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Tan0002572 (gene) of Snake gourd v1 genome

Gene IDTan0002572
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibosomal protein S24/S35, mitochondrial
Genome locationLG05:73269178..73271142
RNA-Seq ExpressionTan0002572
SyntenyTan0002572
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584340.1 hypothetical protein SDJN03_20272, partial [Cucurbita argyrosperma subsp. sororia]1.4e-5776.51Show/hide
Query:  MKRAIWRAVFNVYVRRVAVSPHLQTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFYNGDVDSLPSIFEAIL
        MKRAIW AVF    RRV++SP LQTLRSGPLL  FS   S QSRCYSSGNDKYNGL+ST+ +NKDSLVDDD+S EELKRKID FY GDV+SLP+IFEAIL
Subjt:  MKRAIWRAVFNVYVRRVAVSPHLQTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFYNGDVDSLPSIFEAIL

Query:  KRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGG-LKETDEGMEDSSDASDSEEEDRRI
        KRKLSGKHGDADD+LMKEIRQRMPG+VEDFKDEEYDSDL G L E+DE M++ S    SEEEDRR+
Subjt:  KRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGG-LKETDEGMEDSSDASDSEEEDRRI

KAG7019929.1 hypothetical protein SDJN02_18896, partial [Cucurbita argyrosperma subsp. argyrosperma]6.2e-5876.51Show/hide
Query:  MKRAIWRAVFNVYVRRVAVSPHLQTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFYNGDVDSLPSIFEAIL
        MKRAIW AVF    RRV++SP LQTLRSGPLL  FS   S QSRCYSSGNDKYNGL+STT +NKDSLVDDD+S EELKRKID FY GD++SLP+IFEAIL
Subjt:  MKRAIWRAVFNVYVRRVAVSPHLQTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFYNGDVDSLPSIFEAIL

Query:  KRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGG-LKETDEGMEDSSDASDSEEEDRRI
        KRKLSGKHGDADD+LMKEIRQRMPG+VEDFKDEEYDSDL G L E+DE M++ S    SEEEDRR+
Subjt:  KRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGG-LKETDEGMEDSSDASDSEEEDRRI

XP_022924024.1 uncharacterized protein LOC111431572 [Cucurbita moschata]6.2e-5877.11Show/hide
Query:  MKRAIWRAVFNVYVRRVAVSPHLQTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFYNGDVDSLPSIFEAIL
        MKRAIW AVF    RRV++SP LQTLRSGPLL  FS   S QSRCYSSGNDKYNGL+STT +NKDSLVDDDVS EELKRKID FY GDV+SLP+IFEAIL
Subjt:  MKRAIWRAVFNVYVRRVAVSPHLQTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFYNGDVDSLPSIFEAIL

Query:  KRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGG-LKETDEGMEDSSDASDSEEEDRRI
        KRKLSGKHGDADD+LMKEIRQR+PG+VEDFKDEEYDSDL G L E+DE M++ S    SEEEDRR+
Subjt:  KRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGG-LKETDEGMEDSSDASDSEEEDRRI

XP_023000953.1 uncharacterized protein LOC111495236 [Cucurbita maxima]1.7e-5577.44Show/hide
Query:  MKRAIWRAVFNVYVRRVAVSPHLQTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFYNGDVDSLPSIFEAIL
        MKRAIW AVF    RRV++ P LQTLRSGPLL  FS   S QSRCYSSGNDKYNGL+STT +NKDSLVDD VS EELKRKID FY GDV+SLP+IFEAIL
Subjt:  MKRAIWRAVFNVYVRRVAVSPHLQTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFYNGDVDSLPSIFEAIL

Query:  KRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGG-LKETDEGMEDSSDASDSEEEDR
        KRKLSGKHGDADD+LMKEI QRMPG+VEDFKDEEYDSDL G L ETDE ME+ S    SEEEDR
Subjt:  KRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGG-LKETDEGMEDSSDASDSEEEDR

