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Tan0002350 (gene) of Snake gourd v1 genome

Gene IDTan0002350
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG07:20056572..20056763
RNA-Seq ExpressionTan0002350
SyntenyTan0002350
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034961.1 gag/pol protein [Cucumis melo var. makuwa]5.9e-1769.84Show/hide
Query:  MSSSIITLLASDKLVGDNFQTWKNNINTILVTDNLKFVLTEECPQLPTSTASRSVRDAYDRWI
        M+SSI+ LLAS+KL GDN+  WK+N+NTILV D+L+FVLTEECPQ PTS A+R+ R AYDRWI
Subjt:  MSSSIITLLASDKLVGDNFQTWKNNINTILVTDNLKFVLTEECPQLPTSTASRSVRDAYDRWI
KAA0035676.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-1769.84Show/hide
Query:  MSSSIITLLASDKLVGDNFQTWKNNINTILVTDNLKFVLTEECPQLPTSTASRSVRDAYDRWI
        M+SSI+ LLAS KL GDN+ TWK+N+NTILV D+L+F+LTEECPQ PTS A+R+ R+AYDRWI
Subjt:  MSSSIITLLASDKLVGDNFQTWKNNINTILVTDNLKFVLTEECPQLPTSTASRSVRDAYDRWI
KAA0046201.1 gag/pol protein [Cucumis melo var. makuwa]5.9e-1768.25Show/hide
Query:  MSSSIITLLASDKLVGDNFQTWKNNINTILVTDNLKFVLTEECPQLPTSTASRSVRDAYDRWI
        M++SI+ LLAS KL GDN+ TWK N+NTILV ++L+FVLTEECPQ P STA+R+VR+AYDRW+
Subjt:  MSSSIITLLASDKLVGDNFQTWKNNINTILVTDNLKFVLTEECPQLPTSTASRSVRDAYDRWI
KAA0064149.1 gag/pol protein [Cucumis melo var. makuwa]5.9e-1769.84Show/hide
Query:  MSSSIITLLASDKLVGDNFQTWKNNINTILVTDNLKFVLTEECPQLPTSTASRSVRDAYDRWI
        M+SSI+ LLAS+KL GDN+ TWK+N+NTILV DNL+FVLTEECPQ P S  +R+ R AYDRWI
Subjt:  MSSSIITLLASDKLVGDNFQTWKNNINTILVTDNLKFVLTEECPQLPTSTASRSVRDAYDRWI
XP_038882358.1 uncharacterized protein LOC120073622 [Benincasa hispida]1.2e-1769.84Show/hide
Query:  MSSSIITLLASDKLVGDNFQTWKNNINTILVTDNLKFVLTEECPQLPTSTASRSVRDAYDRWI
        M+SSII LL S+KL GDN+  WK+N+NTILV D+L+FVLTEECPQ PTS A+R+VR+AYDRW+
Subjt:  MSSSIITLLASDKLVGDNFQTWKNNINTILVTDNLKFVLTEECPQLPTSTASRSVRDAYDRWI
TrEMBL top hitse value%identityAlignment
A0A5A7T0E9 Gag/pol protein9.9e-1869.84Show/hide
Query:  MSSSIITLLASDKLVGDNFQTWKNNINTILVTDNLKFVLTEECPQLPTSTASRSVRDAYDRWI
        M+SSI+ LLAS KL GDN+ TWK+N+NTILV D+L+F+LTEECPQ PTS A+R+ R+AYDRWI
Subjt:  MSSSIITLLASDKLVGDNFQTWKNNINTILVTDNLKFVLTEECPQLPTSTASRSVRDAYDRWI
A0A5A7TXW7 Gag/pol protein2.9e-1768.25Show/hide
Query:  MSSSIITLLASDKLVGDNFQTWKNNINTILVTDNLKFVLTEECPQLPTSTASRSVRDAYDRWI
        M++SI+ LLAS KL GDN+ TWK N+NTILV ++L+FVLTEECPQ P STA+R+VR+AYDRW+
Subjt:  MSSSIITLLASDKLVGDNFQTWKNNINTILVTDNLKFVLTEECPQLPTSTASRSVRDAYDRWI
A0A5A7VF40 Gag/pol protein2.9e-1769.84Show/hide
Query:  MSSSIITLLASDKLVGDNFQTWKNNINTILVTDNLKFVLTEECPQLPTSTASRSVRDAYDRWI
        M+SSI+ LLAS+KL GDN+ TWK+N+NTILV DNL+FVLTEECPQ P S  +R+ R AYDRWI
Subjt:  MSSSIITLLASDKLVGDNFQTWKNNINTILVTDNLKFVLTEECPQLPTSTASRSVRDAYDRWI
A0A5D3CWV9 Gag/pol protein2.9e-1769.84Show/hide
Query:  MSSSIITLLASDKLVGDNFQTWKNNINTILVTDNLKFVLTEECPQLPTSTASRSVRDAYDRWI
        M+SSI+ LLAS+KL GDN+ TWK+N+NTILV DNL+FVLTEECPQ P S  +R+ R AYDRWI
Subjt:  MSSSIITLLASDKLVGDNFQTWKNNINTILVTDNLKFVLTEECPQLPTSTASRSVRDAYDRWI
A0A5D3DCL7 Gag/pol protein2.9e-1769.84Show/hide
Query:  MSSSIITLLASDKLVGDNFQTWKNNINTILVTDNLKFVLTEECPQLPTSTASRSVRDAYDRWI
        M+SSI+ LLAS+KL GDN+  WK+N+NTILV D+L+FVLTEECPQ PTS A+R+ R AYDRWI
Subjt:  MSSSIITLLASDKLVGDNFQTWKNNINTILVTDNLKFVLTEECPQLPTSTASRSVRDAYDRWI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTAGCTCGATAATAACTTTACTCGCTTCAGATAAATTAGTGGGAGATAACTTCCAGACGTGGAAGAACAATATAAACACGATACTTGTAACCGACAACCTTAAGTT
CGTACTTACTGAGGAGTGTCCTCAGTTGCCGACCTCGACTGCATCACGAAGTGTTCGTGATGCATACGATCGATGGATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTAGCTCGATAATAACTTTACTCGCTTCAGATAAATTAGTGGGAGATAACTTCCAGACGTGGAAGAACAATATAAACACGATACTTGTAACCGACAACCTTAAGTT
CGTACTTACTGAGGAGTGTCCTCAGTTGCCGACCTCGACTGCATCACGAAGTGTTCGTGATGCATACGATCGATGGATTTGA
Protein sequenceShow/hide protein sequence
MSSSIITLLASDKLVGDNFQTWKNNINTILVTDNLKFVLTEECPQLPTSTASRSVRDAYDRWI