subjt: MSSSFIALLKMERLTGEKFTTWKSNLDAILVVDNLRFVLTEECPQIPAQDAPQSVKDAFYRWAKANEKA-AYILAGTSDVLARRLQGMVSAREIMGYLQT
Query: LSRQPSEQIQHESIKYVYNARMKEGTSVREHVLDLIVHFNVAEMN------------------------GRNAELNKKEYNLTSLLNELQSFESLIKNKR
+ Q S QI+H+++KY+YNARM EG SVREHVL+++VHFNVA MN NA +NK Y LT+LLNELQ+FESL+K K
Subjt: LSRQPSEQIQHESIKYVYNARMKEGTSVREHVLDLIVHFNVAEMN------------------------GRNAELNKKEYNLTSLLNELQSFESLIKNKR
Query: HADGEVNLFAHSKRFQKGSSSGTKPCGSTR-----KKRKGGKGKGSATADIELKEKKGATNHVCSSFQETSSFKE-------------------------
GE N+ +++F +GS+SGTK S+ KK+KGG+G + A + +K A +C + +K
Subjt: HADGEVNLFAHSKRFQKGSSSGTKPCGSTR-----KKRKGGKGKGSATADIELKEKKGATNHVCSSFQETSSFKE-------------------------
Query: -------LEEV--------NAKTRGGYKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYMIEHGIKSQL
LE V N K RGG++YFI+F DYSRYGY+YLM HKSE LEKFKEYKAEVENAL KTIKT +SDRGGEYMDL+FQ+Y++E GI SQL
Subjt: -------LEEV--------NAKTRGGYKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYMIEHGIKSQL
Query: SAPNTPQQNGVSERRNRTLLDMVRSMMSYAQLPASFWGYAVETAVQILNSVPSKSVSETPFELWKGRKPSLQHFRIWGCPTHVLVTNPKKLEPRSRLCQF
SAP+TPQQNGVSERRNRTLLDMVRSMMSYA LP SFWGYAV+TAV ILN VPSKSVSETP +LW G K SL+HFRIWGCP HVL NPKKLEPRS+LC F
Subjt: SAPNTPQQNGVSERRNRTLLDMVRSMMSYAQLPASFWGYAVETAVQILNSVPSKSVSETPFELWKGRKPSLQHFRIWGCPTHVLVTNPKKLEPRSRLCQF
Query: VGYSKETRGGLFYDPQENKVIVSTNTTFLKEDHMRNHKLRSKLVLNEATHEPTRVVNQAGPSSRV
VGY K TRGG FYDP++NKV VSTN TFL+EDH+R HK RSK+VLNE + E T PS+RV
Subjt: VGYSKETRGGLFYDPQENKVIVSTNTTFLKEDHMRNHKLRSKLVLNEATHEPTRVVNQAGPSSRV
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| KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa] | 3.0e-157 | 54.13 | Show/hide |
Query: MSSSFIALLKMERLTGEKFTTWKSNLDAILVVDNLRFVLTEECPQIPAQDAPQSVKDAFYRWAKANEKA-AYILAGTSDVLARRLQGMVSAREIMGYLQT
M+S+ + +L ++L G + +WK+ ++ +L++D+LRFVL EECPQ+PA +A ++V++ + RWAKANEKA AYILA S+VLA++ + M++AREIM LQ
Subjt: MSSSFIALLKMERLTGEKFTTWKSNLDAILVVDNLRFVLTEECPQIPAQDAPQSVKDAFYRWAKANEKA-AYILAGTSDVLARRLQGMVSAREIMGYLQT
Query: LSRQPSEQIQHESIKYVYNARMKEGTSVREHVLDLIVHFNVAEMNG------------------------RNAELNKKEYNLTSLLNELQSFESLIKNKR
+ Q S QI+H+++KY+YNARM EG SVREHVL+++VHFNVAEMNG NA +NK Y LT+LLNELQ+FESL+K K
Subjt: LSRQPSEQIQHESIKYVYNARMKEGTSVREHVLDLIVHFNVAEMNG------------------------RNAELNKKEYNLTSLLNELQSFESLIKNKR
Query: HADGEVNLFAHSKRFQKGSSSGTKPCGSTR-----KKRKGGKGKGSATADIELKEKKGATNHVCSSFQETSSFKE-------------------------
GE N+ +++F +GS+SGTK S+ KK+KGG+G + A + +K A +C + +K
Subjt: HADGEVNLFAHSKRFQKGSSSGTKPCGSTR-----KKRKGGKGKGSATADIELKEKKGATNHVCSSFQETSSFKE-------------------------