XP_023519890.1 uncharacterized protein LOC111783221 [Cucurbita pepo subsp. pepo]2.8e-5877.71Show/hide
Query:  MKRAIWRAVFNVYVRRVAVSPHLQTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFYNGDVDSLPSIFEAIL
        MKRAIW AVF V  RRV++SP LQTLRSGPLL  FS   + QSRCYS+GNDKYNGL+STT +NKDSLVDDDVS EELKRKID FY GDV+SLP+IFEAIL
Subjt:  MKRAIWRAVFNVYVRRVAVSPHLQTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFYNGDVDSLPSIFEAIL

Query:  KRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGG-LKETDEGMEDSSDASDSEEEDRRI
        KRKLSGKHGDADD+LMKEIRQRMPG+VEDFKDEEYDSDL G L ETDE ME+      SEEEDRR+
Subjt:  KRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGG-LKETDEGMEDSSDASDSEEEDRRI

TrEMBL top hitse value%identityAlignment
A0A1S3CEX3 uncharacterized protein LOC1034999295.4e-4770.48Show/hide
Query:  MKRAIWRAVFNVYVRRVAVSPHLQTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFY-NGDVDSLPSIFEAI
        MKRA+W AVFNV  R ++VSP L+T RS PLL  FS    F  RCYSSGNDKYN L+ST  +NKDSLVDDDVSTEELKRKID FY  GD DSLP IFEAI
Subjt:  MKRAIWRAVFNVYVRRVAVSPHLQTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFY-NGDVDSLPSIFEAI

Query:  LKRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGGLKETDEGMEDSSDASDSEEEDRRI
        LKRKLSGKH DADD+LMKEIRQRMPG++EDFK EEYDS+L     TD+       ASDSEEED+RI
Subjt:  LKRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGGLKETDEGMEDSSDASDSEEEDRRI

A0A5D3BIA4 Uncharacterized protein5.4e-4770.48Show/hide
Query:  MKRAIWRAVFNVYVRRVAVSPHLQTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFY-NGDVDSLPSIFEAI
        MKRA+W AVFNV  R ++VSP L+T RS PLL  FS    F  RCYSSGNDKYN L+ST  +NKDSLVDDDVSTEELKRKID FY  GD DSLP IFEAI
Subjt:  MKRAIWRAVFNVYVRRVAVSPHLQTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFY-NGDVDSLPSIFEAI

Query:  LKRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGGLKETDEGMEDSSDASDSEEEDRRI
        LKRKLSGKH DADD+LMKEIRQRMPG++EDFK EEYDS+L     TD+       ASDSEEED+RI
Subjt:  LKRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGGLKETDEGMEDSSDASDSEEEDRRI

A0A6J1C5J6 uncharacterized protein LOC1110085965.3e-5573.49Show/hide
Query:  MKRAIWRAVFNVYVRRVAVSPHLQTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFYNGDVDSLPSIFEAIL
        M RA+WRAVFNVY R V++SP LQT  SG    RF+ L S Q RCYSS NDKYNGL+STTNQN  S+VDDDVSTEELKRKID FY GDV+SLPSIFEAIL
Subjt:  MKRAIWRAVFNVYVRRVAVSPHLQTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFYNGDVDSLPSIFEAIL

Query:  KRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGGLKETDEGMEDSS---DASDSEEEDR
        KRKLSGKH  ADD+LMKEIRQRMPGQ+EDFKD+E  SDL G +ETDE ++D S   D+SDSEEEDR
Subjt:  KRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGGLKETDEGMEDSS---DASDSEEEDR

A0A6J1E804 uncharacterized protein LOC1114315723.0e-5877.11Show/hide
Query:  MKRAIWRAVFNVYVRRVAVSPHLQTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFYNGDVDSLPSIFEAIL
        MKRAIW AVF    RRV++SP LQTLRSGPLL  FS   S QSRCYSSGNDKYNGL+STT +NKDSLVDDDVS EELKRKID FY GDV+SLP+IFEAIL
Subjt:  MKRAIWRAVFNVYVRRVAVSPHLQTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFYNGDVDSLPSIFEAIL

Query:  KRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGG-LKETDEGMEDSSDASDSEEEDRRI
        KRKLSGKHGDADD+LMKEIRQR+PG+VEDFKDEEYDSDL G L E+DE M++ S    SEEEDRR+
Subjt:  KRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGG-LKETDEGMEDSSDASDSEEEDRRI

A0A6J1KP40 uncharacterized protein LOC1114952368.2e-5677.44Show/hide
Query:  MKRAIWRAVFNVYVRRVAVSPHLQTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFYNGDVDSLPSIFEAIL
        MKRAIW AVF    RRV++ P LQTLRSGPLL  FS   S QSRCYSSGNDKYNGL+STT +NKDSLVDD VS EELKRKID FY GDV+SLP+IFEAIL
Subjt:  MKRAIWRAVFNVYVRRVAVSPHLQTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFYNGDVDSLPSIFEAIL

Query:  KRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGG-LKETDEGMEDSSDASDSEEEDR
        KRKLSGKHGDADD+LMKEI QRMPG+VEDFKDEEYDSDL G L ETDE ME+ S    SEEEDR
Subjt:  KRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGG-LKETDEGMEDSSDASDSEEEDR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G73770.1 FUNCTIONS IN: molecular_function unknown3.7e-0837.61Show/hide
Query:  SSTTNQNKDSLVDDDVSTEELKRKIDNFY-NGDVDSLPSIFEAILKRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGGLKETDEGMEDSSDA
        SS ++ ++    ++ +S EELK++I +F  +G+ D++P +FEA++ RKLSGKH D+DD++M  +R+         K ++ DSD+       +G  DSSD 
Subjt:  SSTTNQNKDSLVDDDVSTEELKRKIDNFY-NGDVDSLPSIFEAILKRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGGLKETDEGMEDSSDA

Query:  SDSEEEDRR
        SD E +D R
Subjt:  SDSEEEDRR

AT1G73770.2 FUNCTIONS IN: molecular_function unknown3.7e-0837.61Show/hide
Query:  SSTTNQNKDSLVDDDVSTEELKRKIDNFY-NGDVDSLPSIFEAILKRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGGLKETDEGMEDSSDA
        SS ++ ++    ++ +S EELK++I +F  +G+ D++P +FEA++ RKLSGKH D+DD++M  +R+         K ++ DSD+       +G  DSSD 
Subjt:  SSTTNQNKDSLVDDDVSTEELKRKIDNFY-NGDVDSLPSIFEAILKRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGGLKETDEGMEDSSDA

Query:  SDSEEEDRR
        SD E +D R
Subjt:  SDSEEEDRR

AT3G18240.1 Ribosomal protein S24/S35, mitochondrial2.7e-1133.12Show/hide
Query:  RRVAVSPHL--QTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGL----SSTTNQNKDSLVDDDVSTEELKRKIDNFYN-GDVDSLPSIFEAILKRKLSGK
        RR+ +SP +  Q   + P L   +   + + R +SS + + +      S T +  K  LV +DVS +ELK +I+ ++N G+ D+LP + EA+L+R+L  K
Subjt:  RRVAVSPHL--QTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGL----SSTTNQNKDSLVDDDVSTEELKRKIDNFYN-GDVDSLPSIFEAILKRKLSGK

Query:  HGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGGLKETDEGMEDSSDASDSEEEDRR
        H + DD+L+++I + +P + +D KDE+++SD      TDE +ED  ++ +   E  R
Subjt:  HGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGGLKETDEGMEDSSDASDSEEEDRR

AT3G18240.2 Ribosomal protein S24/S35, mitochondrial2.7e-1133.12Show/hide
Query:  RRVAVSPHL--QTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGL----SSTTNQNKDSLVDDDVSTEELKRKIDNFYN-GDVDSLPSIFEAILKRKLSGK
        RR+ +SP +  Q   + P L   +   + + R +SS + + +      S T +  K  LV +DVS +ELK +I+ ++N G+ D+LP + EA+L+R+L  K
Subjt:  RRVAVSPHL--QTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGL----SSTTNQNKDSLVDDDVSTEELKRKIDNFYN-GDVDSLPSIFEAILKRKLSGK

Query:  HGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGGLKETDEGMEDSSDASDSEEEDRR
        H + DD+L+++I + +P + +D KDE+++SD      TDE +ED  ++ +   E  R
Subjt:  HGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGGLKETDEGMEDSSDASDSEEEDRR

AT4G21460.1 Ribosomal protein S24/S35, mitochondrial1.6e-1132.16Show/hide
Query:  MKRAIWRAVFNVYVRRVAVSPHLQ------TLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFYN-GDVDSLP
        M+ A++R   ++  RR+ +S  +       T  + P   +F F +S      ++  +     S T + +K  LV +DVS +ELK +ID  +N G+ D+LP
Subjt:  MKRAIWRAVFNVYVRRVAVSPHLQ------TLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFYN-GDVDSLP

Query:  SIFEAILKRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGGLKETDEGMEDSSDASDSEEEDRR
         + EA+L+R+L  KH + DD+LM++I + +P + +D KDE+++SD      TDE +ED  ++ +   E  R
Subjt:  SIFEAILKRKLSGKHGDADDDLMKEIRQRMPGQVEDFKDEEYDSDLGGLKETDEGMEDSSDASDSEEEDRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACGAGCTATATGGAGAGCCGTATTCAATGTTTATGTTCGGAGGGTCGCCGTCTCTCCTCACCTACAAACCTTGCGCTCAGGTCCCTTATTGGTTCGATTTTCCTT
TTTGACTTCGTTCCAATCGCGATGTTACTCGTCCGGGAATGACAAGTACAATGGATTGAGCTCAACCACGAATCAGAACAAGGATTCTCTCGTCGACGATGATGTCAGTA
CCGAAGAGCTAAAGAGGAAGATAGATAACTTCTACAATGGGGATGTTGATTCATTACCATCAATTTTTGAAGCAATTTTGAAGAGAAAGCTATCGGGTAAACATGGAGAT
GCCGATGATGATCTGATGAAAGAAATTCGCCAGCGAATGCCGGGACAAGTTGAAGATTTTAAAGATGAAGAATATGATTCAGATTTAGGTGGGTTGAAGGAAACTGATGA
AGGAATGGAGGATTCCAGTGATGCTAGTGATTCAGAGGAAGAAGATAGAAGAATATAA
mRNA sequenceShow/hide mRNA sequence
ACTGTAAAGAAACGCCATGAAACGAGCTATATGGAGAGCCGTATTCAATGTTTATGTTCGGAGGGTCGCCGTCTCTCCTCACCTACAAACCTTGCGCTCAGGTCCCTTAT
TGGTTCGATTTTCCTTTTTGACTTCGTTCCAATCGCGATGTTACTCGTCCGGGAATGACAAGTACAATGGATTGAGCTCAACCACGAATCAGAACAAGGATTCTCTCGTC
GACGATGATGTCAGTACCGAAGAGCTAAAGAGGAAGATAGATAACTTCTACAATGGGGATGTTGATTCATTACCATCAATTTTTGAAGCAATTTTGAAGAGAAAGCTATC
GGGTAAACATGGAGATGCCGATGATGATCTGATGAAAGAAATTCGCCAGCGAATGCCGGGACAAGTTGAAGATTTTAAAGATGAAGAATATGATTCAGATTTAGGTGGGT
TGAAGGAAACTGATGAAGGAATGGAGGATTCCAGTGATGCTAGTGATTCAGAGGAAGAAGATAGAAGAATATAAGTTATGTTCATAACGTGAGTTCTATAGTCCATACTT
GTTTAATTTAGACGAACATATGAGGTGATAACGTGAGTTCTATAGTCCA
Protein sequenceShow/hide protein sequence
MKRAIWRAVFNVYVRRVAVSPHLQTLRSGPLLVRFSFLTSFQSRCYSSGNDKYNGLSSTTNQNKDSLVDDDVSTEELKRKIDNFYNGDVDSLPSIFEAILKRKLSGKHGD
ADDDLMKEIRQRMPGQVEDFKDEEYDSDLGGLKETDEGMEDSSDASDSEEEDRRI