; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0002207 (gene) of Snake gourd v1 genome

Gene IDTan0002207
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG04:14961924..14966742
RNA-Seq ExpressionTan0002207
SyntenyTan0002207
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154440.1 uncharacterized protein LOC111021711 [Momordica charantia]5.8e-0728.66Show/hide
Query:  KQVQIPATPTP-------PPACNEQDGKTGVGVAICVND-GSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPT
        K V   A P+P         AC   + +TG+GV +C ND G  +VAM  K D +      E +A+ +GL L   LD   V   SDS + + +++   +P+
Subjt:  KQVQIPATPTP-------PPACNEQDGKTGVGVAICVND-GSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPT

Query:  TDIKNYIEDIHLLWQHFRVNHLSHTSRSFNSLAHVLARKGL-GGCTELWNDNFLDWI
             +++DIH+   +F      H  RS +++ H LA   +     ++W   F +W+
Subjt:  TDIKNYIEDIHLLWQHFRVNHLSHTSRSFNSLAHVLARKGL-GGCTELWNDNFLDWI

XP_023906281.1 uncharacterized protein LOC112018008 [Quercus suber]3.8e-0632.09Show/hide
Query:  PATPTPPP---------ACNEQDGKTGVGVAICVNDGSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPTTDIK
        P  P+PPP         A +E D  + VGV I  N G  + A+   +  Y ++   E  AL  G+ LA  L   ++ F  DSL ++  +N  +   T+  
Subjt:  PATPTPPP---------ACNEQDGKTGVGVAICVNDGSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPTTDIK

Query:  NYIEDIHLLWQHFRVNHLSHTSRSFNSLAHVLAR
        + I+ I  +   F   H  H SRSFN++AH LA+
Subjt:  NYIEDIHLLWQHFRVNHLSHTSRSFNSLAHVLAR

XP_023920968.1 uncharacterized protein LOC112032440 [Quercus suber]2.2e-0631.86Show/hide
Query:  KTGVGVAICVNDGSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVNHLSHTSRS
        + GVGV +   +G+ + A+A K +C L +   E  AL  G+     +    V F  DSL ++  V G+ E    ++N I  +    Q FR     HT R 
Subjt:  KTGVGVAICVNDGSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVNHLSHTSRS

Query:  FNSLAHVLARKGL
         N+ AH+LA+  L
Subjt:  FNSLAHVLARKGL

XP_030969974.1 uncharacterized protein LOC115990267 [Quercus lobata]1.8e-0833.33Show/hide
Query:  EQDGKTGVGVAICVNDGSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVNHLSH
        ++  K G+GV +  + G  L A+  K D   ++   E +A+   ++ A    F+ V   SDSLS+V  +    EPT  I N IED+ LL +  +     H
Subjt:  EQDGKTGVGVAICVNDGSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVNHLSH

Query:  TSRSFNSLAHVLARKGL
        T R  N +AH LAR  +
Subjt:  TSRSFNSLAHVLARKGL

XP_042965938.1 uncharacterized protein LOC122299618 [Carya illinoinensis]4.9e-0630.94Show/hide
Query:  ACNEQDGKTGVGVAICVNDGSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVNH
        A ++++GK G+GV I   +G  LVA   + +   ++   E  AL   L++   L+F+ V F  D+ ++V  VN   E  +   + IED+  L +  +   
Subjt:  ACNEQDGKTGVGVAICVNDGSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVNH

Query:  LSHTSRSFNSLAHVLARKGLGGCTEL-WNDNFLDWIRNL
        +S   R  N  AHVLAR  L   +E+ W ++  D IR +
Subjt:  LSHTSRSFNSLAHVLARKGLGGCTEL-WNDNFLDWIRNL

TrEMBL top hitse value%identityAlignment
A0A1J6L6J0 RNase H domain-containing protein7.7e-0529.09Show/hide
Query:  KTGVGVAICVNDGSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVNHLSHTSRS
        K  +G+     +G  L A  +       +   E  A+   ++LA +  +  +H  SDSL++V M+NG + P+ ++    EDI  L QH       + SR 
Subjt:  KTGVGVAICVNDGSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVNHLSHTSRS

Query:  FNSLAHVLAR
        FN+ +H LA+
Subjt:  FNSLAHVLAR

A0A5C7IST2 RNase H domain-containing protein5.9e-0531.58Show/hide
Query:  KTGVGVAICVNDGSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVNHLSHTSRS
        K  VG+ I  + G  L + A  ++   ++   E   +Y+GL LA+      +   SDSL++V + NG      D+ N I DI  L    R   +S+  RS
Subjt:  KTGVGVAICVNDGSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVNHLSHTSRS

Query:  FNSLAHVLARKGLG
         N +AH +AR+ +G
Subjt:  FNSLAHVLARKGLG

A0A6J1CNR4 uncharacterized protein LOC1110129507.0e-0631.15Show/hide
Query:  ACNEQDGKTGVGVAICVND-GSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVN
        AC +   +T +G+ +C N+ G  L A + + + Y +    E +AL +GL+LA  L+  QV F SDSL L+ ++            ++EDI +L ++F   
Subjt:  ACNEQDGKTGVGVAICVND-GSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVN

Query:  HLSHTSRSFNSLAHVLARKGLG
        +  H  RS N  A  +A   +G
Subjt:  HLSHTSRSFNSLAHVLARKGLG

A0A6J1DJL6 uncharacterized protein LOC1110217112.8e-0728.66Show/hide
Query:  KQVQIPATPTP-------PPACNEQDGKTGVGVAICVND-GSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPT
        K V   A P+P         AC   + +TG+GV +C ND G  +VAM  K D +      E +A+ +GL L   LD   V   SDS + + +++   +P+
Subjt:  KQVQIPATPTP-------PPACNEQDGKTGVGVAICVND-GSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPT

Query:  TDIKNYIEDIHLLWQHFRVNHLSHTSRSFNSLAHVLARKGL-GGCTELWNDNFLDWI
             +++DIH+   +F      H  RS +++ H LA   +     ++W   F +W+
Subjt:  TDIKNYIEDIHLLWQHFRVNHLSHTSRSFNSLAHVLARKGL-GGCTELWNDNFLDWI

A0A7N2KSS6 Uncharacterized protein1.5e-0533.64Show/hide
Query:  KTGVGVAICVNDGSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVNHLSHTSRS
        + G+GV I  + G  + A++ K    L +   E  AL +G++ A  +    V F SDSL++   V G+ EP + ++N I  I    Q FR    +HT R 
Subjt:  KTGVGVAICVNDGSCLVAMANKYDCYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVNHLSHTSRS

Query:  FNSLAHVLAR
         N  AH+LA+
Subjt:  FNSLAHVLAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACTTCACCGGCAGATTCTTCGAGAACAGGGAATGGAATTCAATCGGAACCGGCAGCGGTGAAGAGATCTGTGATTTCGCAGATGCTTTCTCCGATCACCATCAA
TTCATCCATGGACGTTTCACCATCAATGCAAATCAGCGAAAAATCAGGGGAGAAAGAGGAGCTCGTTACGAAACGTACGAACATTAAATATGCTAAGAAGCTCAATTTTG
AGGGAGCTGAAATGATTGATAGAGGGTTCTCGAAAAAGCTGGAAGATAAGGGTTACATGGTTGGCAATGGGTTAGACCTTGATGGGCTCTTAATTTGCAATGTTGCGGTT
AATGGAAAGGAGTTGGGTCAGTCTCTTCCAGATTCACAAAATGTGAAGGCCCAATCTAAAACTAAAGGGGTCGAGGAAAGAAATCAAACGGGGTTGGTCCATGCGGTTAT
TGGGCTGGCCGAAAATAAACTTGAAGGGGGCCCAGAACCTGCTTCATATGCAGGCAAGGAAGATGATTTGAAGCCCACTTCTTTCTGCAAACAAGTCCAAATACCGGCAA
CTCCTACACCTCCGCCAGCTTGTAATGAACAGGATGGAAAGACAGGCGTGGGAGTGGCTATTTGTGTTAATGATGGGAGTTGTTTGGTGGCCATGGCCAACAAATATGAT
TGTTACTTAAATTCGACATGCTTCGAAGAAGTGGCTTTGTATGATGGGTTGAAATTGGCTTCCCGTCTGGATTTCTCTCAAGTTCACTTCTTTTCAGATTCGTTGTCCTT
AGTAGCAATGGTGAATGGAGTCCAGGAGCCTACTACGGATATCAAAAATTATATCGAAGATATTCATTTGCTTTGGCAACATTTTAGGGTGAATCATTTGAGCCATACTA
GTAGATCTTTTAATTCTTTAGCACATGTATTAGCAAGGAAGGGTTTGGGGGGTTGTACAGAGCTTTGGAATGACAATTTTCTTGATTGGATCCGAAATCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCACTTCACCGGCAGATTCTTCGAGAACAGGGAATGGAATTCAATCGGAACCGGCAGCGGTGAAGAGATCTGTGATTTCGCAGATGCTTTCTCCGATCACCATCAA
TTCATCCATGGACGTTTCACCATCAATGCAAATCAGCGAAAAATCAGGGGAGAAAGAGGAGCTCGTTACGAAACGTACGAACATTAAATATGCTAAGAAGCTCAATTTTG
AGGGAGCTGAAATGATTGATAGAGGGTTCTCGAAAAAGCTGGAAGATAAGGGTTACATGGTTGGCAATGGGTTAGACCTTGATGGGCTCTTAATTTGCAATGTTGCGGTT
AATGGAAAGGAGTTGGGTCAGTCTCTTCCAGATTCACAAAATGTGAAGGCCCAATCTAAAACTAAAGGGGTCGAGGAAAGAAATCAAACGGGGTTGGTCCATGCGGTTAT
TGGGCTGGCCGAAAATAAACTTGAAGGGGGCCCAGAACCTGCTTCATATGCAGGCAAGGAAGATGATTTGAAGCCCACTTCTTTCTGCAAACAAGTCCAAATACCGGCAA
CTCCTACACCTCCGCCAGCTTGTAATGAACAGGATGGAAAGACAGGCGTGGGAGTGGCTATTTGTGTTAATGATGGGAGTTGTTTGGTGGCCATGGCCAACAAATATGAT
TGTTACTTAAATTCGACATGCTTCGAAGAAGTGGCTTTGTATGATGGGTTGAAATTGGCTTCCCGTCTGGATTTCTCTCAAGTTCACTTCTTTTCAGATTCGTTGTCCTT
AGTAGCAATGGTGAATGGAGTCCAGGAGCCTACTACGGATATCAAAAATTATATCGAAGATATTCATTTGCTTTGGCAACATTTTAGGGTGAATCATTTGAGCCATACTA
GTAGATCTTTTAATTCTTTAGCACATGTATTAGCAAGGAAGGGTTTGGGGGGTTGTACAGAGCTTTGGAATGACAATTTTCTTGATTGGATCCGAAATCTTTAA
Protein sequenceShow/hide protein sequence
MATSPADSSRTGNGIQSEPAAVKRSVISQMLSPITINSSMDVSPSMQISEKSGEKEELVTKRTNIKYAKKLNFEGAEMIDRGFSKKLEDKGYMVGNGLDLDGLLICNVAV
NGKELGQSLPDSQNVKAQSKTKGVEERNQTGLVHAVIGLAENKLEGGPEPASYAGKEDDLKPTSFCKQVQIPATPTPPPACNEQDGKTGVGVAICVNDGSCLVAMANKYD
CYLNSTCFEEVALYDGLKLASRLDFSQVHFFSDSLSLVAMVNGVQEPTTDIKNYIEDIHLLWQHFRVNHLSHTSRSFNSLAHVLARKGLGGCTELWNDNFLDWIRNL