Query: -------LEEV--------NAKTRGGYKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYMIEHGIKSQL
LE V N K RGG++YFI+F DYSRYGY+YLM HKSE LEKFKEYKAEVENAL KTIKT +SDRGGEYMDL+FQ+Y++E GI SQL
Subjt: -------LEEV--------NAKTRGGYKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYMIEHGIKSQL
Query: SAPNTPQQNGVSERRNRTLLDMVRSMMSYAQLPASFWGYAVETAVQILNSVPSKSVSETPFELWKGRKPSLQHFRIWGCPTHVLVTNPKKLEPRSRLCQF
S P TPQQNGVS+RRNRTLLDMVRSMMSY LP SFWGYAV+TAV ILN VPSKSVS+TP +LW GRK SL+HFRIWGCP HVL NPKKLEPRS+LC F
Subjt: SAPNTPQQNGVSERRNRTLLDMVRSMMSYAQLPASFWGYAVETAVQILNSVPSKSVSETPFELWKGRKPSLQHFRIWGCPTHVLVTNPKKLEPRSRLCQF
Query: VGYSKETRGGLFYDPQENKVIVSTNTTFLKEDHMRNHKLRSKLVLN----EATHEPTRVVNQAGPSSRV
VGY K TRGG FYDP++NKV VSTN TFL+EDH+R HK RSK+VLN E T TRVV + +RV
Subjt: VGYSKETRGGLFYDPQENKVIVSTNTTFLKEDHMRNHKLRSKLVLN----EATHEPTRVVNQAGPSSRV
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| TYJ97618.1 gag/pol protein [Cucumis melo var. makuwa] | 9.1e-146 | 50.17 | Show/hide |
Query: MSSSFIALLKMERLTGEKFTTWKSNLDAILVVDNLRFVLTEECPQIPAQDAPQSVKDAFYRWAKANEKA-AYILAGTSDVLARRLQGMVSAREIMGYLQT
M+++ + +L ++L G + +WK+ ++ +L++D+L+FVL EECPQ+PA +A Q+V++ + RWAK NEK AYILA S+VLA++ + M++AREIM LQ
Subjt: MSSSFIALLKMERLTGEKFTTWKSNLDAILVVDNLRFVLTEECPQIPAQDAPQSVKDAFYRWAKANEKA-AYILAGTSDVLARRLQGMVSAREIMGYLQT
Query: LSRQPSEQIQHESIKYVYNARMKEGTSVREHVLDLIVHFNVAEMNGRNAELNKKEYNLTSLLNELQSFESLIKNKRHADGEVNLFAHSKRFQKGSSSGTK
+ Q S QI H+++KY+YNARM EG SVREHVL+++VHFNVAEMNG ++++E + GE N+ +++F +GS+SGTK
Subjt: LSRQPSEQIQHESIKYVYNARMKEGTSVREHVLDLIVHFNVAEMNGRNAELNKKEYNLTSLLNELQSFESLIKNKRHADGEVNLFAHSKRFQKGSSSGTK
Query: PCGSTR-----KKRKGGKGKGSATADIELKEKKGATNHVCSSFQETSSFK---------------------------------ELEE-------------
S+ KK+KGG+G + A + +K AT +C + + +K ELEE
Subjt: PCGSTR-----KKRKGGKGKGSATADIELKEKKGATNHVCSSFQETSSFK---------------------------------ELEE-------------
Query: ---------------------------VNAKTRGGYKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYM
+N K RG ++YFI+F DYSRYGY+YLM HKSE LEKFKEYKAEVENAL KTIKT +SDRGGEYMDL+FQ+Y+
Subjt: ---------------------------VNAKTRGGYKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYM
Query: IEHGIKSQLSAPNTPQQNGVSERRNRTLLDMVRSMMSYAQLPASFWGYAVETAVQILNSVPSKSVSETPFELWKGRKPSLQHFRIWGCPTHVLVTNPKKL
+E I SQLSAP TPQQNGVSERRNRTLLDMVRSM+SYA LP SFWGYAV+TAV ILN VPSKSVSETP +LW GRK SL+HFRIWGCP HVL NPKKL
Subjt: IEHGIKSQLSAPNTPQQNGVSERRNRTLLDMVRSMMSYAQLPASFWGYAVETAVQILNSVPSKSVSETPFELWKGRKPSLQHFRIWGCPTHVLVTNPKKL
Query: EPRSRLCQFVGYSKETRGGLFYDPQENKVIVSTNTTFLKEDHMRNHKLRSKLVLN----EATHEPTRVVNQAGPSSRV
EPRS+LC FVGY K TRGG FYDP++NKV VSTN TFL+EDH+R HK RSK+VLN E T TRVV + +RV
Subjt: EPRSRLCQFVGYSKETRGGLFYDPQENKVIVSTNTTFLKEDHMRNHKLRSKLVLN----EATHEPTRVVNQAGPSSRV
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| TYK00843.1 gag/pol protein [Cucumis melo var. makuwa] | 3.4e-145 | 58.94 | Show/hide |
Query: MSSSFIALLKMERLTGEKFTTWKSNLDAILVVDNLRFVLTEECPQIPAQDAPQSVKDAFYRWAKANEKAA-YILAGTSDVLARRLQGMVSAREIMGYLQT
MSSS IALLK E LTGE + WKS L+ ILV+ +LRF+L EECP P Q+A +S++DA+ R KAN+KA YILA SD+L+++ + MV+AR+IM +
Subjt: MSSSFIALLKMERLTGEKFTTWKSNLDAILVVDNLRFVLTEECPQIPAQDAPQSVKDAFYRWAKANEKAA-YILAGTSDVLARRLQGMVSAREIMGYLQT
Query: LSRQPSEQIQHESIKYVYNARMKEGTSVREHVLDLIVHFNVAEMNGRNAELNKKEYNLTSLLNELQSFESLIKNKRHADGEVNLFAHSKRFQKGSSSGTK
L RQPS QI+ E+IKYVYNA MKEG SVREH LD+IV+FNVAEMNG A +++K +L K GE N+ AH +RF SS K
Subjt: LSRQPSEQIQHESIKYVYNARMKEGTSVREHVLDLIVHFNVAEMNGRNAELNKKEYNLTSLLNELQSFESLIKNKRHADGEVNLFAHSKRFQKGSSSGTK
Query: PCGSTRKKRKGGKGKGSATADIELKEKKGATNHVCSSFQETSSFKELEEVNAKTRGGYKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGK
+K KG KGKG AD DYSRYGYLYLM HKS+ LEKFKEYKA+V+N L +
Subjt: PCGSTRKKRKGGKGKGSATADIELKEKKGATNHVCSSFQETSSFKELEEVNAKTRGGYKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGK
Query: TIKTLQSDRGGEYMDLRFQDYMIEHGIKSQLSAPNTPQQNGVSERRNRTLLDMVRSMMSYAQLPASFWGYAVETAVQILNSVPSKSVSETPFELWKGRKP
K LQSD+GGEYMDLRFQ YMIEHGI+SQLSAP TPQ N VS+RR RTLLDMV SMMSY QLP++FWGY +ETAV ILN+V SKSVSETPF+LWK RKP
Subjt: TIKTLQSDRGGEYMDLRFQDYMIEHGIKSQLSAPNTPQQNGVSERRNRTLLDMVRSMMSYAQLPASFWGYAVETAVQILNSVPSKSVSETPFELWKGRKP
Query: SLQHFRIWGCPTHVLVTNPKKLEPRSRLCQFVGYSKETRGGLFYDPQENKVIVSTNTTFLKEDHMRNHKLRSKLVLNEATHEPTRVVNQAGP
SL HFRIWGCPTHV VTN KKLEPRSRLCQF+GY KETRGGLF+DPQEN+V VSTN TFL+EDHMR+HK +SKLVLNE T E TRVV++ GP
Subjt: SLQHFRIWGCPTHVLVTNPKKLEPRSRLCQFVGYSKETRGGLFYDPQENKVIVSTNTTFLKEDHMRNHKLRSKLVLNEATHEPTRVVNQAGP
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SNP8 Gag/pol protein | 2.1e-156 | 54.34 | Show/hide |
Query: MSSSFIALLKMERLTGEKFTTWKSNLDAILVVDNLRFVLTEECPQIPAQDAPQSVKDAFYRWAKANEKA-AYILAGTSDVLARRLQGMVSAREIMGYLQT
+SS+ + +L ++L G + +WK+ ++ +L++D+LRFVL E+CPQ+PA +A ++V++ + RWAKANEKA AYILA S+VLA++ + M++AREIM LQ
Subjt: MSSSFIALLKMERLTGEKFTTWKSNLDAILVVDNLRFVLTEECPQIPAQDAPQSVKDAFYRWAKANEKA-AYILAGTSDVLARRLQGMVSAREIMGYLQT
Query: LSRQPSEQIQHESIKYVYNARMKEGTSVREHVLDLIVHFNVAEMN------------------------GRNAELNKKEYNLTSLLNELQSFESLIKNKR
+ Q S QI+H+++KY+YNARM EG SVREHVL+++VHFNVA MN NA +NK Y LT+LLNELQ+FESL+K K
Subjt: LSRQPSEQIQHESIKYVYNARMKEGTSVREHVLDLIVHFNVAEMN------------------------GRNAELNKKEYNLTSLLNELQSFESLIKNKR
Query: HADGEVNLFAHSKRFQKGSSSGTKPCGSTR-----KKRKGGKGKGSATADIELKEKKGATNHVCSSFQETSSFKE-------------------------
GE N+ +++F +GS+SGTK S+ KK+KGG+G + A + +K A +C + +K
Subjt: HADGEVNLFAHSKRFQKGSSSGTKPCGSTR-----KKRKGGKGKGSATADIELKEKKGATNHVCSSFQETSSFKE-------------------------
Query: -------LEEV--------NAKTRGGYKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYMIEHGIKSQL
LE V N K RGG++YFI+F DYSRYGY+YLM HKSE LEKFKEYKAEVENAL KTIKT +SDRGGEYMDL+FQ+Y++E GI SQL
Subjt: -------LEEV--------NAKTRGGYKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYMIEHGIKSQL
Query: SAPNTPQQNGVSERRNRTLLDMVRSMMSYAQLPASFWGYAVETAVQILNSVPSKSVSETPFELWKGRKPSLQHFRIWGCPTHVLVTNPKKLEPRSRLCQF
SAP+TPQQNGVSERRNRTLLDMVRSMMSYA LP SFWGYAV+TAV ILN VPSKSVSETP +LW G K SL+HFRIWGCP HVL NPKKLEPRS+LC F
Subjt: SAPNTPQQNGVSERRNRTLLDMVRSMMSYAQLPASFWGYAVETAVQILNSVPSKSVSETPFELWKGRKPSLQHFRIWGCPTHVLVTNPKKLEPRSRLCQF
Query: VGYSKETRGGLFYDPQENKVIVSTNTTFLKEDHMRNHKLRSKLVLNEATHEPTRVVNQAGPSSRV
VGY K TRGG FYDP++NKV VSTN TFL+EDH+R HK RSK+VLNE + E T PS+RV
Subjt: VGYSKETRGGLFYDPQENKVIVSTNTTFLKEDHMRNHKLRSKLVLNEATHEPTRVVNQAGPSSRV
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| A0A5A7U869 Gag/pol protein | 1.5e-157 | 54.13 | Show/hide |
Query: MSSSFIALLKMERLTGEKFTTWKSNLDAILVVDNLRFVLTEECPQIPAQDAPQSVKDAFYRWAKANEKA-AYILAGTSDVLARRLQGMVSAREIMGYLQT
M+S+ + +L ++L G + +WK+ ++ +L++D+LRFVL EECPQ+PA +A ++V++ + RWAKANEKA AYILA S+VLA++ + M++AREIM LQ
Subjt: MSSSFIALLKMERLTGEKFTTWKSNLDAILVVDNLRFVLTEECPQIPAQDAPQSVKDAFYRWAKANEKA-AYILAGTSDVLARRLQGMVSAREIMGYLQT
Query: LSRQPSEQIQHESIKYVYNARMKEGTSVREHVLDLIVHFNVAEMNG------------------------RNAELNKKEYNLTSLLNELQSFESLIKNKR
+ Q S QI+H+++KY+YNARM EG SVREHVL+++VHFNVAEMNG NA +NK Y LT+LLNELQ+FESL+K K
Subjt: LSRQPSEQIQHESIKYVYNARMKEGTSVREHVLDLIVHFNVAEMNG------------------------RNAELNKKEYNLTSLLNELQSFESLIKNKR
Query: HADGEVNLFAHSKRFQKGSSSGTKPCGSTR-----KKRKGGKGKGSATADIELKEKKGATNHVCSSFQETSSFKE-------------------------
GE N+ +++F +GS+SGTK S+ KK+KGG+G + A + +K A +C + +K
Subjt: HADGEVNLFAHSKRFQKGSSSGTKPCGSTR-----KKRKGGKGKGSATADIELKEKKGATNHVCSSFQETSSFKE-------------------------
Query: -------LEEV--------NAKTRGGYKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYMIEHGIKSQL
LE V N K RGG++YFI+F DYSRYGY+YLM HKSE LEKFKEYKAEVENAL KTIKT +SDRGGEYMDL+FQ+Y++E GI SQL
Subjt: -------LEEV--------NAKTRGGYKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYMIEHGIKSQL
Query: SAPNTPQQNGVSERRNRTLLDMVRSMMSYAQLPASFWGYAVETAVQILNSVPSKSVSETPFELWKGRKPSLQHFRIWGCPTHVLVTNPKKLEPRSRLCQF
S P TPQQNGVS+RRNRTLLDMVRSMMSY LP SFWGYAV+TAV ILN VPSKSVS+TP +LW GRK SL+HFRIWGCP HVL NPKKLEPRS+LC F
Subjt: SAPNTPQQNGVSERRNRTLLDMVRSMMSYAQLPASFWGYAVETAVQILNSVPSKSVSETPFELWKGRKPSLQHFRIWGCPTHVLVTNPKKLEPRSRLCQF
Query: VGYSKETRGGLFYDPQENKVIVSTNTTFLKEDHMRNHKLRSKLVLN----EATHEPTRVVNQAGPSSRV
VGY K TRGG FYDP++NKV VSTN TFL+EDH+R HK RSK+VLN E T TRVV + +RV
Subjt: VGYSKETRGGLFYDPQENKVIVSTNTTFLKEDHMRNHKLRSKLVLN----EATHEPTRVVNQAGPSSRV
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| A0A5D3BHG7 Gag/pol protein | 4.4e-146 | 50.17 | Show/hide |
Query: MSSSFIALLKMERLTGEKFTTWKSNLDAILVVDNLRFVLTEECPQIPAQDAPQSVKDAFYRWAKANEKA-AYILAGTSDVLARRLQGMVSAREIMGYLQT
M+++ + +L ++L G + +WK+ ++ +L++D+L+FVL EECPQ+PA +A Q+V++ + RWAK NEK AYILA S+VLA++ + M++AREIM LQ
Subjt: MSSSFIALLKMERLTGEKFTTWKSNLDAILVVDNLRFVLTEECPQIPAQDAPQSVKDAFYRWAKANEKA-AYILAGTSDVLARRLQGMVSAREIMGYLQT
Query: LSRQPSEQIQHESIKYVYNARMKEGTSVREHVLDLIVHFNVAEMNGRNAELNKKEYNLTSLLNELQSFESLIKNKRHADGEVNLFAHSKRFQKGSSSGTK
+ Q S QI H+++KY+YNARM EG SVREHVL+++VHFNVAEMNG ++++E + GE N+ +++F +GS+SGTK
Subjt: LSRQPSEQIQHESIKYVYNARMKEGTSVREHVLDLIVHFNVAEMNGRNAELNKKEYNLTSLLNELQSFESLIKNKRHADGEVNLFAHSKRFQKGSSSGTK
Query: PCGSTR-----KKRKGGKGKGSATADIELKEKKGATNHVCSSFQETSSFK---------------------------------ELEE-------------
S+ KK+KGG+G + A + +K AT +C + + +K ELEE
Subjt: PCGSTR-----KKRKGGKGKGSATADIELKEKKGATNHVCSSFQETSSFK---------------------------------ELEE-------------
Query: ---------------------------VNAKTRGGYKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYM
+N K RG ++YFI+F DYSRYGY+YLM HKSE LEKFKEYKAEVENAL KTIKT +SDRGGEYMDL+FQ+Y+
Subjt: ---------------------------VNAKTRGGYKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYM
Query: IEHGIKSQLSAPNTPQQNGVSERRNRTLLDMVRSMMSYAQLPASFWGYAVETAVQILNSVPSKSVSETPFELWKGRKPSLQHFRIWGCPTHVLVTNPKKL
+E I SQLSAP TPQQNGVSERRNRTLLDMVRSM+SYA LP SFWGYAV+TAV ILN VPSKSVSETP +LW GRK SL+HFRIWGCP HVL NPKKL
Subjt: IEHGIKSQLSAPNTPQQNGVSERRNRTLLDMVRSMMSYAQLPASFWGYAVETAVQILNSVPSKSVSETPFELWKGRKPSLQHFRIWGCPTHVLVTNPKKL
Query: EPRSRLCQFVGYSKETRGGLFYDPQENKVIVSTNTTFLKEDHMRNHKLRSKLVLN----EATHEPTRVVNQAGPSSRV
EPRS+LC FVGY K TRGG FYDP++NKV VSTN TFL+EDH+R HK RSK+VLN E T TRVV + +RV
Subjt: EPRSRLCQFVGYSKETRGGLFYDPQENKVIVSTNTTFLKEDHMRNHKLRSKLVLN----EATHEPTRVVNQAGPSSRV
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| A0A5D3BM47 Gag/pol protein | 1.7e-145 | 58.94 | Show/hide |
Query: MSSSFIALLKMERLTGEKFTTWKSNLDAILVVDNLRFVLTEECPQIPAQDAPQSVKDAFYRWAKANEKAA-YILAGTSDVLARRLQGMVSAREIMGYLQT
MSSS IALLK E LTGE + WKS L+ ILV+ +LRF+L EECP P Q+A +S++DA+ R KAN+KA YILA SD+L+++ + MV+AR+IM +
Subjt: MSSSFIALLKMERLTGEKFTTWKSNLDAILVVDNLRFVLTEECPQIPAQDAPQSVKDAFYRWAKANEKAA-YILAGTSDVLARRLQGMVSAREIMGYLQT
Query: LSRQPSEQIQHESIKYVYNARMKEGTSVREHVLDLIVHFNVAEMNGRNAELNKKEYNLTSLLNELQSFESLIKNKRHADGEVNLFAHSKRFQKGSSSGTK
L RQPS QI+ E+IKYVYNA MKEG SVREH LD+IV+FNVAEMNG A +++K +L K GE N+ AH +RF SS K
Subjt: LSRQPSEQIQHESIKYVYNARMKEGTSVREHVLDLIVHFNVAEMNGRNAELNKKEYNLTSLLNELQSFESLIKNKRHADGEVNLFAHSKRFQKGSSSGTK
Query: PCGSTRKKRKGGKGKGSATADIELKEKKGATNHVCSSFQETSSFKELEEVNAKTRGGYKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGK
+K KG KGKG AD DYSRYGYLYLM HKS+ LEKFKEYKA+V+N L +
Subjt: PCGSTRKKRKGGKGKGSATADIELKEKKGATNHVCSSFQETSSFKELEEVNAKTRGGYKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGK
Query: TIKTLQSDRGGEYMDLRFQDYMIEHGIKSQLSAPNTPQQNGVSERRNRTLLDMVRSMMSYAQLPASFWGYAVETAVQILNSVPSKSVSETPFELWKGRKP
K LQSD+GGEYMDLRFQ YMIEHGI+SQLSAP TPQ N VS+RR RTLLDMV SMMSY QLP++FWGY +ETAV ILN+V SKSVSETPF+LWK RKP
Subjt: TIKTLQSDRGGEYMDLRFQDYMIEHGIKSQLSAPNTPQQNGVSERRNRTLLDMVRSMMSYAQLPASFWGYAVETAVQILNSVPSKSVSETPFELWKGRKP
Query: SLQHFRIWGCPTHVLVTNPKKLEPRSRLCQFVGYSKETRGGLFYDPQENKVIVSTNTTFLKEDHMRNHKLRSKLVLNEATHEPTRVVNQAGP
SL HFRIWGCPTHV VTN KKLEPRSRLCQF+GY KETRGGLF+DPQEN+V VSTN TFL+EDHMR+HK +SKLVLNE T E TRVV++ GP
Subjt: SLQHFRIWGCPTHVLVTNPKKLEPRSRLCQFVGYSKETRGGLFYDPQENKVIVSTNTTFLKEDHMRNHKLRSKLVLNEATHEPTRVVNQAGP
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| E2GK51 Gag/pol protein (Fragment) | 3.7e-145 | 42.61 | Show/hide |
Query: MSSSFIALLKMERLTGEKFTTWKSNLDAILVVDNLRFVLTEECPQIPAQDAPQSVKDAFYRWAKANEKA-AYILAGTSDVLARRLQGMVSAREIMGYLQT
M++S + LL E+L G+ ++ WKSNL+ ILVVD+LRFVLTEECPQ PA +A ++V++A+ RW KAN+KA YILA +DVLA++ + +A+ IM L+
Subjt: MSSSFIALLKMERLTGEKFTTWKSNLDAILVVDNLRFVLTEECPQIPAQDAPQSVKDAFYRWAKANEKA-AYILAGTSDVLARRLQGMVSAREIMGYLQT
Query: LSRQPSEQIQHESIKYVYNARMKEGTSVREHVLDLIVHFNVAEMNG------------------------RNAELNKKEYNLTSLLNELQSFESLIKNKR
+ QPS ++HE+IK++Y RMKEGTSVREHVLD+++HFN+AE+NG NA LNK E+NLT+LLNELQ F++L +K
Subjt: LSRQPSEQIQHESIKYVYNARMKEGTSVREHVLDLIVHFNVAEMNG------------------------RNAELNKKEYNLTSLLNELQSFESLIKNKR
Query: HADGEVNLFAHSKRFQKGSSSGTKPCGSTRKKRKGGKGKGSATADIE------------------------LKEKK------------------------
