CuGenDBv2

Gene ID	Tan0002615
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Complex1_LYR domain-containing protein
Genome location	LG11:6767980..6771042
RNA-Seq Expression	Tan0002615
Synteny	Tan0002615
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004144434.1 uncharacterized protein LOC101204721 [Cucumis sativus]

4.8e-46

87.27

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Query:  MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        M+SEALQVAKVYR+LLKAVK H+GKE+SKKHFVDYVAQ FRDKS LS+PHSIQQ+IKLARDYTFLLNSVHHQKDLLFSYNIA+DRS+EMKR+LGKSAASV
Subjt:  MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQP
        GL LPE YQP
Subjt:  GLRLPEAYQP

XP_022134018.1 uncharacterized protein LOC111006395 [Momordica charantia]

1.6e-46

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Query:  MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        MSSEALQVA+VYR+LLKAVKNHIGKE+SKKHFVDYVAQ FR++S LSEPHS+QQKIKLA DY  LLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
Subjt:  MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQP
        GLRLPEAYQP
Subjt:  GLRLPEAYQP

XP_022933120.1 uncharacterized protein LOC111439884 [Cucurbita moschata]

5.6e-47

89.09

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Query:  MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        M+SEALQVAKVYR+LLKAVK HIGKE++KKHFVDYVAQ FR+KSTLS+PHS+QQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRS+EMKRILGKSAASV
Subjt:  MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQP
        GL+LPE YQP
Subjt:  GLRLPEAYQP

XP_022967927.1 uncharacterized protein LOC111467294 [Cucurbita maxima]

1.1e-47

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Query:  MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        M+SEALQVAKVYR+LLKAVKNHIGKE++KKHFVDYVAQ FR+KSTLS+PHS+QQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRS+EMKRILGKSAASV
Subjt:  MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQP
        GL+LPE YQP
Subjt:  GLRLPEAYQP

XP_038889144.1 uncharacterized protein LOC120079034 [Benincasa hispida]

2.8e-46

88.18

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Query:  MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        M+SEALQVAKVYR+LLKAVKNHIGKE+SKKHFVDYVAQ FRDK+ LS+PHS+QQ+IKLA DYTFLLNSVHHQKDLLFSYNIA+DRSEEMKRILGKSAASV
Subjt:  MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQP
        GL+LPE YQP
Subjt:  GLRLPEAYQP

TrEMBL top hits

e value

%identity

Alignment

A0A067DNY7 Uncharacterized protein

8.5e-41

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Query:  MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        MSSE +Q AKVYR+LLKAVKNHIGKED K HF++YV Q FR  S LS+P SI+QKIKLA DYTFLLNSVHH KDLLFSYNIA+DRS+EMKRILGKSAASV
Subjt:  MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQP
        GL+LPE YQP
Subjt:  GLRLPEAYQP

A0A0A0L9E2 Uncharacterized protein

2.3e-46

87.27

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Query:  MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        M+SEALQVAKVYR+LLKAVK H+GKE+SKKHFVDYVAQ FRDKS LS+PHSIQQ+IKLARDYTFLLNSVHHQKDLLFSYNIA+DRS+EMKR+LGKSAASV
Subjt:  MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQP
        GL LPE YQP
Subjt:  GLRLPEAYQP

A0A6J1C0V5 uncharacterized protein LOC111006395

7.9e-47

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Query:  MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        MSSEALQVA+VYR+LLKAVKNHIGKE+SKKHFVDYVAQ FR++S LSEPHS+QQKIKLA DY  LLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
Subjt:  MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQP
        GLRLPEAYQP
Subjt:  GLRLPEAYQP

A0A6J1EY92 uncharacterized protein LOC111439884

2.7e-47

89.09

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Query:  MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        M+SEALQVAKVYR+LLKAVK HIGKE++KKHFVDYVAQ FR+KSTLS+PHS+QQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRS+EMKRILGKSAASV
Subjt:  MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQP
        GL+LPE YQP
Subjt:  GLRLPEAYQP

