CuGenDBv2

Gene ID	Tan0002514
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ty1-copia retrotransposon protein
Genome location	LG08:3332304..3332816
RNA-Seq Expression	Tan0002514
Synteny	Tan0002514
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0048277.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

1.3e-37

52.49

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Query:  MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY----------------------------------------------------------
        MSIK S K+LPDLSKLEPLDG NYRRWSQKLLIFFEQLEVDY                                                          
Subjt:  MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY----------------------------------------------------------

Query:  ----------------KSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCEIL
                        KSAK IWSTLESRYGGDDA R+KYVVGKWLQFQM DDKP+++Q+HEYENLVANVLSEGMKMCEIL
Subjt:  ----------------KSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCEIL

KAA0051006.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

4.6e-38

53.59

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Query:  MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY----------------------------------------------------------
        MSIK S K+LPDLSKLEPLDG NYRRWSQKLLIFFEQLEVDY                                                          
Subjt:  MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY----------------------------------------------------------

Query:  ----------------KSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCEIL
                        KSAK IWSTLESRYGGDDA R+KYVVGKWLQFQM DDKPVM+Q+HEYENLVANVLSEGMKMCEIL
Subjt:  ----------------KSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCEIL

KAA0056761.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

1.8e-37

53.04

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Query:  MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY----------------------------------------------------------
        MSIK S K+LPDLSKLEPLDG NYRRWSQKLLIFFEQLEVDY                                                          
Subjt:  MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY----------------------------------------------------------

Query:  ----------------KSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCEIL
                        KSAK IWSTLESRYGGDDA R+KYVVGKWLQFQM DDKPV++Q+HEYENLVANVLSEGMKMCEIL
Subjt:  ----------------KSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCEIL

TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

4.6e-38

53.59

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Query:  MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY----------------------------------------------------------
        MSIK S K+LPDLSKLEPLDG NYRRWSQKLLIFFEQLEVDY                                                          
Subjt:  MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY----------------------------------------------------------

Query:  ----------------KSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCEIL
                        KSAK IWSTLESRYGGDDA R+KYVVGKWLQFQM DDKPVM+Q+HEYENLVANVLSEGMKMCEIL
Subjt:  ----------------KSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCEIL

TYK04957.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

1.3e-37

53.04

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Query:  MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY----------------------------------------------------------
        MSIK S K+LPDLSKLEPLDG NYRRWSQKLLIFFEQLEVDY                                                          
Subjt:  MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY----------------------------------------------------------

Query:  ----------------KSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCEIL
                        KSAK IWSTLESRYGGDDA R+KYVVGKWLQFQM DDKPV++Q+HEYENLVANVLSEGMKMCEIL
Subjt:  ----------------KSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCEIL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U214 Ty1-copia retrotransposon protein

6.5e-38

52.49

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Query:  MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY----------------------------------------------------------
        MSIK S K+LPDLSKLEPLDG NYRRWSQKLLIFFEQLEVDY                                                          
Subjt:  MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY----------------------------------------------------------

Query:  ----------------KSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCEIL
                        KSAK IWSTLESRYGGDDA R+KYVVGKWLQFQM DDKP+++Q+HEYENLVANVLSEGMKMCEIL
Subjt:  ----------------KSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCEIL

A0A5A7U9X9 Ty1-copia retrotransposon protein

2.2e-38

53.59

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Query:  MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY----------------------------------------------------------
        MSIK S K+LPDLSKLEPLDG NYRRWSQKLLIFFEQLEVDY                                                          
Subjt:  MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY----------------------------------------------------------

Query:  ----------------KSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCEIL
                        KSAK IWSTLESRYGGDDA R+KYVVGKWLQFQM DDKPVM+Q+HEYENLVANVLSEGMKMCEIL
Subjt:  ----------------KSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCEIL

A0A5D3BZH6 Ty1-copia retrotransposon protein

6.5e-38

53.04

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Query:  MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY----------------------------------------------------------
        MSIK S K+LPDLSKLEPLDG NYRRWSQKLLIFFEQLEVDY                                                          
Subjt:  MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY----------------------------------------------------------

Query:  ----------------KSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCEIL
                        KSAK IWSTLESRYGGDDA R+KYVVGKWLQFQM DDKPV++Q+HEYENLVANVLSEGMKMCEIL
Subjt:  ----------------KSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCEIL

A0A5D3BZI1 Ty1-copia retrotransposon protein

2.2e-38

53.59

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Query:  MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY----------------------------------------------------------
        MSIK S K+LPDLSKLEPLDG NYRRWSQKLLIFFEQLEVDY                                                          
Subjt:  MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY----------------------------------------------------------

Query:  ----------------KSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCEIL
                        KSAK IWSTLESRYGGDDA R+KYVVGKWLQFQM DDKPVM+Q+HEYENLVANVLSEGMKMCEIL
Subjt:  ----------------KSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCEIL

A0A5D3C5T2 Ty1-copia retrotransposon protein

8.5e-38

53.04

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Query:  MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY----------------------------------------------------------
        MSIK S K+LPDLSKLEPLDG NYRRWSQKLLIFFEQLEVDY                                                          
Subjt:  MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY----------------------------------------------------------

Query:  ----------------KSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCEIL
                        KSAK IWSTLESRYGGDDA R+KYVVGKWLQFQM DDKPV++Q+HEYENLVANVLSEGMKMCEIL
Subjt:  ----------------KSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCEIL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G00980.1 zinc knuckle (CCHC-type) family protein

2.6e-07

29.27

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Query:  YRRWSQKLLIFFEQLEVDYKSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCE
        YRR+SQK           +K AK +W  L+  Y  D++  ++  V K+++F+M++++P+++QV  +  +  +++S GM + E
Subjt:  YRRWSQKLLIFFEQLEVDYKSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCE

Sequences

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CDS sequence

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ATGTCGATCAAATCCGGGAAGGTTCTTCCAGATCTGTCCAAATTGGAGCCACTCGATGGAGCAAATTACCGTCGTTGGTCCCAGAAGCTACTGATCTTCTTCGAGCAATT
AGAGGTGGACTATAAATCTGCAAAAGTCATATGGAGTACTCTCGAATCCAGATATGGTGGTGATGATGCTAGCAGGAGAAAATACGTTGTCGGCAAATGGCTGCAGTTTC
AGATGATGGATGACAAACCGGTGATGGACCAGGTTCATGAGTATGAGAATCTGGTGGCCAATGTTCTGTCAGAAGGGATGAAAATGTGCGAAATTCTTTAG

mRNA sequence

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Protein sequence

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MSIKSGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDYKSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCEIL

Tan0002514 (gene) of Snake gourd v1 genome