+ E N+ ++F +GSSS K S + +K GKGK T+ ++ L EKK
Subjt: HADGEVNLFAHSKRFQKGSSSGTKPCGSTRKKRKGGKGKGSATADIE------------------------LKEKK------------------------
Query: ------GATNHVCSSFQETSSFKELEE-------------------------------------------------------------------------
GATNH+C SFQETSS+K+L+E
Subjt: ------GATNHVCSSFQETSSFKELEE-------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ------------VNAKTRGGYKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYMIEHGIKSQLSAPNTP
+N K RGGY+YFISFI D+SRYG++YL+HHKSE EKFKEYKAEVEN +GKTIKTL+SDRGGEYMD +FQDY+IE GI+SQLSAP+TP
Subjt: ------------VNAKTRGGYKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYMIEHGIKSQLSAPNTP
Query: QQNGVSERRNRTLLDMVRSMMSYAQLPASFWGYAVETAVQILNSVPSKSVSETPFELWKGRKPSLQHFRIWGCPTHVLVTNPKKLEPRSRLCQFVGYSKE
QQNGVSERRNRTLLDMVRSMMSYAQLP SFWGYA+ETA+ ILN+VPSKSV ETP+ELWKGRK SL++FRIWGCP HVLV NPKKLEPRS+LC FVGY KE
Subjt: QQNGVSERRNRTLLDMVRSMMSYAQLPASFWGYAVETAVQILNSVPSKSVSETPFELWKGRKPSLQHFRIWGCPTHVLVTNPKKLEPRSRLCQFVGYSKE
Query: TRGGLFYDPQENKVIVSTNTTFLKEDHMRNHKLRSKLVLNE----ATHEP---TRVVNQAGPSSR
+RGGLFY PQENKV VSTN TFL+EDH RNH+ RSK+VL E AT +P T+VV++A S +
Subjt: TRGGLFYDPQENKVIVSTNTTFLKEDHMRNHKLRSKLVLNE----ATHEP---TRVVNQAGPSSR
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 9.1e-32 | 35.51 | Show/hide |
Query: YFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYMIEHGIKSQLSAPNTPQQNGVSERRNRTLLDMVRSMMS
YF+ F+ ++ Y YL+ +KS+V F+++ A+ E + L D G EY+ + + ++ GI L+ P+TPQ NGVSER RT+ + R+M+S
Subjt: YFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYMIEHGIKSQLSAPNTPQQNGVSERRNRTLLDMVRSMMS
Query: YAQLPASFWGYAVETAVQILNSVPSKSV---SETPFELWKGRKPSLQHFRIWGCPTHVLVTNPK-KLEPRSRLCQFVGYSKETRGGLFYDPQENKVIVST
A+L SFWG AV TA ++N +PS+++ S+TP+E+W +KP L+H R++G +V + N + K + +S FVGY E G +D K IV+
Subjt: YAQLPASFWGYAVETAVQILNSVPSKSV---SETPFELWKGRKPSLQHFRIWGCPTHVLVTNPK-KLEPRSRLCQFVGYSKETRGGLFYDPQENKVIVST
Query: NTTFLKEDHMRNHK
+ + E +M N +
Subjt: NTTFLKEDHMRNHK
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 5.7e-42 | 39.91 | Show/hide |
Query: KTRGGYKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYMIEHGIKSQLSAPNTPQQNGVSERRNRTLLD
++ GG KYF++FI D SR ++Y++ K +V + F+++ A VE G+ +K L+SD GGEY F++Y HGI+ + + P TPQ NGV+ER NRT+++
Subjt: KTRGGYKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYMIEHGIKSQLSAPNTPQQNGVSERRNRTLLD
Query: MVRSMMSYAQLPASFWGYAVETAVQILNSVPSKSVS-ETPFELWKGRKPSLQHFRIWGCP--THVLVTNPKKLEPRSRLCQFVGYSKETRGGLFYDPQEN
VRSM+ A+LP SFWG AV+TA ++N PS ++ E P +W ++ S H +++GC HV KL+ +S C F+GY E G +DP +
Subjt: MVRSMMSYAQLPASFWGYAVETAVQILNSVPSKSVS-ETPFELWKGRKPSLQHFRIWGCP--THVLVTNPKKLEPRSRLCQFVGYSKETRGGLFYDPQEN
Query: KVIVSTNTTFLKEDHMRNHKLRSKLVLN
KVI S + F +E +R S+ V N
Subjt: KVIVSTNTTFLKEDHMRNHKLRSKLVLN
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| Q07163 Transposon TyH3 Gag-Pol polyprotein | 1.3e-14 | 27.27 | Show/hide |
Query: YFISFIGDYSRYGYLYLMHHKSE--VLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYMIEHGIKSQLSAPNTPQQNGVSERRNRTLLDMVRSM
YFISF + +++ ++Y +H + E +L+ F A ++N ++ +Q DRG EY + ++ ++GI + + +GV+ER NRTLLD R+
Subjt: YFISFIGDYSRYGYLYLMHHKSE--VLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYMIEHGIKSQLSAPNTPQQNGVSERRNRTLLDMVRSM
Query: MSYAQLPASFWGYAVETAVQILNSVPSKSVSETPFELWKGRKPSLQHFRI----------WGCPTHVLVTNP-KKLEPRSRLCQFVGYSKETRGGLFYDP
+ + LP W A+E + + NS+ S K +K + QH + +G P V NP K+ PR + S+ + G + Y P
Subjt: MSYAQLPASFWGYAVETAVQILNSVPSKSVSETPFELWKGRKPSLQHFRI----------WGCPTHVLVTNP-KKLEPRSRLCQFVGYSKETRGGLFYDP
Query: QENKVIVSTNTTFLKEDHMR
K + +TN L+ R
Subjt: QENKVIVSTNTTFLKEDHMR
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 3.8e-30 | 33.66 | Show/hide |
Query: YKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYMIEHGIKSQLSAPNTPQQNGVSERRNRTLLDMVRSM
Y+Y++ F+ ++RY +LY + KS+V E F +K +EN I T SD GGE++ L +Y +HGI S P+TP+ NG+SER++R +++ ++
Subjt: YKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYMIEHGIKSQLSAPNTPQQNGVSERRNRTLLDMVRSM
Query: MSYAQLPASFWGYAVETAVQILNSVPSKSVS-ETPFELWKGRKPSLQHFRIWGCPTHVLVT--NPKKLEPRSRLCQFVGYSKETRGGLFYDPQENKVIVS
+S+A +P ++W YA AV ++N +P+ + E+PF+ G P+ R++GC + + N KL+ +SR C F+GYS L Q +++ +S
Subjt: MSYAQLPASFWGYAVETAVQILNSVPSKSVS-ETPFELWKGRKPSLQHFRIWGCPTHVLVT--NPKKLEPRSRLCQFVGYSKETRGGLFYDPQENKVIVS
Query: TNTTF
+ F
Subjt: TNTTF
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 3.5e-31 | 37.02 | Show/hide |
Query: YKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYMIEHGIKSQLSAPNTPQQNGVSERRNRTLLDMVRSM
Y+Y++ F+ ++RY +LY + KS+V + F +K+ VEN I TL SD GGE++ LR DY+ +HGI S P+TP+ NG+SER++R +++M ++
Subjt: YKYFISFIGDYSRYGYLYLMHHKSEVLEKFKEYKAEVENALGKTIKTLQSDRGGEYMDLRFQDYMIEHGIKSQLSAPNTPQQNGVSERRNRTLLDMVRSM
Query: MSYAQLPASFWGYAVETAVQILNSVPSKSVS-ETPFELWKGRKPSLQHFRIWGCPTHVLVT--NPKKLEPRSRLCQFVGYS
+S+A +P ++W YA AV ++N +P+ + ++PF+ G+ P+ + +++GC + + N KLE +S+ C F+GYS
Subjt: MSYAQLPASFWGYAVETAVQILNSVPSKSVS-ETPFELWKGRKPSLQHFRIWGCPTHVLVT--NPKKLEPRSRLCQFVGYS
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