| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0025159.1 gag/pol protein [Cucumis melo var. makuwa] | 7.8e-157 | 54.88 | Show/hide |
Query: MSSLIIALLKSECLTGENYTTWKSNLNMILVVDELRFVLTEKCPQVPARSASQSVKDAYDRWIKANDKAKVYILASLSEVLAKKHKGMVSAREIMSPLQN
MSS IIALLK + LTGENY TWKS LNMILV+ +L FVL E+CP P + ASQSV+D YDRW KANDKA+++ILAS+S++L+KKH+ MV+AR+IM L+
Subjt: MSSLIIALLKSECLTGENYTTWKSNLNMILVVDELRFVLTEKCPQVPARSASQSVKDAYDRWIKANDKAKVYILASLSEVLAKKHKGMVSAREIMSPLQN
Query: IFGQLSGQLRHESLKYVYNSRMKEGSSVKEHVLDLMVHFNVEDMNGAVIDKQSQKTQKKKIGGKGKAPAAADKGKGKPKVADKGKCFHCNVDGHWKRNDP
+FGQ S Q++ E+ V++ R SS S+K QK+K GK K P A + KGK KVA K K FHCNVD HWK N P
Subjt: IFGQLSGQLRHESLKYVYNSRMKEGSSVKEHVLDLMVHFNVEDMNGAVIDKQSQKTQKKKIGGKGKAPAAADKGKGKPKVADKGKCFHCNVDGHWKRNDP
Query: KYLVELKEK------------------------------------------------------------------KGKMTKQPFTGKGYRAKKPLELIHS
KYLV+ KE +GKMTK+PFT KGYRAK+PLELIHS
Subjt: KYLVELKEK------------------------------------------------------------------KGKMTKQPFTGKGYRAKKPLELIHS
Query: DLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDYLIEHGIQSQLAQP---------N
DLCG +NVKAR +EYFISFID YSRYGYLYLM H SEAL+KFKEYKTEVEN L K IK LRSDRGGEY DLRFQDY+IEHGIQSQL+ P N
Subjt: DLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDYLIEHGIQSQLAQP---------N
Query: TPQQN-------------------------AHMLWTNPKKLEPRSRLCQFVGYPKETRGCLFYDPQENKVLVLTNTTFLEEDNMRNLKPRT---------
P ++ H+L TNPKKL+ RSRLCQFVGYPKETRG LF+DPQEN+V V TN TFLEED+MRN KPR+
Subjt: TPQQN-------------------------AHMLWTNPKKLEPRSRLCQFVGYPKETRGCLFYDPQENKVLVLTNTTFLEEDNMRNLKPRT---------
Query: ---------GPSSRVDEEVGTSSQSRPSQLWGMPRRSGRVVSQPDRYLGLTETQVVILFDGVEDPLSYKQAMNDVDKHQWIKVMDLEMESMYFNSVWELV
GPSSRVDE TS QS PSQ MPRRSGRVVSQP+RYLGLTETQ VI DGVEDPLSYKQAMNDVDK QW+K MDLEMESMYFN VWELV
Subjt: ---------GPSSRVDEEVGTSSQSRPSQLWGMPRRSGRVVSQPDRYLGLTETQVVILFDGVEDPLSYKQAMNDVDKHQWIKVMDLEMESMYFNSVWELV
Query: DQPEG
D PEG
Subjt: DQPEG
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| KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa] | 1.4e-161 | 52.83 | Show/hide |
Query: MSSLIIALLKSECLTGENYTTWKSNLNMILVVDELRFVLTEKCPQVPARSASQSVKDAYDRWIKANDKAKVYILASLSEVLAKKHKGMVSAREIMSPLQN
MSS IIALLK + LTGENY TWKS LNMILV+ +L FVL E+CP P + ASQSV+DAYDRW KANDKA+++ILAS+S++L+KKH+ MV+AR+IM L+
Subjt: MSSLIIALLKSECLTGENYTTWKSNLNMILVVDELRFVLTEKCPQVPARSASQSVKDAYDRWIKANDKAKVYILASLSEVLAKKHKGMVSAREIMSPLQN
Query: IFGQLSGQLRHESLKYVYNSRMKEGSSVKEHVLDLMVHFNVEDMNGAVIDKQSQKTQKKKIGGKGKAPAAADKGKGKPKVADKGKCFHCNVDGHWKRNDP
+FGQ S Q++ E+ V +S+ + S S+K QK+K GKGK P A + KGK KVA K KCFHCNVD HWK N P
Subjt: IFGQLSGQLRHESLKYVYNSRMKEGSSVKEHVLDLMVHFNVEDMNGAVIDKQSQKTQKKKIGGKGKAPAAADKGKGKPKVADKGKCFHCNVDGHWKRNDP
Query: KYLVELKEK-----------------------------------------------------------------------------KGKMTKQPFTGKGY
KYLV+ KEK +GKMTK+PFTGKGY
Subjt: KYLVELKEK-----------------------------------------------------------------------------KGKMTKQPFTGKGY
Query: RAKKPLELIHSDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDYLIEHGIQSQLAQ
RAK+PLELIHSDLCGP+NVKAR +EYFISFID YSRYGYLYLM H SEAL+KFKEYKTEVEN L K IK LRSDRGGEY DLRFQDY+IEHGIQSQL+
Subjt: RAKKPLELIHSDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDYLIEHGIQSQLAQ
Query: PNTPQQN-----------------------------------------------------------------------AHMLWTNPKKLEPRSRLCQFVG
P TPQQN AH+L TNPKKLEPRSRLCQFVG
Subjt: PNTPQQN-----------------------------------------------------------------------AHMLWTNPKKLEPRSRLCQFVG
Query: YPKETRGCLFYDPQENKVLVLTNTTFLEEDNMRNLKPRT------------------GPSSRVDEEVGTSSQSRPSQLWGMPRRSGRVVSQPDRYLGLTE
YPKETRG LF+DPQEN+V V TN TFLEED+MRN KPR+ GPSSRVDE TS QS PSQ MPRRSGRVVSQP+RYLGLTE
Subjt: YPKETRGCLFYDPQENKVLVLTNTTFLEEDNMRNLKPRT------------------GPSSRVDEEVGTSSQSRPSQLWGMPRRSGRVVSQPDRYLGLTE
Query: TQVVILFDGVEDPLSYKQAMNDVDKHQWIKVMDLEMESMYFNSVWELVDQPEG
TQVVI DGVEDPLSYKQAMNDVDK QW+K MDLEMESMYFNSVWELVD PEG
Subjt: TQVVILFDGVEDPLSYKQAMNDVDKHQWIKVMDLEMESMYFNSVWELVDQPEG
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| KAA0060254.1 gag/pol protein [Cucumis melo var. makuwa] | 5.6e-155 | 49.07 | Show/hide |
Query: MSSLIIALLKSECLTGENYTTWKSNLNMILVVDELRFVLTEKCPQVPARSASQSVKDAYDRWIKANDKAKVYILASLSEVLAKKHKGMVSAREIMSPLQN
M++ + +L ++ L G NY +WK+ +N++L++D+L+FVL E+CPQVPA +A+Q+V++ Y+RW K N+K + YILASLSEVLAKKH+ M++AREIM LQ
Subjt: MSSLIIALLKSECLTGENYTTWKSNLNMILVVDELRFVLTEKCPQVPARSASQSVKDAYDRWIKANDKAKVYILASLSEVLAKKHKGMVSAREIMSPLQN
Query: IFGQLSGQLRHESLKYVYNSRMKEGSSVKEHVLDLMVHFNVEDMNGAVIDKQSQ--------------------------------KTQKKKIGGKG-KA
+FGQ S Q+ H++LKY+YN+RM EG+SV+EHVL++MVHFNV +MNGAVID+ SQ K KKK GG+G KA
Subjt: IFGQLSGQLRHESLKYVYNSRMKEGSSVKEHVLDLMVHFNVEDMNGAVIDKQSQ--------------------------------KTQKKKIGGKG-KA
Query: PAAADKGKGKPKVADKGKCFHCNVDGHWKRNDPKYLVELKEKK----------------------------------GKMTKQPFTGKGYRAKKPLELIH
AA K K K A KG CFH N +GHWKRN PKYL E K+ K GKMTK+PFTGKG+RAK+PLEL+H
Subjt: PAAADKGKGKPKVADKGKCFHCNVDGHWKRNDPKYLVELKEKK----------------------------------GKMTKQPFTGKGYRAKKPLELIH
Query: SDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDYLIEHGIQSQLAQPNTPQQN---
SDLCGP+NVKAR E+EYFI+F D YSRYGY+YLM H SEAL+KFKEYK EVENAL KTIKT RSDRGGEY DL+FQ+YL+E I SQL+ P TPQQN
Subjt: SDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDYLIEHGIQSQLAQPNTPQQN---
Query: --------------------------------------------------------------------AHMLWTNPKKLEPRSRLCQFVGYPKETRGCLF
AH+L NPKKLEPRS+LC FVGYPK TRG F
Subjt: --------------------------------------------------------------------AHMLWTNPKKLEPRSRLCQFVGYPKETRGCLF
Query: YDPQENKVLVLTNTTFLEEDNMRNLKPR------------TGPSSRVDEE---------VGTSSQSRPSQLWGMPRRSGRVVSQPDRYLGLTETQVVILF
YD ++NKV VLTN TFLE+D++R KPR T PS+RV EE VG+S+++ Q PRRSGRV + P RY+ LTET VI
Subjt: YDPQENKVLVLTNTTFLEEDNMRNLKPR------------TGPSSRVDEE---------VGTSSQSRPSQLWGMPRRSGRVVSQPDRYLGLTETQVVILF
Query: DGVEDPLSYKQAMNDVDKHQWIKVMDLEMESMYFNSVWELVDQPEG
+EDPL++K+AM DVDK +WIK M+LE+ESMYFNSVW+LVDQP+G
Subjt: DGVEDPLSYKQAMNDVDKHQWIKVMDLEMESMYFNSVWELVDQPEG
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| TYJ97618.1 gag/pol protein [Cucumis melo var. makuwa] | 5.0e-156 | 49.23 | Show/hide |
Query: MSSLIIALLKSECLTGENYTTWKSNLNMILVVDELRFVLTEKCPQVPARSASQSVKDAYDRWIKANDKAKVYILASLSEVLAKKHKGMVSAREIMSPLQN
M++ + +L ++ L G NY +WK+ +N++L++D+L+FVL E+CPQVPA +A+Q+V++ Y+RW K N+K + YILASLSEVLAKKH+ M++AREIM LQ
Subjt: MSSLIIALLKSECLTGENYTTWKSNLNMILVVDELRFVLTEKCPQVPARSASQSVKDAYDRWIKANDKAKVYILASLSEVLAKKHKGMVSAREIMSPLQN
Query: IFGQLSGQLRHESLKYVYNSRMKEGSSVKEHVLDLMVHFNVEDMNGAVIDKQSQ--------------------------------KTQKKKIGGKG-KA
+FGQ S Q+ H++LKY+YN+RM EG+SV+EHVL++MVHFNV +MNGAVID+ SQ K KKK GG+G KA
Subjt: IFGQLSGQLRHESLKYVYNSRMKEGSSVKEHVLDLMVHFNVEDMNGAVIDKQSQ--------------------------------KTQKKKIGGKG-KA
Query: PAAADKGKGKPKVADKGKCFHCNVDGHWKRNDPKYLVELKEKK----------------------------------GKMTKQPFTGKGYRAKKPLELIH
AA K K K A KG CFH N +GHWKRN PKYL E K+ K GKMTK+PFTGKG+RAK+PLEL+H
Subjt: PAAADKGKGKPKVADKGKCFHCNVDGHWKRNDPKYLVELKEKK----------------------------------GKMTKQPFTGKGYRAKKPLELIH
Query: SDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDYLIEHGIQSQLAQPNTPQQN---
SDLCGP+NVKAR E+EYFI+F D YSRYGY+YLM H SEAL+KFKEYK EVENAL KTIKT RSDRGGEY DL+FQ+YL+E I SQL+ P TPQQN
Subjt: SDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDYLIEHGIQSQLAQPNTPQQN---
Query: --------------------------------------------------------------------AHMLWTNPKKLEPRSRLCQFVGYPKETRGCLF
AH+L NPKKLEPRS+LC FVGYPK TRG F
Subjt: --------------------------------------------------------------------AHMLWTNPKKLEPRSRLCQFVGYPKETRGCLF
Query: YDPQENKVLVLTNTTFLEEDNMRNLKPR------------TGPSSRVDEE---------VGTSSQSRPSQLWGMPRRSGRVVSQPDRYLGLTETQVVILF
YDP++NKV V TN TFLEED++R KPR T PS+RV EE VG+S+++ Q PRRSGRV + P RY+ LTET VI
Subjt: YDPQENKVLVLTNTTFLEEDNMRNLKPR------------TGPSSRVDEE---------VGTSSQSRPSQLWGMPRRSGRVVSQPDRYLGLTETQVVILF
Query: DGVEDPLSYKQAMNDVDKHQWIKVMDLEMESMYFNSVWELVDQPEG
+EDPL++K+AM DVDK +WIK M+LE+ESMYFNSVW+LVDQP+G
Subjt: DGVEDPLSYKQAMNDVDKHQWIKVMDLEMESMYFNSVWELVDQPEG
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| TYK02840.1 gag/pol protein [Cucumis melo var. makuwa] | 1.4e-161 | 52.83 | Show/hide |
Query: MSSLIIALLKSECLTGENYTTWKSNLNMILVVDELRFVLTEKCPQVPARSASQSVKDAYDRWIKANDKAKVYILASLSEVLAKKHKGMVSAREIMSPLQN
MSS IIALLK + LTGENY TWKS LNMILV+ +L FVL E+CP P + ASQSV+DAYDRW KANDKA+++ILAS+S++L+KKH+ MV+AR+IM L+
Subjt: MSSLIIALLKSECLTGENYTTWKSNLNMILVVDELRFVLTEKCPQVPARSASQSVKDAYDRWIKANDKAKVYILASLSEVLAKKHKGMVSAREIMSPLQN
Query: IFGQLSGQLRHESLKYVYNSRMKEGSSVKEHVLDLMVHFNVEDMNGAVIDKQSQKTQKKKIGGKGKAPAAADKGKGKPKVADKGKCFHCNVDGHWKRNDP
+FGQ S Q++ E+ V +S+ + S S+K QK+K GKGK P A + KGK KVA K KCFHCNVD HWK N P
Subjt: IFGQLSGQLRHESLKYVYNSRMKEGSSVKEHVLDLMVHFNVEDMNGAVIDKQSQKTQKKKIGGKGKAPAAADKGKGKPKVADKGKCFHCNVDGHWKRNDP
Query: KYLVELKEK-----------------------------------------------------------------------------KGKMTKQPFTGKGY
KYLV+ KEK +GKMTK+PFTGKGY
Subjt: KYLVELKEK-----------------------------------------------------------------------------KGKMTKQPFTGKGY
Query: RAKKPLELIHSDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDYLIEHGIQSQLAQ
RAK+PLELIHSDLCGP+NVKAR +EYFISFID YSRYGYLYLM H SEAL+KFKEYKTEVEN L K IK LRSDRGGEY DLRFQDY+IEHGIQSQL+
Subjt: RAKKPLELIHSDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDYLIEHGIQSQLAQ
Query: PNTPQQN-----------------------------------------------------------------------AHMLWTNPKKLEPRSRLCQFVG
P TPQQN AH+L TNPKKLEPRSRLCQFVG
Subjt: PNTPQQN-----------------------------------------------------------------------AHMLWTNPKKLEPRSRLCQFVG
Query: YPKETRGCLFYDPQENKVLVLTNTTFLEEDNMRNLKPRT------------------GPSSRVDEEVGTSSQSRPSQLWGMPRRSGRVVSQPDRYLGLTE
YPKETRG LF+DPQEN+V V TN TFLEED+MRN KPR+ GPSSRVDE TS QS PSQ MPRRSGRVVSQP+RYLGLTE
Subjt: YPKETRGCLFYDPQENKVLVLTNTTFLEEDNMRNLKPRT------------------GPSSRVDEEVGTSSQSRPSQLWGMPRRSGRVVSQPDRYLGLTE
Query: TQVVILFDGVEDPLSYKQAMNDVDKHQWIKVMDLEMESMYFNSVWELVDQPEG
TQVVI DGVEDPLSYKQAMNDVDK QW+K MDLEMESMYFNSVWELVD PEG
Subjt: TQVVILFDGVEDPLSYKQAMNDVDKHQWIKVMDLEMESMYFNSVWELVDQPEG
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SIN2 Gag/pol protein | 3.8e-157 | 54.88 | Show/hide |
Query: MSSLIIALLKSECLTGENYTTWKSNLNMILVVDELRFVLTEKCPQVPARSASQSVKDAYDRWIKANDKAKVYILASLSEVLAKKHKGMVSAREIMSPLQN
MSS IIALLK + LTGENY TWKS LNMILV+ +L FVL E+CP P + ASQSV+D YDRW KANDKA+++ILAS+S++L+KKH+ MV+AR+IM L+
Subjt: MSSLIIALLKSECLTGENYTTWKSNLNMILVVDELRFVLTEKCPQVPARSASQSVKDAYDRWIKANDKAKVYILASLSEVLAKKHKGMVSAREIMSPLQN
Query: IFGQLSGQLRHESLKYVYNSRMKEGSSVKEHVLDLMVHFNVEDMNGAVIDKQSQKTQKKKIGGKGKAPAAADKGKGKPKVADKGKCFHCNVDGHWKRNDP
+FGQ S Q++ E+ V++ R SS S+K QK+K GK K P A + KGK KVA K K FHCNVD HWK N P
Subjt: IFGQLSGQLRHESLKYVYNSRMKEGSSVKEHVLDLMVHFNVEDMNGAVIDKQSQKTQKKKIGGKGKAPAAADKGKGKPKVADKGKCFHCNVDGHWKRNDP
Query: KYLVELKEK------------------------------------------------------------------KGKMTKQPFTGKGYRAKKPLELIHS
KYLV+ KE +GKMTK+PFT KGYRAK+PLELIHS
Subjt: KYLVELKEK------------------------------------------------------------------KGKMTKQPFTGKGYRAKKPLELIHS
Query: DLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDYLIEHGIQSQLAQP---------N
DLCG +NVKAR +EYFISFID YSRYGYLYLM H SEAL+KFKEYKTEVEN L K IK LRSDRGGEY DLRFQDY+IEHGIQSQL+ P N
Subjt: DLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDYLIEHGIQSQLAQP---------N
Query: TPQQN-------------------------AHMLWTNPKKLEPRSRLCQFVGYPKETRGCLFYDPQENKVLVLTNTTFLEEDNMRNLKPRT---------
P ++ H+L TNPKKL+ RSRLCQFVGYPKETRG LF+DPQEN+V V TN TFLEED+MRN KPR+
Subjt: TPQQN-------------------------AHMLWTNPKKLEPRSRLCQFVGYPKETRGCLFYDPQENKVLVLTNTTFLEEDNMRNLKPRT---------
Query: ---------GPSSRVDEEVGTSSQSRPSQLWGMPRRSGRVVSQPDRYLGLTETQVVILFDGVEDPLSYKQAMNDVDKHQWIKVMDLEMESMYFNSVWELV
GPSSRVDE TS QS PSQ MPRRSGRVVSQP+RYLGLTETQ VI DGVEDPLSYKQAMNDVDK QW+K MDLEMESMYFN VWELV
Subjt: ---------GPSSRVDEEVGTSSQSRPSQLWGMPRRSGRVVSQPDRYLGLTETQVVILFDGVEDPLSYKQAMNDVDKHQWIKVMDLEMESMYFNSVWELV
Query: DQPEG
D PEG
Subjt: DQPEG
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| A0A5A7UYX7 Gag/pol protein | 2.7e-155 | 49.07 | Show/hide |
Query: MSSLIIALLKSECLTGENYTTWKSNLNMILVVDELRFVLTEKCPQVPARSASQSVKDAYDRWIKANDKAKVYILASLSEVLAKKHKGMVSAREIMSPLQN
M++ + +L ++ L G NY +WK+ +N++L++D+L+FVL E+CPQVPA +A+Q+V++ Y+RW K N+K + YILASLSEVLAKKH+ M++AREIM LQ
Subjt: MSSLIIALLKSECLTGENYTTWKSNLNMILVVDELRFVLTEKCPQVPARSASQSVKDAYDRWIKANDKAKVYILASLSEVLAKKHKGMVSAREIMSPLQN
Query: IFGQLSGQLRHESLKYVYNSRMKEGSSVKEHVLDLMVHFNVEDMNGAVIDKQSQ--------------------------------KTQKKKIGGKG-KA
+FGQ S Q+ H++LKY+YN+RM EG+SV+EHVL++MVHFNV +MNGAVID+ SQ K KKK GG+G KA
Subjt: IFGQLSGQLRHESLKYVYNSRMKEGSSVKEHVLDLMVHFNVEDMNGAVIDKQSQ--------------------------------KTQKKKIGGKG-KA
Query: PAAADKGKGKPKVADKGKCFHCNVDGHWKRNDPKYLVELKEKK----------------------------------GKMTKQPFTGKGYRAKKPLELIH
AA K K K A KG CFH N +GHWKRN PKYL E K+ K GKMTK+PFTGKG+RAK+PLEL+H
Subjt: PAAADKGKGKPKVADKGKCFHCNVDGHWKRNDPKYLVELKEKK----------------------------------GKMTKQPFTGKGYRAKKPLELIH
Query: SDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDYLIEHGIQSQLAQPNTPQQN---
SDLCGP+NVKAR E+EYFI+F D YSRYGY+YLM H SEAL+KFKEYK EVENAL KTIKT RSDRGGEY DL+FQ+YL+E I SQL+ P TPQQN
Subjt: SDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDYLIEHGIQSQLAQPNTPQQN---
Query: --------------------------------------------------------------------AHMLWTNPKKLEPRSRLCQFVGYPKETRGCLF
AH+L NPKKLEPRS+LC FVGYPK TRG F
Subjt: --------------------------------------------------------------------AHMLWTNPKKLEPRSRLCQFVGYPKETRGCLF
Query: YDPQENKVLVLTNTTFLEEDNMRNLKPR------------TGPSSRVDEE---------VGTSSQSRPSQLWGMPRRSGRVVSQPDRYLGLTETQVVILF
YD ++NKV VLTN TFLE+D++R KPR T PS+RV EE VG+S+++ Q PRRSGRV + P RY+ LTET VI
Subjt: YDPQENKVLVLTNTTFLEEDNMRNLKPR------------TGPSSRVDEE---------VGTSSQSRPSQLWGMPRRSGRVVSQPDRYLGLTETQVVILF
Query: DGVEDPLSYKQAMNDVDKHQWIKVMDLEMESMYFNSVWELVDQPEG
+EDPL++K+AM DVDK +WIK M+LE+ESMYFNSVW+LVDQP+G
Subjt: DGVEDPLSYKQAMNDVDKHQWIKVMDLEMESMYFNSVWELVDQPEG
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| A0A5A7VJG3 Gag/pol protein | 2.9e-149 | 47.15 | Show/hide |
Query: MSSLIIALLKSECLTGENYTTWKSNLNMILVVDELRFVLTEKCPQVPARSASQSVKDAYDRWIKANDKAKVYILASLSEVLAKKHKGMVSAREIMSPLQN
MS IIALLK + LTGENY TWKS LNMILV+ +LRFVL E+CP P + ASQSV+DAYD W KANDKA ++ILAS+S++L+KKH+ MV+AR+IM L+
Subjt: MSSLIIALLKSECLTGENYTTWKSNLNMILVVDELRFVLTEKCPQVPARSASQSVKDAYDRWIKANDKAKVYILASLSEVLAKKHKGMVSAREIMSPLQN
Query: IFGQLSGQLRHESLKYVYNSRMKEGSSVKEHVLDLMVHFNVEDMNGAVIDKQSQKTQKKKIGGKGKAPAAADKGKGKPKVADKGKCFHCNVDGHWKRNDP
+FGQ S Q++ E+ ++ R SS S+K QK+K GKG+ P A +GKGK KV KGKCFHCNVD HWK N P
Subjt: IFGQLSGQLRHESLKYVYNSRMKEGSSVKEHVLDLMVHFNVEDMNGAVIDKQSQKTQKKKIGGKGKAPAAADKGKGKPKVADKGKCFHCNVDGHWKRNDP
Query: KYLVELKEK-------------------------------------------------------------------------------------------
KYLV+ KEK
Subjt: KYLVELKEK-------------------------------------------------------------------------------------------
Query: -----------------------------------------------------------------------------------KGKMTKQPFTGKGYRAK
+GKMTK+PFTGK YRAK
Subjt: -----------------------------------------------------------------------------------KGKMTKQPFTGKGYRAK
Query: KPLELIHSDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDYLIEHGIQSQLAQPNT
+PLELIHSDLCGP+NVKAR +EYFISFID YSRYGYLYLM H EAL+KFKEYKTEVEN L K IK LRSDRGGEY DLRFQDY+IEHGIQSQL+ P T
Subjt: KPLELIHSDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDYLIEHGIQSQLAQPNT
Query: PQQNA-----------------------HMLWTNPKKLEPRSRLCQFVGYPKETRGCLFYDPQENKVLVLTNTTFLEEDNMRNLKPRT------------
PQQN W PKKLEPRSRLCQFVGYPKE RG LF+DPQEN+V V TNTTFLEED MR+ KPR+
Subjt: PQQNA-----------------------HMLWTNPKKLEPRSRLCQFVGYPKETRGCLFYDPQENKVLVLTNTTFLEEDNMRNLKPRT------------
Query: ------GPSSRVDEEVGTSSQSRPSQLWGMPRRSGRVVSQPDRYLGLTETQVVILFDGVEDPLSYKQAMNDVDKHQWIKVMDLEMESMYFNSVWELVDQP
PSSRVDE TS QS PSQ MPRRSGR+VSQP RYLGLTETQVVI DGVEDPLSYKQ MNDVDK+QW+K MDLE+ESMYFNSVWEL D
Subjt: ------GPSSRVDEEVGTSSQSRPSQLWGMPRRSGRVVSQPDRYLGLTETQVVILFDGVEDPLSYKQAMNDVDKHQWIKVMDLEMESMYFNSVWELVDQP
Query: EG
EG
Subjt: EG
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| A0A5D3BHG7 Gag/pol protein | 2.4e-156 | 49.23 | Show/hide |
Query: MSSLIIALLKSECLTGENYTTWKSNLNMILVVDELRFVLTEKCPQVPARSASQSVKDAYDRWIKANDKAKVYILASLSEVLAKKHKGMVSAREIMSPLQN
M++ + +L ++ L G NY +WK+ +N++L++D+L+FVL E+CPQVPA +A+Q+V++ Y+RW K N+K + YILASLSEVLAKKH+ M++AREIM LQ
Subjt: MSSLIIALLKSECLTGENYTTWKSNLNMILVVDELRFVLTEKCPQVPARSASQSVKDAYDRWIKANDKAKVYILASLSEVLAKKHKGMVSAREIMSPLQN
Query: IFGQLSGQLRHESLKYVYNSRMKEGSSVKEHVLDLMVHFNVEDMNGAVIDKQSQ--------------------------------KTQKKKIGGKG-KA
+FGQ S Q+ H++LKY+YN+RM EG+SV+EHVL++MVHFNV +MNGAVID+ SQ K KKK GG+G KA
Subjt: IFGQLSGQLRHESLKYVYNSRMKEGSSVKEHVLDLMVHFNVEDMNGAVIDKQSQ--------------------------------KTQKKKIGGKG-KA
Query: PAAADKGKGKPKVADKGKCFHCNVDGHWKRNDPKYLVELKEKK----------------------------------GKMTKQPFTGKGYRAKKPLELIH
AA K K K A KG CFH N +GHWKRN PKYL E K+ K GKMTK+PFTGKG+RAK+PLEL+H
Subjt: PAAADKGKGKPKVADKGKCFHCNVDGHWKRNDPKYLVELKEKK----------------------------------GKMTKQPFTGKGYRAKKPLELIH
Query: SDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDYLIEHGIQSQLAQPNTPQQN---
SDLCGP+NVKAR E+EYFI+F D YSRYGY+YLM H SEAL+KFKEYK EVENAL KTIKT RSDRGGEY DL+FQ+YL+E I SQL+ P TPQQN
Subjt: SDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDYLIEHGIQSQLAQPNTPQQN---
Query: --------------------------------------------------------------------AHMLWTNPKKLEPRSRLCQFVGYPKETRGCLF
AH+L NPKKLEPRS+LC FVGYPK TRG F
Subjt: --------------------------------------------------------------------AHMLWTNPKKLEPRSRLCQFVGYPKETRGCLF
Query: YDPQENKVLVLTNTTFLEEDNMRNLKPR------------TGPSSRVDEE---------VGTSSQSRPSQLWGMPRRSGRVVSQPDRYLGLTETQVVILF
YDP++NKV V TN TFLEED++R KPR T PS+RV EE VG+S+++ Q PRRSGRV + P RY+ LTET VI
Subjt: YDPQENKVLVLTNTTFLEEDNMRNLKPR------------TGPSSRVDEE---------VGTSSQSRPSQLWGMPRRSGRVVSQPDRYLGLTETQVVILF
Query: DGVEDPLSYKQAMNDVDKHQWIKVMDLEMESMYFNSVWELVDQPEG
+EDPL++K+AM DVDK +WIK M+LE+ESMYFNSVW+LVDQP+G
Subjt: DGVEDPLSYKQAMNDVDKHQWIKVMDLEMESMYFNSVWELVDQPEG
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| A0A5D3DZX8 Gag/pol protein | 8.4e-149 | 53.21 | Show/hide |
Query: MILVVDELRFVLTEKCPQVPARSASQSVKDAYDRWIKANDKAKVYILASLSEVLAKKHKGMVSAREIMSPLQNIFGQLSGQLRHESLKYVYNSRMKEGSS
MILV+ +LRFVL EKCP P + SQSV+DAY RW KANDKA ++ILAS+S++L+KKH+ MV AR+IM L+ +FGQ S Q++ E+ ++ R SS
Subjt: MILVVDELRFVLTEKCPQVPARSASQSVKDAYDRWIKANDKAKVYILASLSEVLAKKHKGMVSAREIMSPLQNIFGQLSGQLRHESLKYVYNSRMKEGSS
Query: VKEHVLDLMVHFNVEDMNGAVIDKQSQKTQKKKIGGKGKAPAAADKGKGKPKVADKGKCFHCNVDGHWKRNDPKYLVELKEK------------------
S+K QK+K GKGK P A + KGK KV KGKCFHC+VD HWK N PKYLV+ KEK
Subjt: VKEHVLDLMVHFNVEDMNGAVIDKQSQKTQKKKIGGKGKAPAAADKGKGKPKVADKGKCFHCNVDGHWKRNDPKYLVELKEK------------------
Query: -----------------------------------------------------------KGKMTKQPFTGKGYRAKKPLELIHSDLCGPVNVKARVEYEY
+GKMTK+PFT KGYRAK+PLELIHSDLCGP+NVKAR +EY
Subjt: -----------------------------------------------------------KGKMTKQPFTGKGYRAKKPLELIHSDLCGPVNVKARVEYEY
Query: FISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDYLIEHGIQSQLAQPNTPQQN--------------------
FISFID YSRYGYLYLM H SEAL+KFKEYK EVEN L K IK LRSD+GGEY DLRFQDY+IEHGIQSQL+ P TPQQN
Subjt: FISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDYLIEHGIQSQLAQPNTPQQN--------------------
Query: -----------------AHMLWTNPKKLEPRSRLCQFVGYPKETRGCLFYDPQENKVLVLTNTTFLEEDNMRNLKPRT------------------GPSS
+H+L TNPKKL PRSRLCQFVGYPKETRG L +DPQEN+VLV TN TFLEED+ R+ KPR+ GPSS
