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Tan0002449 (gene) of Snake gourd v1 genome

Gene IDTan0002449
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRING-type domain-containing protein
Genome locationLG06:77034519..77035469
RNA-Seq ExpressionTan0002449
SyntenyTan0002449
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2603827.1 nuclear ribonuclease Z-like [Pyrus ussuriensis x Pyrus communis]4.2e-1031.67Show/hide
Query:  TSLVPFYISFTSTALLRDH------AQAADWLHGGTSDSYVLRFLKPAPDALRTLKDHSF-DGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQ
        T+++P ++      LL            ADW+   +  +Y  R +     ++  L+   F +       +T C++C+E F D  G +VSRLPC H +H  
Subjt:  TSLVPFYISFTSTALLRDH------AQAADWLHGGTSDSYVLRFLKPAPDALRTLKDHSF-DGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQ

Query:  CISQWLASDHRCPVCRSPLP
        CI QWL + H CP+CR P+P
Subjt:  CISQWLASDHRCPVCRSPLP

KAE7997378.1 hypothetical protein FH972_002019 [Carpinus fangiana]9.3e-1031.33Show/hide
Query:  STALLRDHAQAADWLHGGTSDSYVLRFLKPAP---DALRTLKDHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCPVC
        +T L+ D   + + +  G  +S      +P P    A+  LK  +F+          C++C E F  + G  ++RLPCSH++H  CI +WL + HRCP+C
Subjt:  STALLRDHAQAADWLHGGTSDSYVLRFLKPAP---DALRTLKDHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCPVC

Query:  RSPLPWVHS-----LFPEAFSCSSSSSSYLDHDDDHDLVDQSDESQ-------ASIAAAQGIFHKL
        R PLP++       +F   +  S   SS+L+  D   LV  + E Q       + I A  G FH L
Subjt:  RSPLPWVHS-----LFPEAFSCSSSSSSYLDHDDDHDLVDQSDESQ-------ASIAAAQGIFHKL

KAE8022191.1 hypothetical protein FH972_008015 [Carpinus fangiana]1.5e-1234.38Show/hide
Query:  PFYISFTSTALL----RDHAQAADWLHGGTSDSYVLRFLKPAP---DALRTLKDHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQ
        P  ++F  T L+     D  ++ D +  G  +S  +   +P P    A+  L+  +F+  L    +  C++C E F  + G  ++RLPCSH++H  CI +
Subjt:  PFYISFTSTALL----RDHAQAADWLHGGTSDSYVLRFLKPAP---DALRTLKDHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQ

Query:  WLASDHRCPVCRSPLPWVHSLFPEAFSC
        WL   HRCP+CR PLP+V  +F   FSC
Subjt:  WLASDHRCPVCRSPLPWVHSLFPEAFSC

TXG71295.1 hypothetical protein EZV62_006230 [Acer yangbiense]5.4e-1036.73Show/hide
Query:  LRDHAQAADWLHGGTSDSYVLRFLKPAPDALRTLKDHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCPVCRSPLP
        L D  Q  D     ++ S ++RF   + DA++ L+   FD     DD+  CM+CLE F    G    R+PC HL+H +C+ +WL + H CP+CR  +P
Subjt:  LRDHAQAADWLHGGTSDSYVLRFLKPAPDALRTLKDHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCPVCRSPLP

TXG71297.1 hypothetical protein EZV62_006232 [Acer yangbiense]5.4e-1037.76Show/hide
Query:  LRDHAQAADWLHGGTSDSYVLRFLKPAPDALRTLKDHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCPVCRSPLP
        L D+ Q  D     ++ S + RF   + DA++ L+   FD     DD+  CM+CLE F    G    R+PC HL+H +CI +WL + H CP+CR  +P
Subjt:  LRDHAQAADWLHGGTSDSYVLRFLKPAPDALRTLKDHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCPVCRSPLP

TrEMBL top hitse value%identityAlignment
A0A5C7IPI4 RING-type domain-containing protein2.6e-1037.76Show/hide
Query:  LRDHAQAADWLHGGTSDSYVLRFLKPAPDALRTLKDHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCPVCRSPLP
        L D+ Q  D     ++ S + RF   + DA++ L+   FD     DD+  CM+CLE F    G    R+PC HL+H +CI +WL + H CP+CR  +P
Subjt:  LRDHAQAADWLHGGTSDSYVLRFLKPAPDALRTLKDHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCPVCRSPLP

A0A5C7IPW5 RING-type domain-containing protein2.6e-1036.73Show/hide
Query:  LRDHAQAADWLHGGTSDSYVLRFLKPAPDALRTLKDHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCPVCRSPLP
        L D  Q  D     ++ S ++RF   + DA++ L+   FD     DD+  CM+CLE F    G    R+PC HL+H +C+ +WL + H CP+CR  +P
Subjt:  LRDHAQAADWLHGGTSDSYVLRFLKPAPDALRTLKDHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCPVCRSPLP

A0A5N5FLS4 Nuclear ribonuclease Z-like2.0e-1031.67Show/hide
Query:  TSLVPFYISFTSTALLRDH------AQAADWLHGGTSDSYVLRFLKPAPDALRTLKDHSF-DGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQ
        T+++P ++      LL            ADW+   +  +Y  R +     ++  L+   F +       +T C++C+E F D  G +VSRLPC H +H  
Subjt:  TSLVPFYISFTSTALLRDH------AQAADWLHGGTSDSYVLRFLKPAPDALRTLKDHSF-DGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQ

Query:  CISQWLASDHRCPVCRSPLP
        CI QWL + H CP+CR P+P
Subjt:  CISQWLASDHRCPVCRSPLP

A0A5N6QDK1 RING-type domain-containing protein4.5e-1031.33Show/hide
Query:  STALLRDHAQAADWLHGGTSDSYVLRFLKPAP---DALRTLKDHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCPVC
        +T L+ D   + + +  G  +S      +P P    A+  LK  +F+          C++C E F  + G  ++RLPCSH++H  CI +WL + HRCP+C
Subjt:  STALLRDHAQAADWLHGGTSDSYVLRFLKPAP---DALRTLKDHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCPVC

Query:  RSPLPWVHS-----LFPEAFSCSSSSSSYLDHDDDHDLVDQSDESQ-------ASIAAAQGIFHKL
        R PLP++       +F   +  S   SS+L+  D   LV  + E Q       + I A  G FH L
Subjt:  RSPLPWVHS-----LFPEAFSCSSSSSSYLDHDDDHDLVDQSDESQ-------ASIAAAQGIFHKL

A0A5N6R0F2 RING-type domain-containing protein7.4e-1334.38Show/hide
Query:  PFYISFTSTALL----RDHAQAADWLHGGTSDSYVLRFLKPAP---DALRTLKDHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQ
        P  ++F  T L+     D  ++ D +  G  +S  +   +P P    A+  L+  +F+  L    +  C++C E F  + G  ++RLPCSH++H  CI +
Subjt:  PFYISFTSTALL----RDHAQAADWLHGGTSDSYVLRFLKPAP---DALRTLKDHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQ

Query:  WLASDHRCPVCRSPLPWVHSLFPEAFSC
        WL   HRCP+CR PLP+V  +F   FSC
Subjt:  WLASDHRCPVCRSPLPWVHSLFPEAFSC

SwissProt top hitse value%identityAlignment
O00237 E3 ubiquitin-protein ligase RNF1031.2e-0755.1Show/hide
Query:  TCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASD-HRCPVCRSP
        T C+VCLE F  ++GC +  LPC H+FH  CI  WLA   H CPVCR P
Subjt:  TCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASD-HRCPVCRSP

P0CH30 E3 ubiquitin-protein ligase RING11.4e-0826.67Show/hide
Query:  YINPNPS------FLLYSSSTFRHFPPFHFSSFSAVRHFVLSTLSAISIPTSDPDV---------DSLAYLIFSFTHHH--QLRSLTSLVPFYI-SFTST
        ++NPNP+        L  S  F    P  F S S+      +T S+ SI  ++P +         D  A+  F+F  +H   LRS  + + F I +  S 
Subjt:  YINPNPS------FLLYSSSTFRHFPPFHFSSFSAVRHFVLSTLSAISIPTSDPDV---------DSLAYLIFSFTHHH--QLRSLTSLVPFYI-SFTST

Query:  ALLRDHAQAADWLHGGTSDSYVLRFLKPAPD----------ALRTLKDHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDH
           R  A   D+  G   +  + +  +  P+          A+  L   +   S L  +   C VC++ F  + G    ++PC HL+H  C+  WL   +
Subjt:  ALLRDHAQAADWLHGGTSDSYVLRFLKPAPD----------ALRTLKDHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDH

Query:  RCPVCRSPLP
         CPVCR  LP
Subjt:  RCPVCRSPLP

Q6NRV8 E3 ubiquitin-protein ligase arkadia-B1.2e-0737.5Show/hide
Query:  SYVLRFLKPAPDALRTLKDHS-FDGSLLCDDET--CCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCPVCR
        +Y  ++ K + D     K HS  DG    +++T   C +CL   + + G  V RLPC HLFH  C+ QWL ++ +CP+CR
Subjt:  SYVLRFLKPAPDALRTLKDHS-FDGSLLCDDET--CCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCPVCR

Q9EPZ8 E3 ubiquitin-protein ligase RNF1034.1e-0852.63Show/hide
Query:  GSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASD-HRCPVCRSP
        G+L C   T C+VCLE F  ++GC +  LPC H+FH  CI  WLA   H CPVCR P
Subjt:  GSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASD-HRCPVCRSP

Q9R1W3 E3 ubiquitin-protein ligase RNF1034.1e-0852.63Show/hide
Query:  GSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASD-HRCPVCRSP
        G+L C   T C+VCLE F  ++GC +  LPC H+FH  CI  WLA   H CPVCR P
Subjt:  GSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASD-HRCPVCRSP

Arabidopsis top hitse value%identityAlignment
AT1G60360.1 RING/U-box superfamily protein2.2e-0929.36Show/hide
Query:  HAQAADWLHGGTSDSYVLRFL----KPAP-----DALRTLKDHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCPVCR
        H  + D+  G +S   ++  L    +P P       + +L         L +D + C VC+E F+   G   + LPC H++H  CI  WL  ++ CP+CR
Subjt:  HAQAADWLHGGTSDSYVLRFL----KPAP-----DALRTLKDHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCPVCR

Query:  SPLPWVHSL
          LP V+++
Subjt:  SPLPWVHSL

AT1G74620.1 RING/U-box superfamily protein2.9e-0942.31Show/hide
Query:  DETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCPVCRSPLP
        +E  C +C+E +++     V++LPC H FH  CI++WL  +H CP+CRS +P
Subjt:  DETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCPVCRSPLP

AT3G60080.1 RING/U-box superfamily protein2.2e-0935.51Show/hide
Query:  LLRDHAQAADWLHGGTSDSYVLRFLKPAP-DALRTLKDHSFDGSLLC-------DDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCP
        LLR  A         +S S     LK +  D++ T++      SLLC       D    C VC E F+     R  RLPCSH++H  CI  WL+  + CP
Subjt:  LLRDHAQAADWLHGGTSDSYVLRFLKPAP-DALRTLKDHSFDGSLLC-------DDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCP

Query:  VCRSPLP
        +CR  LP
Subjt:  VCRSPLP

AT5G55970.1 RING/U-box superfamily protein3.8e-0941.27Show/hide
Query:  DHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCPVCRSPLP
        D   D + + DD  CC +CL  + D+    V +LPCSH FH +C+ QWL     CP+C+  LP
Subjt:  DHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCPVCRSPLP

AT5G55970.2 RING/U-box superfamily protein3.8e-0941.27Show/hide
Query:  DHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCPVCRSPLP
        D   D + + DD  CC +CL  + D+    V +LPCSH FH +C+ QWL     CP+C+  LP
Subjt:  DHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCSHLFHFQCISQWLASDHRCPVCRSPLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAACTCAGCCACATTCGAGCGCGTTCTATTCCCGGAGTCGCTCCGATCGACAGCCAAAGCCCCGACCGGAGCCGGGTGGTCGGTCAGCTACGAGTGCTTCCTTTT
CAGCGCCAACCTTCACTCCTTCACTACTTTCACCGATGGCTTCCTCTTCCGAATCCAAATCTACAACTTCCTCCGCCCTCTCTACATTAATCCCAATCCCTCTTTCCTCC
TCTACTCCTCCTCCACCTTCCGCCACTTCCCTCCCTTCCACTTCTCCTCCTTCTCCGCCGTCCGCCACTTCGTCCTCTCCACACTCTCCGCCATCTCCATCCCCACCTCC
GACCCCGACGTCGACTCTCTCGCTTACCTCATCTTCTCCTTCACTCATCACCACCAACTCCGCTCCCTCACATCCCTCGTGCCCTTCTACATCTCCTTCACCTCCACCGC
CCTCCTCCGAGACCACGCCCAAGCCGCCGACTGGCTCCACGGCGGCACCTCTGACTCCTACGTCCTCAGGTTCTTAAAGCCCGCCCCTGACGCCCTCCGAACCCTAAAAG
ATCACAGCTTTGATGGGTCTTTGTTGTGTGACGATGAAACTTGTTGCATGGTTTGTTTGGAAGGGTTTGTTGATCAACATGGCTGCCGTGTGAGTCGGCTGCCGTGTTCT
CATTTGTTTCACTTTCAGTGCATTTCTCAGTGGCTTGCTTCTGACCATCGCTGCCCCGTTTGCCGCTCTCCTTTGCCTTGGGTTCACTCACTCTTCCCTGAGGCTTTTTC
TTGTTCTTCTTCGTCGTCGTCGTATCTTGACCATGATGATGATCATGATTTGGTGGATCAGTCCGACGAGTCCCAGGCTAGTATTGCAGCTGCGCAAGGGATTTTTCACA
AACTAGGGTGGCTTCTTAACAACTATGTCAAAAATATGTTCAGTTTCATCAACTTCTTTTCAACAATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTAAACTCAGCCACATTCGAGCGCGTTCTATTCCCGGAGTCGCTCCGATCGACAGCCAAAGCCCCGACCGGAGCCGGGTGGTCGGTCAGCTACGAGTGCTTCCTTTT
CAGCGCCAACCTTCACTCCTTCACTACTTTCACCGATGGCTTCCTCTTCCGAATCCAAATCTACAACTTCCTCCGCCCTCTCTACATTAATCCCAATCCCTCTTTCCTCC
TCTACTCCTCCTCCACCTTCCGCCACTTCCCTCCCTTCCACTTCTCCTCCTTCTCCGCCGTCCGCCACTTCGTCCTCTCCACACTCTCCGCCATCTCCATCCCCACCTCC
GACCCCGACGTCGACTCTCTCGCTTACCTCATCTTCTCCTTCACTCATCACCACCAACTCCGCTCCCTCACATCCCTCGTGCCCTTCTACATCTCCTTCACCTCCACCGC
CCTCCTCCGAGACCACGCCCAAGCCGCCGACTGGCTCCACGGCGGCACCTCTGACTCCTACGTCCTCAGGTTCTTAAAGCCCGCCCCTGACGCCCTCCGAACCCTAAAAG
ATCACAGCTTTGATGGGTCTTTGTTGTGTGACGATGAAACTTGTTGCATGGTTTGTTTGGAAGGGTTTGTTGATCAACATGGCTGCCGTGTGAGTCGGCTGCCGTGTTCT
CATTTGTTTCACTTTCAGTGCATTTCTCAGTGGCTTGCTTCTGACCATCGCTGCCCCGTTTGCCGCTCTCCTTTGCCTTGGGTTCACTCACTCTTCCCTGAGGCTTTTTC
TTGTTCTTCTTCGTCGTCGTCGTATCTTGACCATGATGATGATCATGATTTGGTGGATCAGTCCGACGAGTCCCAGGCTAGTATTGCAGCTGCGCAAGGGATTTTTCACA
AACTAGGGTGGCTTCTTAACAACTATGTCAAAAATATGTTCAGTTTCATCAACTTCTTTTCAACAATGTGA
Protein sequenceShow/hide protein sequence
MVNSATFERVLFPESLRSTAKAPTGAGWSVSYECFLFSANLHSFTTFTDGFLFRIQIYNFLRPLYINPNPSFLLYSSSTFRHFPPFHFSSFSAVRHFVLSTLSAISIPTS
DPDVDSLAYLIFSFTHHHQLRSLTSLVPFYISFTSTALLRDHAQAADWLHGGTSDSYVLRFLKPAPDALRTLKDHSFDGSLLCDDETCCMVCLEGFVDQHGCRVSRLPCS
HLFHFQCISQWLASDHRCPVCRSPLPWVHSLFPEAFSCSSSSSSYLDHDDDHDLVDQSDESQASIAAAQGIFHKLGWLLNNYVKNMFSFINFFSTM