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Tan0002303 (gene) of Snake gourd v1 genome

Gene IDTan0002303
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG06:56488846..56489223
RNA-Seq ExpressionTan0002303
SyntenyTan0002303
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.2e-2253.39Show/hide
Query:  MTVTEDEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASLEWAEFSKLVETALRVERSLVDDRMGKGVVSCGHTTYSVGLPRDRFQRGDNRRF
        MTV E EKK+TELSKYA+ ++ +E +RCKRFE+GLR EIRTPVTA  +W +FSKLVE ALRVE+SL ++R  +   S    T+S  + R+R  +  + RF
Subjt:  MTVTEDEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASLEWAEFSKLVETALRVERSLVDDRMGKGVVSCGHTTYSVGLPRDRFQRGDNRRF

Query:  TPGVSGKGSFKPHRGGQS
         P VS +GSFK    G S
Subjt:  TPGVSGKGSFKPHRGGQS

KAA0042193.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.7e-2151.69Show/hide
Query:  MTVTEDEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASLEWAEFSKLVETALRVERSLVDDRMGKGVVSCGHTTYSVGLPRDRFQRGDNRRF
        MTV E EK +TELSKYA++++ +E  RCKRF++GLR EIRTPV AS  W +F KLVE ALRVE+SL ++R  +   S    T+S  + R+R  +G +  F
Subjt:  MTVTEDEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASLEWAEFSKLVETALRVERSLVDDRMGKGVVSCGHTTYSVGLPRDRFQRGDNRRF

Query:  TPGVSGKGSFKPHRGGQS
         PGVS KG+FK    G S
Subjt:  TPGVSGKGSFKPHRGGQS

KAA0060484.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]4.9e-2349.6Show/hide
Query:  MTVTEDEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASLEWAEFSKLVETALRVERSLVDDRMGKGVVSCGHTTYSVGLPRDRFQRGDNRRF
        MT+ E EKK+TELS YA+ ++ +E++RCKRFE+GLR EIRTPVTA  +W +FSKLVE ALRVE+SL ++R  +   S    T+S  + R+R  +  + RF
Subjt:  MTVTEDEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASLEWAEFSKLVETALRVERSLVDDRMGKGVVSCGHTTYSVGLPRDRFQRGDNRRF

Query:  TPGVSGKGSFKPHRGGQSTPRTDTS
         PGVS +G+FK    G S  ++ +S
Subjt:  TPGVSGKGSFKPHRGGQSTPRTDTS

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]3.2e-2253.39Show/hide
Query:  MTVTEDEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASLEWAEFSKLVETALRVERSLVDDRMGKGVVSCGHTTYSVGLPRDRFQRGDNRRF
        MTV E EKK+TELSKYA+ ++ +E +RCKRFE+GLR EIRTPVTA  +W +FSKLVE ALRVE+SL ++R  +   S    T+S  + R+R  +  + RF
Subjt:  MTVTEDEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASLEWAEFSKLVETALRVERSLVDDRMGKGVVSCGHTTYSVGLPRDRFQRGDNRRF

Query:  TPGVSGKGSFKPHRGGQS
         P VS +GSFK    G S
Subjt:  TPGVSGKGSFKPHRGGQS

TYK26763.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.7e-2151.69Show/hide
Query:  MTVTEDEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASLEWAEFSKLVETALRVERSLVDDRMGKGVVSCGHTTYSVGLPRDRFQRGDNRRF
        MTV E EK +TELSKYA++++ +E  RCKRF++GLR EIRTPV AS  W +F KLVE ALRVE+SL ++R  +   S    T+S  + R+R  +G +  F
Subjt:  MTVTEDEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASLEWAEFSKLVETALRVERSLVDDRMGKGVVSCGHTTYSVGLPRDRFQRGDNRRF

Query:  TPGVSGKGSFKPHRGGQS
         PGVS KG+FK    G S
Subjt:  TPGVSGKGSFKPHRGGQS

TrEMBL top hitse value%identityAlignment
A0A5A7T1M0 Reverse transcriptase1.6e-2253.39Show/hide
Query:  MTVTEDEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASLEWAEFSKLVETALRVERSLVDDRMGKGVVSCGHTTYSVGLPRDRFQRGDNRRF
        MTV E EKK+TELSKYA+ ++ +E +RCKRFE+GLR EIRTPVTA  +W +FSKLVE ALRVE+SL ++R  +   S    T+S  + R+R  +  + RF
Subjt:  MTVTEDEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASLEWAEFSKLVETALRVERSLVDDRMGKGVVSCGHTTYSVGLPRDRFQRGDNRRF

