; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0002289 (gene) of Snake gourd v1 genome

Gene IDTan0002289
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionVQ domain-containing protein
Genome locationLG08:64886847..64887273
RNA-Seq ExpressionTan0002289
SyntenyTan0002289
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR008889 - VQ
IPR039607 - VQ motif-containing protein 8/17/18/20/21/25


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043778.1 protein MKS1-like [Cucumis melo var. makuwa]1.0e-3182.8Show/hide
Query:  MMNSIAARNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCPSS
        MMN  AARNQSQLRGPRPPPLTVNKSST IFKKST       PN+R+RRSP+I+YLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSC +S
Subjt:  MMNSIAARNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCPSS

KAG6596645.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]4.0e-2885.56Show/hide
Query:  MNSIAARNQ--SQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASS
        MNS AARNQ   +LRGPRPPPLTVNKSSTKIFKKSTT  L PIPNRRD   PVIVYLRSPKIIHVRPEEFKSFVQRLTGN SSVAVVA+S
Subjt:  MNSIAARNQ--SQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASS

KGN59247.1 hypothetical protein Csa_002000 [Cucumis sativus]7.2e-3078.72Show/hide
Query:  MMNSIAARNQSQLRGPRPPPLTVNK-SSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCPSS
        M+ S AARN SQLRGPRPPPLTVNK SST I KKST    LPI N+R RRSP+I+YLRSPK+IHVRPEEFKSFVQRLTGNRSSVAVVASSC ++
Subjt:  MMNSIAARNQSQLRGPRPPPLTVNK-SSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCPSS

XP_008443599.1 PREDICTED: protein MKS1-like [Cucumis melo]2.9e-3182.61Show/hide
Query:  MNSIAARNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCPSS
        MN  AARNQSQLRGPRPPPLTVNKSST IFKKST       PN+R+RRSP+I+YLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSC +S
Subjt:  MNSIAARNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCPSS

XP_041027964.1 protein MKS1-like [Juglans microcarpa x Juglans regia]5.6e-1456.38Show/hide
Query:  MNSIA------ARNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASS
        MNSIA       + + QL GPRP PLTV+KSS KI K        PIP+R+  RSPVI+YL+SPK+IHVRPEEF   VQRLTGN++     ASS
Subjt:  MNSIA------ARNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASS

TrEMBL top hitse value%identityAlignment
A0A0A0LEW5 VQ domain-containing protein3.5e-3078.72Show/hide
Query:  MMNSIAARNQSQLRGPRPPPLTVNK-SSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCPSS
        M+ S AARN SQLRGPRPPPLTVNK SST I KKST    LPI N+R RRSP+I+YLRSPK+IHVRPEEFKSFVQRLTGNRSSVAVVASSC ++
Subjt:  MMNSIAARNQSQLRGPRPPPLTVNK-SSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCPSS

A0A1R3JJT0 VQ motif-containing protein3.5e-1453.68Show/hide
Query:  AARNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIP--NRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVAS-----SCPSS
        ++R   +L+GPRP PL V+ +S+KI KKS+T + L  P  NR     PV++YLRSPKIIHVRPEEF S VQRLTG  S+ A  +S     S PSS
Subjt:  AARNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIP--NRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVAS-----SCPSS

A0A1S3B975 protein MKS1-like1.4e-3182.61Show/hide
Query:  MNSIAARNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCPSS
        MN  AARNQSQLRGPRPPPLTVNKSST IFKKST       PN+R+RRSP+I+YLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSC +S
Subjt:  MNSIAARNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCPSS

A0A2N9GB07 VQ domain-containing protein1.4e-1557.95Show/hide
Query:  MNSIAARNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASS
        M+S   +   QL+GPRP PLTVNKSSTKI K+       P+PN R R SPVI+YL+SPK+IHVRPEEF   VQ+LTGN++   V A S
Subjt:  MNSIAARNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASS

A0A5D3DP92 Protein MKS1-like4.9e-3282.8Show/hide
Query:  MMNSIAARNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCPSS
        MMN  AARNQSQLRGPRPPPLTVNKSST IFKKST       PN+R+RRSP+I+YLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSC +S
Subjt:  MMNSIAARNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCPSS

SwissProt top hitse value%identityAlignment
F4HWF9 Nuclear speckle RNA-binding protein B3.4e-0634.95Show/hide
Query:  MNSIAARNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIP-----------NRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSC
        M++ + R++  + GP+P PL V   S KI KK   A   P P             R    PV +Y  +P+IIH  P  F + VQRLTG  S+    +SS 
Subjt:  MNSIAARNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIP-----------NRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSC

Query:  PSS
         S+
Subjt:  PSS

Q8LGD5 Protein MKS14.7e-0844.44Show/hide
Query:  RNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRD-----RRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSV
        + Q Q+ GPRP PL+V+K S KI  K       P PNR        R PV++Y  SPK++H    EF + VQRLTG  S V
Subjt:  RNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRD-----RRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSV

Q9CA36 VQ motif-containing protein 8, chloroplastic2.6e-0639.08Show/hide
Query:  SQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCPSSLLLE
        +++ G RP  L +   S  I KK+++    P P+   R SPVI+Y  SPK+IH R E+F + VQRLTG    +    S   SS++ E
Subjt:  SQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCPSSLLLE

Q9LS54 VQ motif-containing protein 203.7e-0541.27Show/hide
Query:  PRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTG
        P PP L VNK S  I K  + ++     +    R PVI+Y  +P+IIH  P++F + VQ+LTG
Subjt:  PRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTG

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding2.4e-0734.95Show/hide
Query:  MNSIAARNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIP-----------NRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSC
        M++ + R++  + GP+P PL V   S KI KK   A   P P             R    PV +Y  +P+IIH  P  F + VQRLTG  S+    +SS 
Subjt:  MNSIAARNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIP-----------NRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSC

Query:  PSS
         S+
Subjt:  PSS

AT1G21326.1 VQ motif-containing protein2.8e-0842.22Show/hide
Query:  GPRPPPLTVNKSSTKIFKKSTTATLLPIP-----------NRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCPSS
        GPRP PL V   S KI KK   A   P P             R    PVI+Y  SP+IIH  P  F + VQRLTG ++S +  +SS  SS
Subjt:  GPRPPPLTVNKSSTKIFKKSTTATLLPIP-----------NRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCPSS

AT1G68450.1 VQ motif-containing protein1.8e-0739.08Show/hide
Query:  SQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCPSSLLLE
        +++ G RP  L +   S  I KK+++    P P+   R SPVI+Y  SPK+IH R E+F + VQRLTG    +    S   SS++ E
Subjt:  SQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCPSSLLLE

AT3G18360.1 VQ motif-containing protein2.7e-0641.27Show/hide
Query:  PRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTG
        P PP L VNK S  I K  + ++     +    R PVI+Y  +P+IIH  P++F + VQ+LTG
Subjt:  PRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTG

AT3G18690.1 MAP kinase substrate 13.4e-0944.44Show/hide
Query:  RNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRD-----RRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSV
        + Q Q+ GPRP PL+V+K S KI  K       P PNR        R PV++Y  SPK++H    EF + VQRLTG  S V
Subjt:  RNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRD-----RRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAACTCCATCGCCGCGAGGAATCAATCGCAATTGCGAGGTCCAAGGCCGCCGCCATTGACGGTGAACAAATCCTCCACCAAGATTTTCAAGAAATCGACGACGGC
GACTCTGCTTCCGATTCCTAACCGACGCGATCGCCGTTCTCCGGTAATCGTTTACCTCCGATCGCCGAAGATTATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTC
AACGCCTCACTGGAAACCGATCTTCCGTCGCCGTCGTTGCGTCGTCGTGTCCTTCGTCTCTGCTGCTGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGAACTCCATCGCCGCGAGGAATCAATCGCAATTGCGAGGTCCAAGGCCGCCGCCATTGACGGTGAACAAATCCTCCACCAAGATTTTCAAGAAATCGACGACGGC
GACTCTGCTTCCGATTCCTAACCGACGCGATCGCCGTTCTCCGGTAATCGTTTACCTCCGATCGCCGAAGATTATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTC
AACGCCTCACTGGAAACCGATCTTCCGTCGCCGTCGTTGCGTCGTCGTGTCCTTCGTCTCTGCTGCTGGAATGATTATCGATCATCTTCCCGGTGAGGAATTTGTATCCG
CCTGCAATTGCATTCCGTCGTTCTCCGGCGGATCCGTCGTTGATTGGTTTCTTGTGGTTCACTATCACTGGTTTTGTATATGATAATTAATAATTAA
Protein sequenceShow/hide protein sequence
MMNSIAARNQSQLRGPRPPPLTVNKSSTKIFKKSTTATLLPIPNRRDRRSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCPSSLLLE