CuGenDBv2

Gene ID	Tan0002624
Organism	Trichosanthes anguina (Snake gourd v1)
Description	histone H4
Genome location	LG05:2700333..2702756
RNA-Seq Expression	Tan0002624
Synteny	Tan0002624
Gene Ontology terms	GO:0006352 - DNA-templated transcription, initiation (biological process) GO:0000786 - nucleosome (cellular component) GO:0005654 - nucleoplasm (cellular component) GO:0003677 - DNA binding (molecular function) GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domains	IPR001951 - Histone H4 IPR009072 - Histone-fold IPR019809 - Histone H4, conserved site IPR035425 - CENP-T/Histone H4, histone fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6485895.1 hypothetical protein ZIOFF_054462 [Zingiber officinale]

1.0e-46

63.13

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL  
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS

Query:  FLLVRSSGFAGYLLLC------IDSDRTPSRCL---KASRSV--LLCIS--ICWYQH------SSVHLYGEFRVYDFFT-VNKLAG--VCNIRRCWWI
               GF G L+        +D  R   R +   K  R V  +LC +  I W  H      S   LY E     +FT + +LAG  +C++R+  W+
Subjt:  FLLVRSSGFAGYLLLC------IDSDRTPSRCL---KASRSV--LLCIS--ICWYQH------SSVHLYGEFRVYDFFT-VNKLAG--VCNIRRCWWI

KAG6570719.1 hypothetical protein SDJN03_29634, partial [Cucurbita argyrosperma subsp. sororia]

3.6e-47

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL  
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS

Query:  FLLVRSSGFAGYLLLCIDSD
        F      GFAG LL  +DSD
Subjt:  FLLVRSSGFAGYLLLCIDSD

KAG7010565.1 hypothetical protein SDJN02_27359, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.6e-47

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL  
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS

Query:  FLLVRSSGFAGYLLLCIDSD
        F      GFAG LL  +DSD
Subjt:  FLLVRSSGFAGYLLLCIDSD

XP_017624872.1 PREDICTED: uncharacterized protein LOC108468504 [Gossypium arboreum]

4.2e-48

69.05

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL  
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS

Query:  FLLVRSSGFAGYLLLCIDSDRTPSRCLKASRSVLLCISICWYQHSS--VHLYGEFRVYDFFTVNKLAG
               GF GY  + + S+  P+R  K++ S        WY+ SS  + L   F+  +F +++K++G
Subjt:  FLLVRSSGFAGYLLLCIDSDRTPSRCLKASRSVLLCISICWYQHSS--VHLYGEFRVYDFFTVNKLAG

XP_024466490.1 uncharacterized protein LOC7458619 [Populus trichocarpa]

5.2e-46

74.83

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL  
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS

Query:  FLLVRSSGFAGYLLLCIDSDRT-----------PSRCLKASRSVLLC
               GF GY ++ + + R              RCLKA+ S ++C
Subjt:  FLLVRSSGFAGYLLLCIDSDRT-----------PSRCLKASRSVLLC

TrEMBL top hits

e value

%identity

Alignment

A0A251UP18 Histone H4

7.3e-46

83.33

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL  
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS

Query:  FLLVRSSGFAGYLLLCIDSDRTPSRC
        F      G  GY  + +D+  T   C
Subjt:  FLLVRSSGFAGYLLLCIDSDRTPSRC

A0A2P5X2K8 Histone H4

2.1e-45

91.07

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL  
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS

Query:  FLLVRSSGFAGY
        F +++ S   GY
Subjt:  FLLVRSSGFAGY

A0A341BYL9 LOW QUALITY PROTEIN: uncharacterized protein LOC112404117

2.8e-45

86.55

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTL  
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS

Query:  FLLVRSSGFAGYLLLCIDS
        F     +   G+L LC DS
Subjt:  FLLVRSSGFAGYLLLCIDS

A0A699GSB8 Histone H4

9.5e-46

89.47

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL  
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS

Query:  FLLVRSSGFAGYLL
        F   + SG   Y++
Subjt:  FLLVRSSGFAGYLL

A0A6P4NPD3 Histone H4

2.0e-48

69.05

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL  
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS

Query:  FLLVRSSGFAGYLLLCIDSDRTPSRCLKASRSVLLCISICWYQHSS--VHLYGEFRVYDFFTVNKLAG
               GF GY  + + S+  P+R  K++ S        WY+ SS  + L   F+  +F +++K++G
Subjt:  FLLVRSSGFAGYLLLCIDSDRTPSRCLKASRSVLLCISICWYQHSS--VHLYGEFRVYDFFTVNKLAG

SwissProt top hits

e value

%identity

Alignment

P59259 Histone H4

6.3e-47

98.02

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL  
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS

Query:  F
        F
Subjt:  F

P62785 Histone H4 variant TH011

6.3e-47

98.02

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL  
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS

Query:  F
        F
Subjt:  F

Q6LAF3 Histone H4

6.3e-47

98.02

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL  
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS

Query:  F
        F
Subjt:  F

Q6PMI5 Histone H4

6.3e-47

98.02

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL  
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS

Query:  F
        F
Subjt:  F

Q6WZ83 Histone H4

6.3e-47

98.02

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL  
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS

Query:  F
        F
Subjt:  F

Arabidopsis top hits

e value

%identity

Alignment

AT1G07660.1 Histone superfamily protein

4.5e-48

98.02

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL  
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS

Query:  F
        F
Subjt:  F

AT1G07820.1 Histone superfamily protein

4.5e-48

98.02

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL  
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS

Query:  F
        F
Subjt:  F

AT1G07820.2 Histone superfamily protein

4.5e-48

98.02

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL  
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS

Query:  F
        F
Subjt:  F

AT2G28740.1 histone H4

4.5e-48

98.02

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL  
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS

Query:  F
        F
Subjt:  F

AT3G45930.1 Histone superfamily protein

4.5e-48

98.02

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL  
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRS

Query:  F
        F
Subjt:  F

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCAGGACGAGGAAAGGGAGGTAAGGGATTGGGAAAAGGAGGAGCAAAGCGTCACAGGAAAGTGTTGAGAGACAACATTCAGGGCATTACCAAGCCTGCAATTCGCCG
TTTGGCTCGTCGAGGCGGTGTCAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGAGTTTTGAAGATCTTCCTTGAGAATGTGATTCGTGATGCTGTTACCTACA
CAGAGCACGCTAGGAGGAAGACGGTGACTGCCATGGATGTGGTTTATGCATTGAAAAGGCAGGGAAGGACTTTGCGTTCTTTTTTGTTGGTGAGGTCTTCAGGATTTGCA
GGTTATTTGCTATTGTGCATTGATTCAGATAGGACTCCTTCAAGGTGTCTTAAGGCGAGCAGGTCTGTGCTGCTTTGTATCTCAATTTGTTGGTACCAACATTCATCTGT
TCATCTGTATGGTGAATTTCGTGTTTATGACTTTTTTACAGTTAACAAATTGGCTGGTGTATGCAATATAAGAAGGTGCTGGTGGATTCAATATCTTGCAATGGCGAAGC
TGCAGGGATTTGGTTTTGATAGAGACCGGTTTTTTCAGAACTTCTCCAGCTTGTTGAGCTAG

mRNA sequence

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Protein sequence

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MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLRSFLLVRSSGFA
GYLLLCIDSDRTPSRCLKASRSVLLCISICWYQHSSVHLYGEFRVYDFFTVNKLAGVCNIRRCWWIQYLAMAKLQGFGFDRDRFFQNFSSLLS

Tan0002624 (gene) of Snake gourd v1 genome