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Tan0002727 (gene) of Snake gourd v1 genome

Gene IDTan0002727
OrganismTrichosanthes anguina (Snake gourd v1)
Description60S acidic ribosomal protein P1-like
Genome locationLG07:9021291..9021926
RNA-Seq ExpressionTan0002727
SyntenyTan0002727
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0006414 - translational elongation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0030295 - protein kinase activator activity (molecular function)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsIPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022138163.1 60S acidic ribosomal protein P1-like isoform X1 [Momordica charantia]1.8e-3276.36Show/hide
Query:  ELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEVMEDS
        ELACTYAALILHDD I+VTAEKI+TLV AAGLTVESYWPSLFAKL+S RNIDDLILNVGSAAA+AP++ A+  S++A A  A A AP PVEKKEE +E+S
Subjt:  ELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEVMEDS

Query:  EEDMVFGLFD
        E+D+VFGLFD
Subjt:  EEDMVFGLFD

XP_022138164.1 60S acidic ribosomal protein P1-like isoform X2 [Momordica charantia]1.5e-3477.19Show/hide
Query:  MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEV
        MSTSELACTYAALILHDD I+VTAEKI+TLV AAGLTVESYWPSLFAKL+S RNIDDLILNVGSAAA+AP++ A+  S++A A  A A AP PVEKKEE 
Subjt:  MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEV

Query:  MEDSEEDMVFGLFD
        +E+SE+D+VFGLFD
Subjt:  MEDSEEDMVFGLFD

XP_022886929.1 60S acidic ribosomal protein P1-like [Olea europaea var. sylvestris]4.7e-2868.7Show/hide
Query:  MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTA-ASAGNAAAAAPTPVEKKEE
        MS+ E ACTYA LILHDDGI +TAEKISTLV AA + VESYWPSLFAKL   RNI+DLI+NVG+  AAA V  AAP   A A AG AAAAAP   EK EE
Subjt:  MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTA-ASAGNAAAAAPTPVEKKEE

Query:  VMEDSEEDMVFGLFD
          E+S+EDM FGLFD
Subjt:  VMEDSEEDMVFGLFD

XP_030935261.1 60S acidic ribosomal protein P1 [Quercus lobata]3.6e-2866.96Show/hide
Query:  MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEV
        MST ELACTYA+L+LHDDGI +T+EKI+TLV AAG++VESYWPSLFAKLA  R+IDDLILN GS  AAAPV  +AP     + G  AAAAP   EKKEEV
Subjt:  MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEV

Query:  MEDSEE-DMVFGLFD
         E+S++ D+ FGLFD
Subjt:  MEDSEE-DMVFGLFD

XP_031391458.1 60S acidic ribosomal protein P1-like [Punica granatum]9.4e-2966.67Show/hide
Query:  MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEV
        MST E+ACTYA+LILHDDGI +TAEKI++LV AA + VESYWPSLFAKLA  RN+DDL++NVGS   AAPV AAAP    A+ G AAAA P   EKKEE 
Subjt:  MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEV

Query:  MEDSEEDMVFGLFD
         E+S++DM F LFD
Subjt:  MEDSEEDMVFGLFD

TrEMBL top hitse value%identityAlignment
A0A218X3W3 60S acidic ribosomal protein P1-like4.5e-2966.67Show/hide
Query:  MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEV
        MST E+ACTYA+LILHDDGI +TAEKI++LV AA + VESYWPSLFAKLA  RN+DDL++NVGS   AAPV AAAP    A+ G AAAA P   EKKEE 
Subjt:  MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEV

Query:  MEDSEEDMVFGLFD
         E+S++DM F LFD
Subjt:  MEDSEEDMVFGLFD

A0A5B7C569 Putative 60S acidic ribosomal protein P1 isoform X44.5e-2969.3Show/hide
Query:  MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEV
        MS  ELACTYA LILHDDGI VTAEKI+ LV AA + VESYWPSLFAKLA  RNI+DLI+NVGS    APV  AAP    A  G AAAAAP P EKKEE 
Subjt:  MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEV

Query:  MEDSEEDMVFGLFD
         E+S+EDM F LFD
Subjt:  MEDSEEDMVFGLFD

A0A6J1C9A3 60S acidic ribosomal protein P1-like isoform X27.2e-3577.19Show/hide
Query:  MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEV
        MSTSELACTYAALILHDD I+VTAEKI+TLV AAGLTVESYWPSLFAKL+S RNIDDLILNVGSAAA+AP++ A+  S++A A  A A AP PVEKKEE 
Subjt:  MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEV

Query:  MEDSEEDMVFGLFD
        +E+SE+D+VFGLFD
Subjt:  MEDSEEDMVFGLFD

A0A6J1CC92 60S acidic ribosomal protein P1-like isoform X18.8e-3376.36Show/hide
Query:  ELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEVMEDS
        ELACTYAALILHDD I+VTAEKI+TLV AAGLTVESYWPSLFAKL+S RNIDDLILNVGSAAA+AP++ A+  S++A A  A A AP PVEKKEE +E+S
Subjt:  ELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEVMEDS

Query:  EEDMVFGLFD
        E+D+VFGLFD
Subjt:  EEDMVFGLFD

A0A7N2MH30 Uncharacterized protein1.7e-2866.96Show/hide
Query:  MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEV
        MST ELACTYA+L+LHDDGI +T+EKI+TLV AAG++VESYWPSLFAKLA  R+IDDLILN GS  AAAPV  +AP     + G  AAAAP   EKKEEV
Subjt:  MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEV

Query:  MEDSEE-DMVFGLFD
         E+S++ D+ FGLFD
Subjt:  MEDSEE-DMVFGLFD

SwissProt top hitse value%identityAlignment
O23095 60S acidic ribosomal protein P1-21.0e-2558.97Show/hide
Query:  MST-SELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGS--AAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKK
        MST  ELAC+YA +IL D+GI +T++KI+TLV AAG+ +ESYWP LFAK+A  RN+ DLI+NVG+      APV+AAAP    A+AG AAAAAP   EKK
Subjt:  MST-SELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGS--AAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKK

Query:  EEVMEDSEEDMVFGLFD
        +E  E+S+ D+ FGLFD
Subjt:  EEVMEDSEEDMVFGLFD

P29763 60S acidic ribosomal protein P17.2e-2460.53Show/hide
Query:  MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEV
        MSTSELACTYAALILHDDG+ +TA+ I+T+  AAG+ VE YWP+LFAKL + +++DDLI NVG+   AAP  AAAP   AA    AA AAP   EKKE  
Subjt:  MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEV

Query:  MEDSEEDMVFGLFD
            EEDM F LFD
Subjt:  MEDSEEDMVFGLFD

P52855 60S acidic ribosomal protein P19.7e-2963.16Show/hide
Query:  MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEV
        M++ ELAC YAALIL DDGI +TAEKI+T+V AA + VESYWP+LFAKL   RN++DLIL+VGS   AAPV AAAP     + G AAAAAP   EKKEE 
Subjt:  MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEV

Query:  MEDSEEDMVFGLFD
         E+S++DM F LFD
Subjt:  MEDSEEDMVFGLFD

Q8LCW9 60S acidic ribosomal protein P1-17.2e-2456.9Show/hide
Query:  MST-SELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGS-AAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKE
        MST  ELAC+YA +IL D+GI +TA+KI+TLV AAG+++ESYWP LFAK+A  RN+ DLI+NVG+     APV AAAP    A+ G AAAA     +KK+
Subjt:  MST-SELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGS-AAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKE

Query:  EVMEDSEEDMVFGLFD
        E  E+S+ D+ FGLFD
Subjt:  EVMEDSEEDMVFGLFD

Q8LEQ0 60S acidic ribosomal protein P1-36.5e-2559.83Show/hide
Query:  MST-SELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGS-AAAAAPVTAAAPLSTAASAGNAAAAAPTPVE-KK
        MST  ELAC+YA +IL D+GI +TA+KI+TLV AAG+T+ESYWP LFAK+A  RN+ DLI+NVG+     APV AAAP    A+ G AAAAAP   E KK
Subjt:  MST-SELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGS-AAAAAPVTAAAPLSTAASAGNAAAAAPTPVE-KK

Query:  EEVMEDSEEDMVFGLFD
        +E  E+S+ D+ FGLFD
Subjt:  EEVMEDSEEDMVFGLFD

Arabidopsis top hitse value%identityAlignment
AT4G00810.1 60S acidic ribosomal protein family7.2e-2758.97Show/hide
Query:  MST-SELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGS--AAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKK
        MST  ELAC+YA +IL D+GI +T++KI+TLV AAG+ +ESYWP LFAK+A  RN+ DLI+NVG+      APV+AAAP    A+AG AAAAAP   EKK
Subjt:  MST-SELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGS--AAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKK

Query:  EEVMEDSEEDMVFGLFD
        +E  E+S+ D+ FGLFD
Subjt:  EEVMEDSEEDMVFGLFD

AT4G00810.2 60S acidic ribosomal protein family7.2e-2758.97Show/hide
Query:  MST-SELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGS--AAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKK
        MST  ELAC+YA +IL D+GI +T++KI+TLV AAG+ +ESYWP LFAK+A  RN+ DLI+NVG+      APV+AAAP    A+AG AAAAAP   EKK
Subjt:  MST-SELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGS--AAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKK

Query:  EEVMEDSEEDMVFGLFD
        +E  E+S+ D+ FGLFD
Subjt:  EEVMEDSEEDMVFGLFD

AT5G24510.1 60S acidic ribosomal protein family4.2e-2759.66Show/hide
Query:  MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGS--AAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKE
        MSTSELACTYAALILHDDGI +TAE IS LV  A + VESYWPSLFAKL   +NIDDLI+NVG+     A PVT AAP         A+ +   P EKK 
Subjt:  MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGS--AAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKE

Query:  E---VMEDSEEDMVFGLFD
        E   + E+SE+DM+ GLFD
Subjt:  E---VMEDSEEDMVFGLFD

AT5G47700.1 60S acidic ribosomal protein family4.6e-2659.83Show/hide
Query:  MST-SELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGS-AAAAAPVTAAAPLSTAASAGNAAAAAPTPVE-KK
        MST  ELAC+YA +IL D+GI +TA+KI+TLV AAG+T+ESYWP LFAK+A  RN+ DLI+NVG+     APV AAAP    A+ G AAAAAP   E KK
Subjt:  MST-SELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGS-AAAAAPVTAAAPLSTAASAGNAAAAAPTPVE-KK

Query:  EEVMEDSEEDMVFGLFD
        +E  E+S+ D+ FGLFD
Subjt:  EEVMEDSEEDMVFGLFD

AT5G47700.2 60S acidic ribosomal protein family4.6e-2659.83Show/hide
Query:  MST-SELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGS-AAAAAPVTAAAPLSTAASAGNAAAAAPTPVE-KK
        MST  ELAC+YA +IL D+GI +TA+KI+TLV AAG+T+ESYWP LFAK+A  RN+ DLI+NVG+     APV AAAP    A+ G AAAAAP   E KK
Subjt:  MST-SELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGS-AAAAAPVTAAAPLSTAASAGNAAAAAPTPVE-KK

Query:  EEVMEDSEEDMVFGLFD
        +E  E+S+ D+ FGLFD
Subjt:  EEVMEDSEEDMVFGLFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACCAGTGAACTCGCTTGCACTTACGCCGCCTTGATTCTTCATGACGACGGCATCACCGTCACGGCGGAAAAGATTTCCACATTGGTGACGGCTGCCGGCCTCAC
CGTCGAATCGTACTGGCCCTCTCTTTTCGCTAAGTTGGCCTCAGCAAGGAACATCGACGATCTCATTCTCAACGTCGGATCTGCTGCTGCTGCTGCTCCCGTTACTGCGG
CTGCTCCACTCTCCACTGCAGCCTCCGCCGGCAATGCTGCTGCTGCCGCTCCCACGCCTGTCGAGAAGAAGGAAGAGGTCATGGAAGACAGCGAGGAAGACATGGTCTTC
GGTTTGTTTGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTACCAGTGAACTCGCTTGCACTTACGCCGCCTTGATTCTTCATGACGACGGCATCACCGTCACGGCGGAAAAGATTTCCACATTGGTGACGGCTGCCGGCCTCAC
CGTCGAATCGTACTGGCCCTCTCTTTTCGCTAAGTTGGCCTCAGCAAGGAACATCGACGATCTCATTCTCAACGTCGGATCTGCTGCTGCTGCTGCTCCCGTTACTGCGG
CTGCTCCACTCTCCACTGCAGCCTCCGCCGGCAATGCTGCTGCTGCCGCTCCCACGCCTGTCGAGAAGAAGGAAGAGGTCATGGAAGACAGCGAGGAAGACATGGTCTTC
GGTTTGTTTGATTAG
Protein sequenceShow/hide protein sequence
MSTSELACTYAALILHDDGITVTAEKISTLVTAAGLTVESYWPSLFAKLASARNIDDLILNVGSAAAAAPVTAAAPLSTAASAGNAAAAAPTPVEKKEEVMEDSEEDMVF
GLFD