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Tan0002400 (gene) of Snake gourd v1 genome

Gene IDTan0002400
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG11:56725595..56725906
RNA-Seq ExpressionTan0002400
SyntenyTan0002400
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.6e-1958.25Show/hide
Query:  MARGGKRGR-QVETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKC
        M RG  R     +T         G   S  ESS P  E NMEEQ+  R+ QRL   + SAQ+DPEKKY IERLKALGATTF GTT+PADAE WL LIEKC
Subjt:  MARGGKRGR-QVETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKC

Query:  FRV
        FRV
Subjt:  FRV

KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.2e-1854.37Show/hide
Query:  MARGGKRGR-QVETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKC
        M RG  R     E          G   S  ESS P+ E N+EEQ+  R+ QRL   + SAQ+DPEKKY  ERLKALGATTF GTT+P D E WL LIEKC
Subjt:  MARGGKRGR-QVETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKC

Query:  FRV
        FRV
Subjt:  FRV

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]5.2e-1854.37Show/hide
Query:  MARGGKRGR-QVETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKC
        M RG  R     E          G   S  ESS P+ E N+EEQ+  R+ QRL   + SAQ+DPEKKY  ERLKALGATTF GTT+P D E WL LIEKC
Subjt:  MARGGKRGR-QVETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKC

Query:  FRV
        FRV
Subjt:  FRV

WP_217833179.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]1.6e-1976.92Show/hide
Query:  VSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAE
        +S+GESSHPQ EVN+EEQ+FTRI QRLA S+GS ++DPEKKY IERLKALGATTFEGT DP +AE
Subjt:  VSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAE

XP_038896416.1 uncharacterized protein LOC120084680 [Benincasa hispida]5.5e-2078.12Show/hide
Query:  MEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKCFRVM
        ME+++F RITQRLA SVGS Q DPEKK+ IERLKALGATTF+GTTDP DAE+WL LIEKCF+VM
Subjt:  MEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKCFRVM

TrEMBL top hitse value%identityAlignment
A0A5A7SJ99 DNA/RNA polymerases superfamily protein2.8e-1762.5Show/hide
Query:  GREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKCFRV
        G   S  ESS P  E N+EEQ+  R+ QRL   +  AQ+D EKKY IERLKALGATTF GTT+P DAE WL LIEKCF+V
Subjt:  GREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKCFRV

A0A5A7SKG0 Uncharacterized protein1.2e-1758.7Show/hide
Query:  ETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKCFRVM
        E GT +AT    RE + G+S+H   + NMEE+IF +I QRLA+ V  AQAD EKKY IER+KALGAT F+GT D  + E WL LIEKCF VM
Subjt:  ETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKCFRVM

A0A5A7T1M0 Reverse transcriptase2.5e-1854.37Show/hide
Query:  MARGGKRGR-QVETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKC
        M RG  R     E          G   S  ESS P+ E N+EEQ+  R+ QRL   + SAQ+DPEKKY  ERLKALGATTF GTT+P D E WL LIEKC
Subjt:  MARGGKRGR-QVETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKC

Query:  FRV
        FRV
Subjt:  FRV

A0A5D3BB91 Reverse transcriptase2.5e-1854.37Show/hide
Query:  MARGGKRGR-QVETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKC
        M RG  R     E          G   S  ESS P+ E N+EEQ+  R+ QRL   + SAQ+DPEKKY  ERLKALGATTF GTT+P D E WL LIEKC
Subjt:  MARGGKRGR-QVETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKC

Query:  FRV
        FRV
Subjt:  FRV

A0A5D3DES5 DNA/RNA polymerases superfamily protein7.8e-2058.25Show/hide
Query:  MARGGKRGR-QVETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKC
        M RG  R     +T         G   S  ESS P  E NMEEQ+  R+ QRL   + SAQ+DPEKKY IERLKALGATTF GTT+PADAE WL LIEKC
Subjt:  MARGGKRGR-QVETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKC

Query:  FRV
        FRV
Subjt:  FRV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGACTGGAACTCAAGAAGCTACTGGTGATAGAGGAAGAGAGGTATCAAAGGGAGAGTCTAGTCATCCTCAGCAAGA
GGTGAATATGGAGGAACAGATCTTTACGAGGATAACTCAAAGATTAGCTGAAAGTGTTGGATCAGCACAAGCAGATCCAGAAAAGAAGTATTGCATTGAAAGGCTGAAAG
CCTTAGGTGCAACAACATTTGAAGGCACGACAGATCCCGCTGATGCTGAGGTTTGGTTAAATCTCATTGAGAAGTGCTTTAGGGTCATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGACTGGAACTCAAGAAGCTACTGGTGATAGAGGAAGAGAGGTATCAAAGGGAGAGTCTAGTCATCCTCAGCAAGA
GGTGAATATGGAGGAACAGATCTTTACGAGGATAACTCAAAGATTAGCTGAAAGTGTTGGATCAGCACAAGCAGATCCAGAAAAGAAGTATTGCATTGAAAGGCTGAAAG
CCTTAGGTGCAACAACATTTGAAGGCACGACAGATCCCGCTGATGCTGAGGTTTGGTTAAATCTCATTGAGAAGTGCTTTAGGGTCATGTGA
Protein sequenceShow/hide protein sequence
MARGGKRGRQVETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKCFRVM