CuGenDBv2

Gene ID	Tan0002386
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RRM domain-containing protein
Genome location	LG06:25773047..25776199
RNA-Seq Expression	Tan0002386
Synteny	Tan0002386
Gene Ontology terms	GO:0006396 - RNA processing (biological process) GO:0032991 - protein-containing complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6592987.1 hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sororia]

2.2e-94

90.45

Show/hide

Query:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE
        MGSAT+EQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV++HFIPNFTEPINSSQCALVEMK  KEA SV+SV+AQFPFMMSGMPRPVRA PAE
Subjt:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMRVSDD
        VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMK L ++HVAEAAFLLKQQLVEEEKLAKQQQ+ALK NYKK+EIVE VM DGTARRLARRYNMRV+DD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMRVSDD

KAG7025396.1 hypothetical protein SDJN02_11891, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.2e-94

90.45

Show/hide

Query:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE
        MGSAT+EQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV++HFIPNFTEPINSSQCALVEMK  KEA SV+SV+AQFPFMMSGMPRPVRA PAE
Subjt:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMRVSDD
        VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMK L ++HVAEAAFLLKQQLVEEEKLAKQQQ+ALK NYKK+EIVE VM DGTARRLARRYNMRV+DD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMRVSDD

XP_022959585.1 uncharacterized protein LOC111460615 [Cucurbita moschata]

1.5e-93

89.45

Show/hide

Query:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE
        MGSAT+EQY KFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV++HFIPNFTEPINSSQCALVEMK  KEA SV+S++AQFPFMMSGMPRPVRA PAE
Subjt:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMRVSDD
        VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMK L ++HVAEAAFLLKQQLVEEEKLAKQQQ+ALK NYKK+EIVE VM DGTARRLARRYNMRV+DD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMRVSDD

XP_023004840.1 uncharacterized protein LOC111498019 [Cucurbita maxima]

6.5e-94

89.45

Show/hide

Query:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE
        MGSAT+EQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV++HFIPNFTEPINSSQCALVEMK  KEA SV+SV++QFPFMMSGMPRPVRA PAE
Subjt:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMRVSDD
        VEMFDDRPIKPGRKISFVWLGK+DPDFEVAKKMK L ++HVAEAAFLLKQQLVEEEKLAKQQQ+ALKGNYKK+EI+E VM DGTARRLARRYNMRV+DD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMRVSDD

XP_023514768.1 uncharacterized protein LOC111778981 [Cucurbita pepo subsp. pepo]

2.2e-94

90.45

Show/hide

Query:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE
        MGSAT+EQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV++HFIPNFTEPINSSQCALVEMK  KEA SV+SV+AQFPFMMSGMPRPVRA PAE
Subjt:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMRVSDD
        VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMK L ++HVAEAAFLLKQQLVEEEKLAKQQQ+ALK NYKK+EIVE VM DGTARRLARRYNMRV+DD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMRVSDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAE7 RRM domain-containing protein

5.8e-88

82.91

Show/hide

Query:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE
        MGS  +EQ+A FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVV++HFIPN+TEPINSSQCALVEMK  KEA+SV++V+AQFPFMMSGMPRPVRARPAE
Subjt:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMRVSDD
        VEMFDDRP+KPGRKISF WL  DDPDFEVA+++KRL++KHVAEAAFL+KQ + EEEKLAKQQQE LKGNYKK+EIV+SVMADGTARRLA+ YNMR+SDD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMRVSDD

A0A1S3B3J3 uncharacterized protein LOC103485592

1.1e-89

84.42

Show/hide

Query:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE
        MGSA +EQ++ FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVN+HFIPN+TEPINSSQCALVEMK  KEA+SV++V+AQFPFMMSGMPRPVRARPAE
Subjt:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMRVSDD
         EMFDDRP+KPGRKISF WL  DDPDFEVA+++KRL +KHVAEAAFLLKQ L EEEKLAKQQQE L+GNYKK+EIV+SVMADGTARRLA+ YNMRVSDD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMRVSDD

A0A6J1DB90 uncharacterized protein LOC111018537

1.2e-85

82.41

Show/hide

Query:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE
        MGSAT EQ+A FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV + FIPN+ EP+NSSQCALVEMK LKEA+SV+SV+A+FPFM+SGMPRPVRARPAE
Subjt:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMRVSDD
        VEMFDDRPIKPG KISF WL ++DPDF+VAKKMK   RKH AE AFLLKQQL+EEEKLAKQQQE LKGNYKK EIVESVM DGTARRLA+ Y+MRV DD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMRVSDD

A0A6J1H6P8 uncharacterized protein LOC111460615

7.0e-94

89.45

Show/hide

Query:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE
        MGSAT+EQY KFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV++HFIPNFTEPINSSQCALVEMK  KEA SV+S++AQFPFMMSGMPRPVRA PAE
Subjt:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMRVSDD
        VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMK L ++HVAEAAFLLKQQLVEEEKLAKQQQ+ALK NYKK+EIVE VM DGTARRLARRYNMRV+DD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMRVSDD

A0A6J1KVQ1 uncharacterized protein LOC111498019

3.2e-94

89.45

Show/hide

Query:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE
        MGSAT+EQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV++HFIPNFTEPINSSQCALVEMK  KEA SV+SV++QFPFMMSGMPRPVRA PAE
Subjt:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMRVSDD
        VEMFDDRPIKPGRKISFVWLGK+DPDFEVAKKMK L ++HVAEAAFLLKQQLVEEEKLAKQQQ+ALKGNYKK+EI+E VM DGTARRLARRYNMRV+DD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMRVSDD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G05970.1 RNA-binding (RRM/RBD/RNP motifs) family protein

2.2e-47

49.23

Show/hide

Query:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE
        M +     Y KF E+V+RTVYVD L+P  T PV+ +A +QFGTV  + FIPN+  P       LVEM+  +  ++V+S V+Q PFM++GMPRPVRA  AE
Subjt:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMR
          MF D+P KPGR + F W+  +DPDF+ A+++KRLARKH AE +F+LK  L E EKL+KQQ E    ++KKFE+++ ++ DG A++LA RY+++
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMR

AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein

2.3e-49

49.74

Show/hide

Query:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE
        M +     Y KF E+V+RTVYVD L+P  T PV+ +A +QFGTV  + FIPN+  P       LVEM+  +  ++V+S V+Q PFM++GMPRPVRA  AE
Subjt:  MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMR
          MF D+P KPGR + F W+  +DPDF+ A+++KRLARKH AE +F+LK+QL E EKL+KQQ E    ++KKFE+++ ++ DG A++LA RY+++
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGATCAGCTACGAACGAGCAATATGCTAAGTTTGAGGAAAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCCCCCCAAGTGACTGAGCCTGTCTTGAGAACTGC
TTTAGATCAGTTTGGTACTGTTGTCAATATCCATTTTATTCCAAATTTCACGGAGCCAATTAATAGCTCTCAGTGTGCTCTAGTGGAGATGAAGTATTTGAAGGAGGCGG
AATCTGTCGTCTCGGTGGTAGCTCAGTTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCGCGCCCTGCCGAAGTGGAAATGTTTGATGATCGCCCTATAAAA
CCTGGTAGGAAGATTAGCTTTGTCTGGTTGGGAAAGGATGATCCTGACTTTGAAGTGGCAAAGAAAATGAAGCGTCTTGCTCGGAAACATGTCGCTGAAGCTGCATTCTT
GTTGAAGCAACAGTTGGTGGAAGAGGAGAAGCTTGCAAAGCAGCAACAAGAAGCACTGAAAGGAAACTACAAGAAATTTGAGATTGTTGAAAGTGTAATGGCTGATGGAA
CTGCCCGCAGGTTAGCAAGGCGTTATAATATGCGAGTTTCAGATGATTAA

mRNA sequence

Show/hide mRNA sequence

ATTTTCGTTCCGAAGAAAAAAGGGAAAAAGATTTTTGCCCTAATTTTGGTAGGTATCGTTTCAGCGCCCTGTTATTTCTCTTGCATTATCATTGCCTTCTCCTCATCCCT
GTCAGAATTCAAGCTTTTCTCTGCCACCGGAGAAGGATACCACCACCTCTCACCTTTTTTCAACAAATTCATCTCCATTTCTAAAGGCCCCACTCCTCCATTTTTAGTTC
TCCTTCTACAGGCTCACGCCCCTCGCTCACCGTTGATCATTTTGTTTATCCTCTTCGGACTGATCCTTCTTTATCATTCCACATGGGATCAGCTACGAACGAGCAATATG
CTAAGTTTGAGGAAAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCCCCCCAAGTGACTGAGCCTGTCTTGAGAACTGCTTTAGATCAGTTTGGTACTGTTGTCAAT
ATCCATTTTATTCCAAATTTCACGGAGCCAATTAATAGCTCTCAGTGTGCTCTAGTGGAGATGAAGTATTTGAAGGAGGCGGAATCTGTCGTCTCGGTGGTAGCTCAGTT
CCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCGCGCCCTGCCGAAGTGGAAATGTTTGATGATCGCCCTATAAAACCTGGTAGGAAGATTAGCTTTGTCTGGT
TGGGAAAGGATGATCCTGACTTTGAAGTGGCAAAGAAAATGAAGCGTCTTGCTCGGAAACATGTCGCTGAAGCTGCATTCTTGTTGAAGCAACAGTTGGTGGAAGAGGAG
AAGCTTGCAAAGCAGCAACAAGAAGCACTGAAAGGAAACTACAAGAAATTTGAGATTGTTGAAAGTGTAATGGCTGATGGAACTGCCCGCAGGTTAGCAAGGCGTTATAA
TATGCGAGTTTCAGATGATTAATTGAAAGCTTCGAAGCTTTTTTTACTCTCCTAATTGCCCTGATCTCTACGTGTAAATTTGTACAAATTATCATTTATATGGCCTTAAT
AGAGATTAATTAGAGACTTCTTTTGTGATTTAGAGGGAGAAAGATAGTTAATTAGTGTAATACTCCAATCGACACTCTTTTGGATCTCCCACTTTTTTGTGAACATTGTA
TTTTTTCCATCATGAAGGGTGTTCTGGGTAATG

Protein sequence

Show/hide protein sequence

MGSATNEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNIHFIPNFTEPINSSQCALVEMKYLKEAESVVSVVAQFPFMMSGMPRPVRARPAEVEMFDDRPIK
PGRKISFVWLGKDDPDFEVAKKMKRLARKHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKFEIVESVMADGTARRLARRYNMRVSDD

Tan0002386 (gene) of Snake gourd v1 genome