Query:  TPGVSGKGSFKPHRGGQS
         P VS +GSFK    G S
Subjt:  TPGVSGKGSFKPHRGGQS

A0A5A7TG44 DNA/RNA polymerases superfamily protein1.3e-2151.69Show/hide
Query:  MTVTEDEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASLEWAEFSKLVETALRVERSLVDDRMGKGVVSCGHTTYSVGLPRDRFQRGDNRRF
        MTV E EK +TELSKYA++++ +E  RCKRF++GLR EIRTPV AS  W +F KLVE ALRVE+SL ++R  +   S    T+S  + R+R  +G +  F
Subjt:  MTVTEDEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASLEWAEFSKLVETALRVERSLVDDRMGKGVVSCGHTTYSVGLPRDRFQRGDNRRF

Query:  TPGVSGKGSFKPHRGGQS
         PGVS KG+FK    G S
Subjt:  TPGVSGKGSFKPHRGGQS

A0A5A7UZM6 Gag protease polyprotein-like protein2.4e-2349.6Show/hide
Query:  MTVTEDEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASLEWAEFSKLVETALRVERSLVDDRMGKGVVSCGHTTYSVGLPRDRFQRGDNRRF
        MT+ E EKK+TELS YA+ ++ +E++RCKRFE+GLR EIRTPVTA  +W +FSKLVE ALRVE+SL ++R  +   S    T+S  + R+R  +  + RF
Subjt:  MTVTEDEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASLEWAEFSKLVETALRVERSLVDDRMGKGVVSCGHTTYSVGLPRDRFQRGDNRRF

Query:  TPGVSGKGSFKPHRGGQSTPRTDTS
         PGVS +G+FK    G S  ++ +S
Subjt:  TPGVSGKGSFKPHRGGQSTPRTDTS

A0A5D3BB91 Reverse transcriptase1.6e-2253.39Show/hide
Query:  MTVTEDEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASLEWAEFSKLVETALRVERSLVDDRMGKGVVSCGHTTYSVGLPRDRFQRGDNRRF
        MTV E EKK+TELSKYA+ ++ +E +RCKRFE+GLR EIRTPVTA  +W +FSKLVE ALRVE+SL ++R  +   S    T+S  + R+R  +  + RF
Subjt:  MTVTEDEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASLEWAEFSKLVETALRVERSLVDDRMGKGVVSCGHTTYSVGLPRDRFQRGDNRRF

Query:  TPGVSGKGSFKPHRGGQS
         P VS +GSFK    G S
Subjt:  TPGVSGKGSFKPHRGGQS

A0A5D3DT34 DNA/RNA polymerases superfamily protein1.3e-2151.69Show/hide
Query:  MTVTEDEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASLEWAEFSKLVETALRVERSLVDDRMGKGVVSCGHTTYSVGLPRDRFQRGDNRRF
        MTV E EK +TELSKYA++++ +E  RCKRF++GLR EIRTPV AS  W +F KLVE ALRVE+SL ++R  +   S    T+S  + R+R  +G +  F
Subjt:  MTVTEDEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASLEWAEFSKLVETALRVERSLVDDRMGKGVVSCGHTTYSVGLPRDRFQRGDNRRF

Query:  TPGVSGKGSFKPHRGGQS
         PGVS KG+FK    G S
Subjt:  TPGVSGKGSFKPHRGGQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGTAACAGAAGATGAGAAGAAGTTCACAGAGTTATCAAAGTATGCTAGCACTATTGTTGCAAACGAGATAGATCGATGCAAGAGGTTCGAGGATGGTCTGCGAAC
AGAGATCCGAACGCCTGTGACAGCAAGTTTGGAGTGGGCTGAGTTCTCCAAGCTTGTGGAGACGGCATTACGGGTAGAGCGAAGCCTAGTAGATGACAGAATGGGAAAAG
GAGTTGTAAGTTGTGGTCATACCACTTATTCTGTTGGTTTACCACGGGACCGATTCCAACGAGGGGATAATAGAAGATTCACTCCAGGTGTTTCTGGAAAAGGGAGTTTT
AAACCCCATCGTGGTGGGCAGTCTACTCCAAGGACTGATACAAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAGTAACAGAAGATGAGAAGAAGTTCACAGAGTTATCAAAGTATGCTAGCACTATTGTTGCAAACGAGATAGATCGATGCAAGAGGTTCGAGGATGGTCTGCGAAC
AGAGATCCGAACGCCTGTGACAGCAAGTTTGGAGTGGGCTGAGTTCTCCAAGCTTGTGGAGACGGCATTACGGGTAGAGCGAAGCCTAGTAGATGACAGAATGGGAAAAG
GAGTTGTAAGTTGTGGTCATACCACTTATTCTGTTGGTTTACCACGGGACCGATTCCAACGAGGGGATAATAGAAGATTCACTCCAGGTGTTTCTGGAAAAGGGAGTTTT
AAACCCCATCGTGGTGGGCAGTCTACTCCAAGGACTGATACAAGTTGA
Protein sequenceShow/hide protein sequence
MTVTEDEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASLEWAEFSKLVETALRVERSLVDDRMGKGVVSCGHTTYSVGLPRDRFQRGDNRRFTPGVSGKGSF
KPHRGGQSTPRTDTS