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Tan0002441 (gene) of Snake gourd v1 genome

Gene IDTan0002441
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionarabinogalactan peptide 23-like
Genome locationLG09:57157276..57157467
RNA-Seq ExpressionTan0002441
SyntenyTan0002441
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025661.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-1169.84Show/hide
Query:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN
        MEMKK  C  LF A+ V   +AS+ESLSPA APGPSSAAS ALPALGS VGASLVSF+A + N
Subjt:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN
XP_022960230.1 arabinogalactan peptide 23-like [Cucurbita moschata]4.9e-1168.25Show/hide
Query:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN
        MEMKK  C  LF A+ +   +AS+ESLSPA APGPSSAAS ALPALGS VGASLVSF+A + N
Subjt:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN
XP_023004714.1 arabinogalactan peptide 23-like [Cucurbita maxima]9.8e-1269.84Show/hide
Query:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN
        MEMKK  C  LF A+ V   +AS+ESLSPA APGPSSAAS ALPALGS VGASLVSF+A++ N
Subjt:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN
XP_023528634.1 arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo]4.9e-1168.25Show/hide
Query:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN
        MEMK   C  LF A+ V   +AS+ESLSPA APGPSSAAS ALPALGS +GASLVSF+A+ LN
Subjt:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN
XP_038899473.1 arabinogalactan protein 23-like [Benincasa hispida]3.4e-1269.84Show/hide
Query:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN
        MEMKK  C  LF A+ V + +A++ESLSPA APGPSSAAS ALPALGS VGASLV+F+A+FLN
Subjt:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN
TrEMBL top hitse value%identityAlignment
A0A1S3CDX5 arabinogalactan peptide 23-like4.6e-0760.94Show/hide
Query:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFL-AHFLN
        MEMKK  C  LF A+ V   +A++ES+SPA APGPSSAAS ALP L    GAS+VSF+ A+FLN
Subjt:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFL-AHFLN
A0A6J1F3F5 arabinogalactan peptide 23-like6.9e-1166.67Show/hide
Query:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN
        MEMKK  C  LF A+ V   +AS+ESLSPA APGPSSAAS  LPALGS VGASLVS +A++ N
Subjt:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN
A0A6J1H8I1 arabinogalactan peptide 23-like2.4e-1168.25Show/hide
Query:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN
        MEMKK  C  LF A+ +   +AS+ESLSPA APGPSSAAS ALPALGS VGASLVSF+A + N
Subjt:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN
A0A6J1IYE9 arabinogalactan peptide 23-like1.5e-1066.67Show/hide
Query:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN
        MEMK   C  LF A+ V   +AS+ES SPA APGPSSAAS ALPALGS +GASLVSF+A+ LN
Subjt:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN
A0A6J1KX42 arabinogalactan peptide 23-like4.8e-1269.84Show/hide
Query:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN
        MEMKK  C  LF A+ V   +AS+ESLSPA APGPSSAAS ALPALGS VGASLVSF+A++ N
Subjt:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 233.1e-0857.14Show/hide
Query:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN
        MEMKK  C  LF A+ +   MA+ E  +P  APGP+SAAS ALPALGS VGASLVS  +++L+
Subjt:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)2.0e-0754.69Show/hide
Query:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGP-SSAASVALPALGSFVGASLVSFLAHFLN
        MEMKK  C  +F A+ +   MA+      A APGP +S ASVA+PALGS VGASLVS  A++LN
Subjt:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGP-SSAASVALPALGSFVGASLVSFLAHFLN
AT3G20865.1 arabinogalactan protein 407.3e-0546.77Show/hide
Query:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFL
        MEMK  + V LF+++V+ +++++    SPA +PG SSA++VA P +GS V ASL +FLA  L
Subjt:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFL
AT3G57690.1 arabinogalactan protein 232.2e-0957.14Show/hide
Query:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN
        MEMKK  C  LF A+ +   MA+ E  +P  APGP+SAAS ALPALGS VGASLVS  +++L+
Subjt:  MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGAAGAAGTTTGTCTGTGTCACCCTCTTTGTCGCCTCTGTTGTCGGCACAACCATGGCCTCCAATGAGTCTCTCTCTCCTGCCACTGCACCCGGGCCGAGTAG
CGCCGCCTCTGTTGCTCTTCCTGCCCTTGGATCGTTCGTTGGTGCCTCACTTGTTTCCTTCCTCGCCCACTTCTTAAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGAAGAAGTTTGTCTGTGTCACCCTCTTTGTCGCCTCTGTTGTCGGCACAACCATGGCCTCCAATGAGTCTCTCTCTCCTGCCACTGCACCCGGGCCGAGTAG
CGCCGCCTCTGTTGCTCTTCCTGCCCTTGGATCGTTCGTTGGTGCCTCACTTGTTTCCTTCCTCGCCCACTTCTTAAACTGA
Protein sequenceShow/hide protein sequence
MEMKKFVCVTLFVASVVGTTMASNESLSPATAPGPSSAASVALPALGSFVGASLVSFLAHFLN