; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0002657 (gene) of Snake gourd v1 genome

Gene IDTan0002657
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationLG09:60979395..60981759
RNA-Seq ExpressionTan0002657
SyntenyTan0002657
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.3e-2247.76Show/hide
Query:  MAAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF-------------------------------------VSQFAQDNAV
        M+AM      N D NWYPDSGATNHLT+SLSN+S+ SEY G NQ+   NG+G                                      VSQFA+DN V
Subjt:  MAAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF-------------------------------------VSQFAQDNAV

Query:  FFEFHPYFCFVKDLATGQTLLQGTLHKGLYKFDL
        FFEFHP  C+VKDL TGQ LLQG L+ GLYKF +
Subjt:  FFEFHPYFCFVKDLATGQTLLQGTLHKGLYKFDL
KAA0068024.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.9e-2043.26Show/hide
Query:  YNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF-------------------------------------VSQFAQDNAVFFEFHPYFC
        ++ D NWYPDSGATNHLT+SLSN+S  SEY G NQ+   NG+G                                      VS FA+DN VFFEFHP  C
Subjt:  YNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF-------------------------------------VSQFAQDNAVFFEFHPYFC

Query:  FVKDLATGQTLLQGTLHKGLYKFDLSADSPSISPKAPPTNS
        +VKDL  GQ LLQG L+ GLYKF +      +    P T S
Subjt:  FVKDLATGQTLLQGTLHKGLYKFDLSADSPSISPKAPPTNS
RVW44519.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.6e-2042.96Show/hide
Query:  MAAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF-------------------------------------VSQFAQDNAV
        M AM  TP   Q+C W+PDSGATNH+T+ L N++  +EY GN+++ +GNG G                                      VSQFA+DN V
Subjt:  MAAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF-------------------------------------VSQFAQDNAV

Query:  FFEFHPYFCFVKDLATGQTLLQGTLHKGLYKFDLS
        +FEFHP  CFVKD +    LLQG LHKGLY+F+LS
Subjt:  FFEFHPYFCFVKDLATGQTLLQGTLHKGLYKFDLS
RVW60229.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.6e-2042.96Show/hide
Query:  MAAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF-------------------------------------VSQFAQDNAV
        M AM  TP   Q+C W+PDSGATNH+T+ L N++  +EY GN+++ +GNG G                                      VSQFA+DN V
Subjt:  MAAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF-------------------------------------VSQFAQDNAV

Query:  FFEFHPYFCFVKDLATGQTLLQGTLHKGLYKFDLS
        +FEFHP  CFVKD +    LLQG LHKGLY+F+LS
Subjt:  FFEFHPYFCFVKDLATGQTLLQGTLHKGLYKFDLS
TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.3e-2247.76Show/hide
Query:  MAAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF-------------------------------------VSQFAQDNAV
        M+AM      N D NWYPDSGATNHLT+SLSN+S+ SEY G NQ+   NG+G                                      VSQFA+DN V
Subjt:  MAAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF-------------------------------------VSQFAQDNAV

Query:  FFEFHPYFCFVKDLATGQTLLQGTLHKGLYKFDL
        FFEFHP  C+VKDL TGQ LLQG L+ GLYKF +
Subjt:  FFEFHPYFCFVKDLATGQTLLQGTLHKGLYKFDL
TrEMBL top hitse value%identityAlignment
A0A438EA49 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-2042.96Show/hide
Query:  MAAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF-------------------------------------VSQFAQDNAV
        M AM  TP   Q+C W+PDSGATNH+T+ L N++  +EY GN+++ +GNG G                                      VSQFA+DN V
Subjt:  MAAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF-------------------------------------VSQFAQDNAV

Query:  FFEFHPYFCFVKDLATGQTLLQGTLHKGLYKFDLS
        +FEFHP  CFVKD +    LLQG LHKGLY+F+LS
Subjt:  FFEFHPYFCFVKDLATGQTLLQGTLHKGLYKFDLS
A0A438FJP6 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-2042.96Show/hide
Query:  MAAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF-------------------------------------VSQFAQDNAV
        M AM  TP   Q+C W+PDSGATNH+T+ L N++  +EY GN+++ +GNG G                                      VSQFA+DN V
Subjt:  MAAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF-------------------------------------VSQFAQDNAV

Query:  FFEFHPYFCFVKDLATGQTLLQGTLHKGLYKFDLS
        +FEFHP  CFVKD +    LLQG LHKGLY+F+LS
Subjt:  FFEFHPYFCFVKDLATGQTLLQGTLHKGLYKFDLS
A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-946.1e-2347.76Show/hide
Query:  MAAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF-------------------------------------VSQFAQDNAV
        M+AM      N D NWYPDSGATNHLT+SLSN+S+ SEY G NQ+   NG+G                                      VSQFA+DN V
Subjt:  MAAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF-------------------------------------VSQFAQDNAV