Subjt: -----------------AHMLWTNPKKLEPRSRLCQFVGYPKETRGCLFYDPQENKVLVLTNTTFLEEDNMRNLKPRT------------------GPSS
Query: RVDEEVGTSSQSRPSQLWGMPRRSGRVVSQPDRYLGLTETQVVILFDGVEDPLSYKQAMNDVDKHQWIKVMDLEMESMYFNSVWELVDQPEG
RVDE TS QS PSQ MPRRSGRVVSQP+RYLGLTETQVVI DGVEDPLSYKQAMNDVDK QW+K +DLEMESMYFNSVWELVD PEG
Subjt: RVDEEVGTSSQSRPSQLWGMPRRSGRVVSQPDRYLGLTETQVVILFDGVEDPLSYKQAMNDVDKHQWIKVMDLEMESMYFNSVWELVDQPEG
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 1.3e-10 | 29.51 | Show/hide |
Query: GKMTKQPFTGKGYRA--KKPLELIHSDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRF
GK + PF + K+PL ++HSD+CGP+ + YF+ F+D ++ Y YL+ + S+ F+++ + E + L D G EY
Subjt: GKMTKQPFTGKGYRA--KKPLELIHSDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRF
Query: QDYLIEHGIQSQLAQPNTPQQN
+ + ++ GI L P+TPQ N
Subjt: QDYLIEHGIQSQLAQPNTPQQN
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 9.6e-17 | 31.54 | Show/hide |
Query: GKMTKQPFTGKGYRAKKPLELIHSDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQD
GK + F R L+L++SD+CGP+ +++ +YF++FID SR ++Y++ + + F+++ VE G+ +K LRSD GGEY F++
Subjt: GKMTKQPFTGKGYRAKKPLELIHSDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQD
Query: YLIEHGIQSQLAQPNTPQQNAHMLWTNPKKLEPRSRLCQFVGYPKETRG
Y HGI+ + P TPQ N N +E + + PK G
Subjt: YLIEHGIQSQLAQPNTPQQNAHMLWTNPKKLEPRSRLCQFVGYPKETRG
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| Q12491 Transposon Ty2-B Gag-Pol polyprotein | 1.7e-05 | 28.68 | Show/hide |
Query: GKMTKQPFTGKGYRAK-----KPLELIHSDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSE--ALKKFKEYKTEVENALGKTIKTLRSDRGGEY
GK TK KG R K +P + +H+D+ GPV+ + YFISF D +R+ ++Y +H E L F ++N + ++ DRG EY
Subjt: GKMTKQPFTGKGYRAK-----KPLELIHSDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSE--ALKKFKEYKTEVENALGKTIKTLRSDRGGEY
Query: KDLRFQDYLIEHGIQSQLAQPNTPQQNAH
+ + GI + T AH
Subjt: KDLRFQDYLIEHGIQSQLAQPNTPQQNAH
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.0e-10 | 31.93 | Show/hide |
Query: KMTKQPFTGKGYRAKKPLELIHSDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDY
K K PF+ + +PLE I+SD+ + + Y Y++ F+D ++RY +LY + S+ + F +K +EN I T SD GGE+ + +Y
Subjt: KMTKQPFTGKGYRAKKPLELIHSDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDY
Query: LIEHGIQSQLAQPNTPQQN
+HGI + P+TP+ N
Subjt: LIEHGIQSQLAQPNTPQQN
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.4e-12 | 37.82 | Show/hide |
Query: KMTKQPFTGKGYRAKKPLELIHSDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDY
K K PF+ + KPLE I+SD+ + + Y Y++ F+D ++RY +LY + S+ F +K+ VEN I TL SD GGE+ LR DY
Subjt: KMTKQPFTGKGYRAKKPLELIHSDLCGPVNVKARVEYEYFISFIDVYSRYGYLYLMHHMSEALKKFKEYKTEVENALGKTIKTLRSDRGGEYKDLRFQDY
Query: LIEHGIQSQLAQPNTPQQN
L +HGI + P+TP+ N
Subjt: LIEHGIQSQLAQPNTPQQN
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