; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0002719 (gene) of Snake gourd v1 genome

Gene IDTan0002719
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionreplication protein A 14 kDa subunit B-like
Genome locationLG04:6101194..6103107
RNA-Seq ExpressionTan0002719
SyntenyTan0002719
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601223.1 Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia]1.2e-4689.62Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE
        MDTSNPAVF NGELLNMH GRKIRAVVQVIQ DGGVVTGKSTD Q LTVHGLPTVPLM+F+EVVGIAEGNKIIN E+W DFGNTFD QSYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        FRSLFL
Subjt:  FRSLFL

XP_008446755.1 PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo]1.6e-4382.08Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE
        MDTSNPAVFVNGELL+MH GRKIRAVVQVIQ DGG+VTGKSTD Q LT+HGLPTVP M+F+EVVGIA+ NK IN E+W DFG TFDT+SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        FRSLF+
Subjt:  FRSLFL

XP_022988152.1 replication protein A 14 kDa subunit B-like [Cucurbita maxima]1.9e-4486.79Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE
        MDTSNPAVF NGELLNMH GRKIRAVVQVIQ D GVVTGKSTD Q LTVHGLPTVPLM+F+EVVGIAEGNKIIN E+W DFG  FD QSYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        FRSLFL
Subjt:  FRSLFL

XP_023539791.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]3.0e-4586.79Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE
        MDTSNPAVF NGELLN+H GRKIRAVVQVIQ DGGVVTGKSTD Q LTVHGLPTVPLM+F+EVVGIAEGNKIIN E+W DFG TFD QSYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        FRSLF+
Subjt:  FRSLFL

XP_038893019.1 replication protein A 14 kDa subunit B-like [Benincasa hispida]1.1e-4484.91Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE
        MDTSNPAVFVNGELL+MH GRKIRAVVQVIQ DGG+VTGKSTD Q LT+ GLPTVPLM+F+EVVGIAE NKIIN E+W DFG TFDTQSYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        FRSLF+
Subjt:  FRSLFL

TrEMBL top hitse value%identityAlignment
A0A0A0KRF2 Uncharacterized protein3.9e-4382.08Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE
        MDTSNPAVFVNGELL+MH GRKIRAVVQVIQ DGG+VTGKSTD Q LT+HGLPTVP M+F+EVVGIAE NK I  E+W DFG TFDT SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        FRSLF+
Subjt:  FRSLFL

A0A1S3BGM8 replication protein A 14 kDa subunit B-like7.9e-4482.08Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE
        MDTSNPAVFVNGELL+MH GRKIRAVVQVIQ DGG+VTGKSTD Q LT+HGLPTVP M+F+EVVGIA+ NK IN E+W DFG TFDT+SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        FRSLF+
Subjt:  FRSLFL

A0A5A7SU42 Replication protein A 14 kDa subunit B-like7.9e-4482.08Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE
        MDTSNPAVFVNGELL+MH GRKIRAVVQVIQ DGG+VTGKSTD Q LT+HGLPTVP M+F+EVVGIA+ NK IN E+W DFG TFDT+SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        FRSLF+
Subjt:  FRSLFL

A0A6J1D9X1 replication protein A 14 kDa subunit B-like1.7e-4180.19Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE
        MDTSNPAVFVN ELL +HIGRKIRAV QV + DGGVVTGKSTD Q+LTVHGLP VPLM+F+EV+GIAE NKIIN E+  DFGNTFD QSYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        F+S+FL
Subjt:  FRSLFL

A0A6J1JC99 replication protein A 14 kDa subunit B-like9.4e-4586.79Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE
        MDTSNPAVF NGELLNMH GRKIRAVVQVIQ D GVVTGKSTD Q LTVHGLPTVPLM+F+EVVGIAEGNKIIN E+W DFG  FD QSYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        FRSLFL
Subjt:  FRSLFL

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B2.0e-3159.43Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE
        MDTS+PA FVNG LL  +IG+K+RAV+QVI+ D G V GKSTD Q + V G P  PL +++EV+GIAE +  I AE W +FG++FD Q+YN+LC+LANGE
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        FR LF+
Subjt:  FRSLFL

Q9LXK1 Replication protein A 14 kDa subunit A1.2e-2856.07Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHG-LPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANG
        MDTS+P+ FVNG LL   IG+K+R V+QV   + G V GKSTD   + V G  P  PL +++EV+GIAE +  I AE W +FGNTFDTQ+YN+LC+LANG
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHG-LPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANG

Query:  EFRSLFL
        EF+ LF+
Subjt:  EFRSLFL

Q9SDK9 Replication protein A 14 kDa subunit1.1e-2650.94Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE
        MDTS PA FVNGE+L M +GR++R VVQ  + +GG++ G+STDG  LT+ G    P+  ++E++GIAE N+ I AE   DFG  FD   +N LC+LANG+
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
         + LFL
Subjt:  FRSLFL

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein8.4e-3056.07Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHG-LPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANG
        MDTS+P+ FVNG LL   IG+K+R V+QV   + G V GKSTD   + V G  P  PL +++EV+GIAE +  I AE W +FGNTFDTQ+YN+LC+LANG
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHG-LPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANG

Query:  EFRSLFL
        EF+ LF+
Subjt:  EFRSLFL

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein8.4e-3056.07Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHG-LPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANG
        MDTS+P+ FVNG LL   IG+K+R V+QV   + G V GKSTD   + V G  P  PL +++EV+GIAE +  I AE W +FGNTFDTQ+YN+LC+LANG
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHG-LPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANG

Query:  EFRSLFL
        EF+ LF+
Subjt:  EFRSLFL

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein1.4e-3259.43Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE
        MDTS+PA FVNG LL  +IG+K+RAV+QVI+ D G V GKSTD Q + V G P  PL +++EV+GIAE +  I AE W +FG++FD Q+YN+LC+LANGE
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        FR LF+
Subjt:  FRSLFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACTTCAAACCCTGCAGTGTTTGTCAATGGTGAGTTATTGAACATGCATATTGGAAGAAAGATTCGAGCAGTTGTTCAAGTTATCCAAGGTGATGGTGGAGTCGT
TACAGGAAAATCTACAGATGGACAAGATTTGACTGTTCATGGCTTGCCCACAGTCCCTCTCATGAGCTTTATAGAAGTAGTTGGTATTGCTGAGGGCAACAAGATCATCA
ATGCTGAAAATTGGATCGACTTTGGAAACACATTTGATACTCAATCTTACAATCAGCTGTGCCAACTTGCAAATGGGGAATTCAGAAGTTTATTTCTTTAA
mRNA sequenceShow/hide mRNA sequence
TGAAGAAGCGTTGTCTCACAGGTACGCGTTAGAAATCTTTCTGAAGCAGTAAACTTATATGTGATTGGGACTTTCTGTTCCTTAGTTCACCGGGATATTTACAAGGATCA
GTACTTCTTTCAATGATATGGATACTTCAAACCCTGCAGTGTTTGTCAATGGTGAGTTATTGAACATGCATATTGGAAGAAAGATTCGAGCAGTTGTTCAAGTTATCCAA
GGTGATGGTGGAGTCGTTACAGGAAAATCTACAGATGGACAAGATTTGACTGTTCATGGCTTGCCCACAGTCCCTCTCATGAGCTTTATAGAAGTAGTTGGTATTGCTGA
GGGCAACAAGATCATCAATGCTGAAAATTGGATCGACTTTGGAAACACATTTGATACTCAATCTTACAATCAGCTGTGCCAACTTGCAAATGGGGAATTCAGAAGTTTAT
TTCTTTAAGGATTTGTAGCTACGCAATGAGAAGAGGTAGAGGTATAATTTGTTCTGTGATTTTGAATCTTCTATGCTTGTAACTTATGTGGCGTGTTAACTTGTTAAACT
GCTGAAAATCTATTTAAAGCAACCATGATGTTTGTTTTGGCTATTATATAAGCCGCCAGATGCACAGAAGTTTTATATTTTGATGTACTAAGCTGGGAATGAAGTTCGGA
ATTTCATGGACTTTGGGGTTCCATTTCTCATCTTCCCAGTAGCCCAGGTACTTGATTGGCACTTTTTTCATTAGCAGTTCATTTGATCTGAAGCACTTTTTTCAGTAGCA
GTTCTTAGCTTTTAGCTGTACACAATTCAACC
Protein sequenceShow/hide protein sequence
MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQGDGGVVTGKSTDGQDLTVHGLPTVPLMSFIEVVGIAEGNKIINAENWIDFGNTFDTQSYNQLCQLANGEFRSLFL