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Tan0002593 (gene) of Snake gourd v1 genome

Gene IDTan0002593
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSOSS complex subunit B homolog
Genome locationLG06:7679171..7679326
RNA-Seq ExpressionTan0002593
SyntenyTan0002593
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0010212 - response to ionizing radiation (biological process)
GO:0070876 - SOSS complex (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150258.1 SOSS complex subunit B homolog [Momordica charantia]1.1e-1382.61Show/hide
Query:  MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPPNH
        +GE NMVFVETPNM +I WVPDT DSKKYVKE VLSPYSRIFPPN+
Subjt:  MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPPNH
XP_022961520.1 SOSS complex subunit B homolog [Cucurbita moschata]6.5e-1486.36Show/hide
Query:  MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPP
        +GE NMVFVETPNM +IHWVPDTT+SKKYVKE VLSPYSRIFPP
Subjt:  MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPP
XP_022968811.1 SOSS complex subunit B homolog [Cucurbita maxima]4.2e-1381.82Show/hide
Query:  MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPP
        +GE NMVFVETPNM +IHWVPDT++SKKYVKE V+SPYSRIFPP
Subjt:  MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPP
XP_023515959.1 SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo]6.5e-1486.36Show/hide
Query:  MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPP
        +GE NMVFVETPNM +IHWVPDTT+SKKYVKE VLSPYSRIFPP
Subjt:  MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPP
XP_038878334.1 SOSS complex subunit B homolog [Benincasa hispida]1.2e-1281.82Show/hide
Query:  MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPP
        +GE  MVFVETPNM +IHWVPDTT+S KYVKE VLSPYSRIFPP
Subjt:  MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPP
TrEMBL top hitse value%identityAlignment
A0A1S3BPN4 SOSS complex subunit B homolog2.9e-1279.55Show/hide
Query:  MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPP
        +GE  MVFVETPNM +IHWVPDT +S KYVKE VLSPYSRIFPP
Subjt:  MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPP
A0A5D3CIR3 SOSS complex subunit B-like protein2.9e-1279.55Show/hide
Query:  MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPP
        +GE  MVFVETPNM +IHWVPDT +S KYVKE VLSPYSRIFPP
Subjt:  MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPP
A0A6J1D803 SOSS complex subunit B homolog5.4e-1482.61Show/hide
Query:  MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPPNH
        +GE NMVFVETPNM +I WVPDT DSKKYVKE VLSPYSRIFPPN+
Subjt:  MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPPNH
A0A6J1HAL0 SOSS complex subunit B homolog3.1e-1486.36Show/hide
Query:  MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPP
        +GE NMVFVETPNM +IHWVPDTT+SKKYVKE VLSPYSRIFPP
Subjt:  MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPP
A0A6J1HZ66 SOSS complex subunit B homolog2.0e-1381.82Show/hide
Query:  MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPP
        +GE NMVFVETPNM +IHWVPDT++SKKYVKE V+SPYSRIFPP
Subjt:  MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G63690.1 Nucleic acid-binding, OB-fold-like protein2.7e-1054.55Show/hide
Query:  MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPP
        MGE  + FVETPN+ +I W+PD  + K+Y++  V+S YSRIFPP
Subjt:  MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAGTCCAACATGGTGTTTGTAGAAACACCAAATATGTGCAAGATCCATTGGGTTCCCGACACGACTGACTCGAAGAAGTATGTGAAAGAATGTGTTCTATCGCC
CTATTCTCGTATCTTTCCACCAAATCATTGGTATGGCTTCTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGAGTCCAACATGGTGTTTGTAGAAACACCAAATATGTGCAAGATCCATTGGGTTCCCGACACGACTGACTCGAAGAAGTATGTGAAAGAATGTGTTCTATCGCC
CTATTCTCGTATCTTTCCACCAAATCATTGGTATGGCTTCTTCTAG
Protein sequenceShow/hide protein sequence
MGESNMVFVETPNMCKIHWVPDTTDSKKYVKECVLSPYSRIFPPNHWYGFF