A0A6J1HS51 uncharacterized protein LOC111467294

5.5e-48

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Query:  MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        M+SEALQVAKVYR+LLKAVKNHIGKE++KKHFVDYVAQ FR+KSTLS+PHS+QQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRS+EMKRILGKSAASV
Subjt:  MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQP
        GL+LPE YQP
Subjt:  GLRLPEAYQP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G51960.1 CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

6.5e-33

62.73

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Query:  MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        MS E +  A+VYR LLKAV  H+GKED K HF+D+V Q FR  +         +KI LAR+YT+LLNS+H  KDLLFSYNIA+DR+EEMKR+L KSAASV
Subjt:  MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQP
        GLRLPE Y+P
Subjt:  GLRLPEAYQP

Sequences

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CDS sequence

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ATGAGTTCAGAAGCCCTCCAGGTAGCTAAGGTTTACCGCAAGCTTCTCAAAGCTGTAAAGAACCACATCGGAAAGGAGGATAGCAAGAAGCATTTTGTGGACTATGTGGC
CCAAAATTTCAGGGATAAAAGCACACTTTCTGAACCCCATTCTATTCAACAGAAAATCAAGCTTGCTCGCGATTACACATTTCTACTTAACAGCGTGCACCATCAAAAGG
ACTTGTTGTTCTCGTACAACATTGCTATTGATAGATCAGAGGAAATGAAGCGAATATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTAGACTTCCCGAAGCCTATCAACCC
TGA

mRNA sequence

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TTTAGATAACTAAATTGAGGAGGGGCGGAAGTAATCCACATTCTTACAATTTCTGATTCTGATTCTGTTCTGTCGCGAAACGCAGCGCCAGCCATCTTCCTTTGTTAATT
TATTGGGCCCTAGTGGTTTGGTTAATTCCTAACTTTCACGATTTCATTTCTGGTCTACTCTCTGCCGCCATTGCTAGCACTTAATGGAATTGTGAAGTTTTTGAGTGACA
AAAAAGACACTTGAATTGAAGACTTCAAAGTTTTGAAAATGAGTTCAGAAGCCCTCCAGGTAGCTAAGGTTTACCGCAAGCTTCTCAAAGCTGTAAAGAACCACATCGGA
AAGGAGGATAGCAAGAAGCATTTTGTGGACTATGTGGCCCAAAATTTCAGGGATAAAAGCACACTTTCTGAACCCCATTCTATTCAACAGAAAATCAAGCTTGCTCGCGA
TTACACATTTCTACTTAACAGCGTGCACCATCAAAAGGACTTGTTGTTCTCGTACAACATTGCTATTGATAGATCAGAGGAAATGAAGCGAATATTGGGCAAGTCTGCAG
CAAGTGTGGGGCTTAGACTTCCCGAAGCCTATCAACCCTGATGCCCTGTGGTTGTTTTAATAAGAAGAAGCACTTTCCCCTCCTAAGCAAAGAAGAATAAGCACTTCGAT
TAGCTGCCAGCTTGCCAGATTTAATTATTCTTGACCCTTTTCTACCATCTGATACTTCAATTTTATGTGCATTGAAAGAGGCAAGGGCAGATTAGAAGGTTTTTATATAT
AATGAGATTTTTCCTCTTATTAGGTGAATTTGGCAGCAATTTAGTGTGTTATTTGTTTCACTTTCAATTAATGTAAACTTTATAATGTGACAAAAGTGCTGTATAATTTT
GATCGCTCTTGCCCAACTTTCTTAAATAATGTTGAAACTATGTAGGGCTTTGAGTATCGGTGGTGATTTTCAAATAGGGTAAATTTTAAAAAATACCTCTAAAC

Protein sequence

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MSSEALQVAKVYRKLLKAVKNHIGKEDSKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASVGLRLPEAYQP

Tan0002615 (gene) of Snake gourd v1 genome