Query:  FFEFHPYFCFVKDLATGQTLLQGTLHKGLYKFDL
        FFEFHP  C+VKDL TGQ LLQG L+ GLYKF +
Subjt:  FFEFHPYFCFVKDLATGQTLLQGTLHKGLYKFDL
A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-946.1e-2347.76Show/hide
Query:  MAAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF-------------------------------------VSQFAQDNAV
        M+AM      N D NWYPDSGATNHLT+SLSN+S+ SEY G NQ+   NG+G                                      VSQFA+DN V
Subjt:  MAAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF-------------------------------------VSQFAQDNAV

Query:  FFEFHPYFCFVKDLATGQTLLQGTLHKGLYKFDL
        FFEFHP  C+VKDL TGQ LLQG L+ GLYKF +
Subjt:  FFEFHPYFCFVKDLATGQTLLQGTLHKGLYKFDL
A0A803Q5I3 Uncharacterized protein7.5e-2153.1Show/hide
Query:  MAAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF-----VSQFAQDNAVFFEFHPYFCFVKDLATGQTLLQGTLHKGLYKF
        M++   TP   QD NWYPDSGA++HLT   SN+  ++ Y  N  V VGNGAG      VS+FAQDN V FEFHP+FC VKD  T + LL G +  GLYKF
Subjt:  MAAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF-----VSQFAQDNAVFFEFHPYFCFVKDLATGQTLLQGTLHKGLYKF

Query:  DLSADSPSISPKA
        D S  S   SP A
Subjt:  DLSADSPSISPKA
SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE15.9e-0729.33Show/hide
Query:  AAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF----------------------------------VSQFAQDNAVFFEF
        A +A   PY+ + NW  DSGAT+H+T+  +N+S+   Y G + V V +G+                                    V +    N V  EF
Subjt:  AAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF----------------------------------VSQFAQDNAVFFEF

Query:  HPYFCFVKDLATGQTLLQGTLHKGLYKFDLSADSP---SISPKAPPTNSS
         P    VKDL TG  LLQG     LY++ +++  P     SP +  T+SS
Subjt:  HPYFCFVKDLATGQTLLQGTLHKGLYKFDLSADSP---SISPKAPPTNSS
Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.0e-0629.33Show/hide
Query:  AAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF----------------------------------VSQFAQDNAVFFEF
        A +A   PYN + NW  DSGAT+H+T+  +N+S    Y G + V + +G+                                    V +    N V  EF
Subjt:  AAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGF----------------------------------VSQFAQDNAVFFEF

Query:  HPYFCFVKDLATGQTLLQGTLHKGLYKFDLSADSPSISPKAPPTNSSVIS
         P    VKDL TG  LLQG     LY++ + A S ++S  A P + +  S
Subjt:  HPYFCFVKDLATGQTLLQGTLHKGLYKFDLSADSPSISPKAPPTNSSVIS
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCCATGGCTACCACACCTCCTTACAATCAGGATTGCAATTGGTATCCTGACTCTGGCGCTACAAATCATCTCACTAATAGCCTAAGTAACATGTCTGTGAGTTC
TGAATACTTAGGCAACAACCAGGTACAGGTTGGTAATGGAGCAGGTTTCGTTAGTCAGTTTGCACAAGATAATGCTGTTTTCTTTGAATTTCATCCATATTTTTGTTTTG
TGAAGGATCTAGCAACTGGACAAACGCTGCTCCAAGGGACTCTCCATAAGGGACTTTACAAATTCGATCTCTCCGCTGATTCACCATCCATCTCACCCAAAGCTCCTCCA
ACCAACTCCTCTGTTATCTCACCTACATGTCAGGTTTCCACTGTAAGAGAATGCTTATATTTCTACATTGATTGCATTATTAAATGCCTCATTTTCTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCCATGGCTACCACACCTCCTTACAATCAGGATTGCAATTGGTATCCTGACTCTGGCGCTACAAATCATCTCACTAATAGCCTAAGTAACATGTCTGTGAGTTC
TGAATACTTAGGCAACAACCAGGTACAGGTTGGTAATGGAGCAGGTTTCGTTAGTCAGTTTGCACAAGATAATGCTGTTTTCTTTGAATTTCATCCATATTTTTGTTTTG
TGAAGGATCTAGCAACTGGACAAACGCTGCTCCAAGGGACTCTCCATAAGGGACTTTACAAATTCGATCTCTCCGCTGATTCACCATCCATCTCACCCAAAGCTCCTCCA
ACCAACTCCTCTGTTATCTCACCTACATGTCAGGTTTCCACTGTAAGAGAATGCTTATATTTCTACATTGATTGCATTATTAAATGCCTCATTTTCTCTTAA
Protein sequenceShow/hide protein sequence
MAAMATTPPYNQDCNWYPDSGATNHLTNSLSNMSVSSEYLGNNQVQVGNGAGFVSQFAQDNAVFFEFHPYFCFVKDLATGQTLLQGTLHKGLYKFDLSADSPSISPKAPP
TNSSVISPTCQVSTVRECLYFYIDCIIKCLIFS