; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0002174 (gene) of Snake gourd v1 genome

Gene IDTan0002174
OrganismTrichosanthes anguina (Snake gourd v1)
Description60S ribosomal protein L18a-like protein
Genome locationLG01:107070130..107072575
RNA-Seq ExpressionTan0002174
SyntenyTan0002174
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044804 - AT1G29970-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146004.1 60S ribosomal protein L18a-like protein [Cucumis sativus]7.1e-7286.93Show/hide
Query:  MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIG
        MS++DKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPVGF  PTR PG  DS DPSQ Q YA GYQAVPGYAIVEGRPVRE RLPCCGIGIGWFLFIIG
Subjt:  MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIG

Query:  FFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW
        FFLA IPWYAGAIL++CGRVDYREKPGYVACSIAA++ TVAIIFGAT+EADVW
Subjt:  FFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW

XP_008452440.1 PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]4.4e-7489.54Show/hide
Query:  MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIG
        MSQEDKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV FPQPTRPPG SDS DPSQ Q YA GYQAVPGYAIVEGRPVRE  LPCCGIGIGWFLFIIG
Subjt:  MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIG

Query:  FFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW
        FFLA IPWYAGAIL+LCGRVDYREKPGYVACSIAA++ T+AIIFGAT+EADVW
Subjt:  FFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW

XP_022135554.1 60S ribosomal protein L18a-like protein [Momordica charantia]8.3e-7387.01Show/hide
Query:  MSQEDK-SAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFII
        MSQE+K +AA GVVVHHHHESNSGHP YGTFQGVANYPPVGFPQP RPPGASDSYDPSQSQPYA  YQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFII
Subjt:  MSQEDK-SAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFII

Query:  GFFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW
        GFF+ GIPWYAGAI++LCGRVDYREKPGYVAC+IAAIL T+A+I G TK  DVW
Subjt:  GFFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW

XP_023536200.1 60S ribosomal protein L18a-like protein [Cucurbita pepo subsp. pepo]2.0e-6683.66Show/hide
Query:  MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIG
        MSQEDKSAAVGVVVHHHHE N GHPHYGTFQGVANYPPVGFPQPTRPPG SD  D SQ Q YA GYQ V GYAIVEGRPVRE RLPCCGIG GWFLFIIG
Subjt:  MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIG

Query:  FFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW
        F L    WY GAIL+LCGRV YREKPGYVACSIAA++ TVAIIFGATK ADVW
Subjt:  FFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW

XP_038896754.1 60S ribosomal protein L18a-like protein [Benincasa hispida]6.8e-7590.85Show/hide
Query:  MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIG
        MSQEDKSAAVGVVVHHHHESNSGHP YGTFQGVANYPPVGFPQPTRPPG SDS DPSQ Q YA GYQAVPGY IVEGRPVRERRLPCCGIGIGWFLFIIG
Subjt:  MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIG

Query:  FFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW
        FFLA IPWYAGAIL+LCGRVDYREKPGYVAC IAA+L TVAIIFGAT+EAD W
Subjt:  FFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW

TrEMBL top hitse value%identityAlignment
A0A0A0L1Y0 Uncharacterized protein3.4e-7286.93Show/hide
Query:  MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIG
        MS++DKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPVGF  PTR PG  DS DPSQ Q YA GYQAVPGYAIVEGRPVRE RLPCCGIGIGWFLFIIG
Subjt:  MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIG

Query:  FFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW
        FFLA IPWYAGAIL++CGRVDYREKPGYVACSIAA++ TVAIIFGAT+EADVW
Subjt:  FFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW

A0A1S3BUZ1 60S ribosomal protein L18a-like protein2.1e-7489.54Show/hide
Query:  MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIG
        MSQEDKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV FPQPTRPPG SDS DPSQ Q YA GYQAVPGYAIVEGRPVRE  LPCCGIGIGWFLFIIG
Subjt:  MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIG

Query:  FFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW
        FFLA IPWYAGAIL+LCGRVDYREKPGYVACSIAA++ T+AIIFGAT+EADVW
Subjt:  FFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW

A0A5D3D9U1 60S ribosomal protein L18a-like protein2.1e-7489.54Show/hide
Query:  MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIG
        MSQEDKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV FPQPTRPPG SDS DPSQ Q YA GYQAVPGYAIVEGRPVRE  LPCCGIGIGWFLFIIG
Subjt:  MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIG

Query:  FFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW
        FFLA IPWYAGAIL+LCGRVDYREKPGYVACSIAA++ T+AIIFGAT+EADVW
Subjt:  FFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW

A0A6J1C1R6 60S ribosomal protein L18a-like protein4.0e-7387.01Show/hide
Query:  MSQEDK-SAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFII
        MSQE+K +AA GVVVHHHHESNSGHP YGTFQGVANYPPVGFPQP RPPGASDSYDPSQSQPYA  YQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFII
Subjt:  MSQEDK-SAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFII

Query:  GFFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW
        GFF+ GIPWYAGAI++LCGRVDYREKPGYVAC+IAAIL T+A+I G TK  DVW
Subjt:  GFFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW

A0A6J1INF5 60S ribosomal protein L18a-like protein1.3e-6683.66Show/hide
Query:  MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIG
        MSQEDKSAAVGVVVHHHHE N GHPHYGTFQGVANYPPVGFPQPTRPPG SD  D SQ Q YA GYQ V GYAIVEGRPVRE RLPCCGIG GWFLFIIG
Subjt:  MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIG

Query:  FFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW
        F L    WY GAIL+LCGRV YREKPGYVACSIAA++ TVAIIFGATK ADVW
Subjt:  FFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW

SwissProt top hitse value%identityAlignment
Q8L9S1 60S ribosomal protein L18a-like protein1.1e-3050.35Show/hide
Query:  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSQ----PYAQGYQ-AVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGA
        +YGTFQGVAN+    PP  F QP  P    PG   +Y   Q       YAQG+   VP Y +VE RP+ E  LPCCG+G+GWFLFI+GF   GIPWY GA
Subjt:  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSQ----PYAQGYQ-AVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGA

Query:  ILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW
         +VL   VD+REK GYVACSIA+++  +A++ G T + ++W
Subjt:  ILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW

Arabidopsis top hitse value%identityAlignment
AT1G17080.1 Ribosomal protein L18ae family3.0e-4456.25Show/hide
Query:  QEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPP-------VGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGY-AIVEGRPVRERRLPCCGIGIGW
        +EDKS           E  + H  YGTFQGV+NYPP        GFPQP+ PPG  DS  P     YA GYQ VP +  + EGRPVR+RRLPCCGIG+GW
Subjt:  QEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPP-------VGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGY-AIVEGRPVRERRLPCCGIGIGW

Query:  FLFIIGFFLAGIPWYAGAILVLCG-RVDYREKPGYVACSIAAILVTVAIIFGATKEADVW
        FLFI+GFFL  IPWY G  +++ G R+DYREKPGY+AC+IAAIL T+A+I G +K AD W
Subjt:  FLFIIGFFLAGIPWYAGAILVLCG-RVDYREKPGYVACSIAAILVTVAIIFGATKEADVW

AT1G29970.1 60S ribosomal protein L18A-17.6e-3250.35Show/hide
Query:  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSQ----PYAQGYQ-AVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGA
        +YGTFQGVAN+    PP  F QP  P    PG   +Y   Q       YAQG+   VP Y +VE RP+ E  LPCCG+G+GWFLFI+GF   GIPWY GA
Subjt:  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSQ----PYAQGYQ-AVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGA

Query:  ILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW
         +VL   VD+REK GYVACSIA+++  +A++ G T + ++W
Subjt:  ILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW

AT1G29970.2 60S ribosomal protein L18A-11.1e-2754.92Show/hide
Query:  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSQ----PYAQGYQ-AVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGA
        +YGTFQGVAN+    PP  F QP  P    PG   +Y   Q       YAQG+   VP Y +VE RP+ E  LPCCG+G+GWFLFI+GF   GIPWY GA
Subjt:  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSQ----PYAQGYQ-AVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGA

Query:  ILVLCGRVDYREKPGYVACSIA
         +VL   VD+REK GYVACSIA
Subjt:  ILVLCGRVDYREKPGYVACSIA

AT1G29970.3 60S ribosomal protein L18A-11.1e-2538.8Show/hide
Query:  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSQ----PYAQGYQ-AVPGYAIVEGRPVRERRLPCCGIGIGWFL----------------
        +YGTFQGVAN+    PP  F QP  P    PG   +Y   Q       YAQG+   VP Y +VE RP+ E  LPCCG+G+GWFL                
Subjt:  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSQ----PYAQGYQ-AVPGYAIVEGRPVRERRLPCCGIGIGWFL----------------

Query:  --------------------------FIIGFFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW
                                  FI+GF   GIPWY GA +VL   VD+REK GYVACSIA+++  +A++ G T + ++W
Subjt:  --------------------------FIIGFFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW

AT1G53560.1 Ribosomal protein L18ae family5.4e-3853.24Show/hide
Query:  YGTFQGVANYPP------------VGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGAIL
        YGTFQGV  YPP            +G PQP+ PPG S  +D S  Q Y Q +Q V GY + +GRP R+ RLPCCG+G+GWFLFIIGF L  IPWY G  +
Subjt:  YGTFQGVANYPP------------VGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGAIL

Query:  VLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW
        ++C R+D REKPGYVAC+IAA++ T+ I+FG      VW
Subjt:  VLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCAGGAAGACAAATCCGCCGCCGTGGGAGTCGTCGTCCACCACCATCATGAATCCAATTCCGGCCACCCTCACTACGGAACTTTCCAAGGCGTCGCTAACTATCC
TCCCGTCGGATTTCCACAGCCTACTCGCCCGCCCGGTGCCTCCGACTCTTACGATCCTTCTCAATCTCAGCCCTACGCTCAGGGCTATCAAGCTGTCCCTGGATATGCTA
TTGTTGAAGGAAGACCAGTGAGAGAGCGGCGCCTTCCTTGCTGTGGTATTGGCATTGGGTGGTTCCTGTTCATTATTGGTTTCTTCCTTGCTGGTATCCCATGGTATGCT
GGGGCAATTCTTGTACTATGTGGCAGGGTAGATTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCTATTCTTGTCACCGTTGCGATTATTTTCGGTGCAAC
AAAGGAAGCTGATGTCTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATACAATACAACCCACTCGATCATTCTAAATTCTGATCCATTTCGGTCTTCGGGTCTCTGTTTCTGCAAAGAGAGAGAAAATGAGCCAGGAAGACAAATCCGCCGCCGTG
GGAGTCGTCGTCCACCACCATCATGAATCCAATTCCGGCCACCCTCACTACGGAACTTTCCAAGGCGTCGCTAACTATCCTCCCGTCGGATTTCCACAGCCTACTCGCCC
GCCCGGTGCCTCCGACTCTTACGATCCTTCTCAATCTCAGCCCTACGCTCAGGGCTATCAAGCTGTCCCTGGATATGCTATTGTTGAAGGAAGACCAGTGAGAGAGCGGC
GCCTTCCTTGCTGTGGTATTGGCATTGGGTGGTTCCTGTTCATTATTGGTTTCTTCCTTGCTGGTATCCCATGGTATGCTGGGGCAATTCTTGTACTATGTGGCAGGGTA
GATTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCTATTCTTGTCACCGTTGCGATTATTTTCGGTGCAACAAAGGAAGCTGATGTCTGGTAACCAATCCT
AAACTAAAAATATTGTATAGTTTGCAAATATATATGAACAACACAATCCACGATTTCCGAGCACTACATCTTCAAGCTAGTTCCATTGAAACCTGTATTTGTGAGAGCAT
AGATATTGCTTAGCGGTTGTTTCCCATGTTGTGCCTAAGAAGTGTAGCATTCTGCAAAAGCATGTTATTTATTTTTTCTTATGTGTCCATATATTTGTTATGACTATATA
TCCGAAACTCGGCTGTCTGAATGTACTTATCCTTTGGTAAATATATTGGTTCTTTGTTGTTTGGAATAA
Protein sequenceShow/hide protein sequence
MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYA
GAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW