; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0002757 (gene) of Snake gourd v1 genome

Gene IDTan0002757
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGypsy-like retrotransposase
Genome locationLG05:75727445..75730550
RNA-Seq ExpressionTan0002757
SyntenyTan0002757
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051585.1 uncharacterized protein E6C27_scaffold174G001280 [Cucumis melo var. makuwa]1.5e-3566.39Show/hide
Query:  SKSSTNSANEKVPNEEKSSNLPVLRYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTKITKQEIRNSKVDNAKMAFPERRTKDGFDPKAYKLLS
        S++STN+A   +  +EK+SN P+LRY+PLSRRKKGESPF E  + LK G++E+LKESF TPLTKITKQEI   K+D  + + P+RRTKDGFDPKAYKL++
Subjt:  SKSSTNSANEKVPNEEKSSNLPVLRYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTKITKQEIRNSKVDNAKMAFPERRTKDGFDPKAYKLLS

Query:  NAGYDFTTHTTFKSLKIFE
         AGYDFTTHT FKSLKI+E
Subjt:  NAGYDFTTHTTFKSLKIFE

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.8e-3465.55Show/hide
Query:  SKSSTNSANEKVPNEEKSSNLPVLRYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTKITKQEIRNSKVDNAKMAFPERRTKDGFDPKAYKLLS
        S++ST++A   +  +EK+SN P+LRY+PLSRRKKGESPF E  + LK GD+E+LKESF TPLTKITKQEI   K+D  + + P+RRTKDGFDPKAYK ++
Subjt:  SKSSTNSANEKVPNEEKSSNLPVLRYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTKITKQEIRNSKVDNAKMAFPERRTKDGFDPKAYKLLS

Query:  NAGYDFTTHTTFKSLKIFE
         AGYDFTTHT FKSLKI E
Subjt:  NAGYDFTTHTTFKSLKIFE

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.7e-0643.02Show/hide
Query:  GPITRSRSREIQPEESQTPVIANKILRRMTESAQVDATIAENLVFGKITFTSLQPSETSNPDVMSVMMTDAGISEERMAEFEKKIN
        GPITRSRS+ I  E+ Q   +A  IL+++ ES +    I EN ++     +S +  + ++PDVMSVMM D    E  MAE E+KIN
Subjt:  GPITRSRSREIQPEESQTPVIANKILRRMTESAQVDATIAENLVFGKITFTSLQPSETSNPDVMSVMMTDAGISEERMAEFEKKIN

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.4e-3464.71Show/hide
Query:  SKSSTNSANEKVPNEEKSSNLPVLRYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTKITKQEIRNSKVDNAKMAFPERRTKDGFDPKAYKLLS
        S++ST++A   +  +EK+SN P+LRY+PLSRRKKGESPF E S+ LK GD+E+L+ESF TPLTKITKQE   +K D  + + P+RRTKDGFDPKAYKL++
Subjt:  SKSSTNSANEKVPNEEKSSNLPVLRYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTKITKQEIRNSKVDNAKMAFPERRTKDGFDPKAYKLLS

Query:  NAGYDFTTHTTFKSLKIFE
         AGYDFTTH  FKSLKI E
Subjt:  NAGYDFTTHTTFKSLKIFE

TYK21493.1 uncharacterized protein E5676_scaffold305G00300 [Cucumis melo var. makuwa]2.9e-3435.74Show/hide
Query:  HPVEKCFVLKELILKLAKERKIELDLD-----EPVEIWLQREFP-NTSYDQPKHTENEDEGWTLNQK---------------------------------
        H V+KCFVLKELIL+L +E+KIELDL+     EP+ +   +E     S ++ +  E +DEGWT+++                                  
Subjt:  HPVEKCFVLKELILKLAKERKIELDLD-----EPVEIWLQREFP-NTSYDQPKHTENEDEGWTLNQK---------------------------------

Query:  -----------------------------------------HIKKESIEEVDACEVKISKSSTN----SANEKVPNE-----------------------
                                                 ++K ++I EV   E+ +     N    S   K P++                       
Subjt:  -----------------------------------------HIKKESIEEVDACEVKISKSSTN----SANEKVPNE-----------------------

Query:  -EKSSNLPVLRYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTKITKQEIRNSKVDNAKMAFPERRTKDGFDPKAYKLLSNAGYDFTTHTTFKS
         EK+SN P+LRY+PLSRRKKGESPF E  + LK GD+++LKESF   LTKITKQE   +K+D  K + P+R+TKDGFDPKAYKL++ AGYDFT HT FKS
Subjt:  -EKSSNLPVLRYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTKITKQEIRNSKVDNAKMAFPERRTKDGFDPKAYKLLSNAGYDFTTHTTFKS

Query:  LKIFE
        LKI E
Subjt:  LKIFE

XP_008456446.1 PREDICTED: uncharacterized protein LOC103496389 [Cucumis melo]1.9e-4641.36Show/hide
Query:  GPITRSRSREIQPEESQTPVIANKILRRMTESAQVDATIAENLVFGKITFTSLQPSETSNPDVMSVMMTDAGISEERMAEFEKKINIHPVEKCFVLKELI
        GPITRSRS+ I  E+ Q   +   IL+++ ES +    I +N ++      S    + ++PDVMSVMM D    E+ + +F +++               
Subjt:  GPITRSRSREIQPEESQTPVIANKILRRMTESAQVDATIAENLVFGKITFTSLQPSETSNPDVMSVMMTDAGISEERMAEFEKKINIHPVEKCFVLKELI

Query:  LKLAKERKIELDLD-EPVEIW--LQREFPNTSYDQPKHTENEDEGWTLNQKH-------IKKESIEEVDACEVKISKSSTNSANEKVPNEEKSSNLPVLR
               K   DL+ E ++ W  L++EF N  Y   +  E     ++  + H       +K +S  EV + EV IS++ST++A   +  +EK+SN P+LR
Subjt:  LKLAKERKIELDLD-EPVEIW--LQREFPNTSYDQPKHTENEDEGWTLNQKH-------IKKESIEEVDACEVKISKSSTNSANEKVPNEEKSSNLPVLR

Query:  YIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTKITKQEIRNSKVDNAKMAFPERRTKDGFDPKAYKLLSNAGYDFTTHTTFKSLKIFEG
        Y+PLSRRKKGESPF E S+ LK GD+E+L+ESF TPLTKITKQE   +K D  + + P+RRTKDGFDPKAYKL++ AGYDFTTH  FK+ +  EG
Subjt:  YIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTKITKQEIRNSKVDNAKMAFPERRTKDGFDPKAYKLLSNAGYDFTTHTTFKSLKIFEG

TrEMBL top hitse value%identityAlignment
A0A1S3C4J2 uncharacterized protein LOC1034963899.3e-4741.36Show/hide
Query:  GPITRSRSREIQPEESQTPVIANKILRRMTESAQVDATIAENLVFGKITFTSLQPSETSNPDVMSVMMTDAGISEERMAEFEKKINIHPVEKCFVLKELI
        GPITRSRS+ I  E+ Q   +   IL+++ ES +    I +N ++      S    + ++PDVMSVMM D    E+ + +F +++               
Subjt:  GPITRSRSREIQPEESQTPVIANKILRRMTESAQVDATIAENLVFGKITFTSLQPSETSNPDVMSVMMTDAGISEERMAEFEKKINIHPVEKCFVLKELI

Query:  LKLAKERKIELDLD-EPVEIW--LQREFPNTSYDQPKHTENEDEGWTLNQKH-------IKKESIEEVDACEVKISKSSTNSANEKVPNEEKSSNLPVLR
               K   DL+ E ++ W  L++EF N  Y   +  E     ++  + H       +K +S  EV + EV IS++ST++A   +  +EK+SN P+LR
Subjt:  LKLAKERKIELDLD-EPVEIW--LQREFPNTSYDQPKHTENEDEGWTLNQKH-------IKKESIEEVDACEVKISKSSTNSANEKVPNEEKSSNLPVLR

Query:  YIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTKITKQEIRNSKVDNAKMAFPERRTKDGFDPKAYKLLSNAGYDFTTHTTFKSLKIFEG
        Y+PLSRRKKGESPF E S+ LK GD+E+L+ESF TPLTKITKQE   +K D  + + P+RRTKDGFDPKAYKL++ AGYDFTTH  FK+ +  EG
Subjt:  YIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTKITKQEIRNSKVDNAKMAFPERRTKDGFDPKAYKLLSNAGYDFTTHTTFKSLKIFEG

A0A5A7UD46 Uncharacterized protein7.4e-3666.39Show/hide
Query:  SKSSTNSANEKVPNEEKSSNLPVLRYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTKITKQEIRNSKVDNAKMAFPERRTKDGFDPKAYKLLS
        S++STN+A   +  +EK+SN P+LRY+PLSRRKKGESPF E  + LK G++E+LKESF TPLTKITKQEI   K+D  + + P+RRTKDGFDPKAYKL++
Subjt:  SKSSTNSANEKVPNEEKSSNLPVLRYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTKITKQEIRNSKVDNAKMAFPERRTKDGFDPKAYKLLS

Query:  NAGYDFTTHTTFKSLKIFE
         AGYDFTTHT FKSLKI+E
Subjt:  NAGYDFTTHTTFKSLKIFE

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.8e-3465.55Show/hide
Query:  SKSSTNSANEKVPNEEKSSNLPVLRYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTKITKQEIRNSKVDNAKMAFPERRTKDGFDPKAYKLLS
        S++ST++A   +  +EK+SN P+LRY+PLSRRKKGESPF E  + LK GD+E+LKESF TPLTKITKQEI   K+D  + + P+RRTKDGFDPKAYK ++
Subjt:  SKSSTNSANEKVPNEEKSSNLPVLRYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTKITKQEIRNSKVDNAKMAFPERRTKDGFDPKAYKLLS

Query:  NAGYDFTTHTTFKSLKIFE
         AGYDFTTHT FKSLKI E
Subjt:  NAGYDFTTHTTFKSLKIFE

A0A5D3BY54 Ty3-gypsy retrotransposon protein4.7e-0643.02Show/hide
Query:  GPITRSRSREIQPEESQTPVIANKILRRMTESAQVDATIAENLVFGKITFTSLQPSETSNPDVMSVMMTDAGISEERMAEFEKKIN
        GPITRSRS+ I  E+ Q   +A  IL+++ ES +    I EN ++     +S +  + ++PDVMSVMM D    E  MAE E+KIN
Subjt:  GPITRSRSREIQPEESQTPVIANKILRRMTESAQVDATIAENLVFGKITFTSLQPSETSNPDVMSVMMTDAGISEERMAEFEKKIN

A0A5D3BY54 Ty3-gypsy retrotransposon protein2.0e-0438.14Show/hide
Query:  HPVEKCFVLKELILKLAKERKIELDLDEPVEIWLQREFPNTSYDQPKHTENEDEGWTLNQKHIKKES--IEEVDACEVKISKSSTNSANEKVPNEEK
        HPVEK FVLKELIL+LA+E+KI+LDL+E V        P  S ++ +  E +DEGWT+  +  K++S  I++     +   + +    N+K     K
Subjt:  HPVEKCFVLKELILKLAKERKIELDLDEPVEIWLQREFPNTSYDQPKHTENEDEGWTLNQKHIKKES--IEEVDACEVKISKSSTNSANEKVPNEEK

A0A5D3BY54 Ty3-gypsy retrotransposon protein3.1e-3464.71Show/hide
Query:  SKSSTNSANEKVPNEEKSSNLPVLRYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTKITKQEIRNSKVDNAKMAFPERRTKDGFDPKAYKLLS
        S++ST++A   +  +EK+SN P+LRY+PLSRRKKGESPF E S+ LK GD+E+L+ESF TPLTKITKQE   +K D  + + P+RRTKDGFDPKAYKL++
Subjt:  SKSSTNSANEKVPNEEKSSNLPVLRYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTKITKQEIRNSKVDNAKMAFPERRTKDGFDPKAYKLLS

Query:  NAGYDFTTHTTFKSLKIFE
         AGYDFTTH  FKSLKI E
Subjt:  NAGYDFTTHTTFKSLKIFE

A0A5D3DD54 Ribonuclease H1.4e-3435.74Show/hide
Query:  HPVEKCFVLKELILKLAKERKIELDLD-----EPVEIWLQREFP-NTSYDQPKHTENEDEGWTLNQK---------------------------------
        H V+KCFVLKELIL+L +E+KIELDL+     EP+ +   +E     S ++ +  E +DEGWT+++                                  
Subjt:  HPVEKCFVLKELILKLAKERKIELDLD-----EPVEIWLQREFP-NTSYDQPKHTENEDEGWTLNQK---------------------------------

Query:  -----------------------------------------HIKKESIEEVDACEVKISKSSTN----SANEKVPNE-----------------------
                                                 ++K ++I EV   E+ +     N    S   K P++                       
Subjt:  -----------------------------------------HIKKESIEEVDACEVKISKSSTN----SANEKVPNE-----------------------

Query:  -EKSSNLPVLRYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTKITKQEIRNSKVDNAKMAFPERRTKDGFDPKAYKLLSNAGYDFTTHTTFKS
         EK+SN P+LRY+PLSRRKKGESPF E  + LK GD+++LKESF   LTKITKQE   +K+D  K + P+R+TKDGFDPKAYKL++ AGYDFT HT FKS
Subjt:  -EKSSNLPVLRYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTKITKQEIRNSKVDNAKMAFPERRTKDGFDPKAYKLLSNAGYDFTTHTTFKS

Query:  LKIFE
        LKI E
Subjt:  LKIFE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCCAATCACGCGCAGTCGCTCTAGAGAAATCCAACCTGAAGAAAGTCAAACACCTGTCATAGCAAACAAAATACTTAGACGAATGACAGAATCTGCTCAAGTTGA
TGCCACCATTGCAGAAAACCTCGTGTTTGGCAAAATCACTTTTACTTCTCTTCAACCGAGTGAAACATCAAACCCTGACGTGATGTCCGTTATGATGACTGATGCAGGCA
TTAGTGAAGAAAGAATGGCTGAATTTGAAAAGAAGATCAACATTCACCCGGTGGAGAAATGCTTTGTTTTGAAAGAGTTGATTCTGAAATTAGCTAAAGAAAGGAAGATT
GAGTTGGATCTAGATGAACCTGTGGAAATTTGGCTGCAACGAGAATTTCCAAATACCTCCTATGACCAGCCTAAGCATACTGAAAATGAAGATGAAGGATGGACTTTAAA
CCAAAAACACATAAAGAAAGAGTCGATTGAAGAGGTAGACGCTTGTGAAGTTAAGATAAGTAAGTCATCTACCAACTCTGCAAACGAAAAGGTTCCAAATGAAGAAAAAT
CATCAAATCTTCCAGTATTGCGTTACATCCCTTTATCACGACGTAAAAAGGGAGAATCACCATTTACAGAATGCTCAGAAAACTTGAAATCTGGCGATGTAGAAATCCTA
AAAGAAAGTTTCATCACACCTCTAACAAAAATCACCAAGCAAGAAATTCGGAACTCGAAGGTTGATAATGCAAAAATGGCCTTCCCCGAAAGAAGAACGAAGGATGGGTT
TGATCCTAAAGCTTACAAACTTCTATCAAATGCAGGTTACGACTTCACAACTCACACTACGTTCAAAAGTTTAAAAATCTTCGAAGGATGGGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGCCAATCACGCGCAGTCGCTCTAGAGAAATCCAACCTGAAGAAAGTCAAACACCTGTCATAGCAAACAAAATACTTAGACGAATGACAGAATCTGCTCAAGTTGA
TGCCACCATTGCAGAAAACCTCGTGTTTGGCAAAATCACTTTTACTTCTCTTCAACCGAGTGAAACATCAAACCCTGACGTGATGTCCGTTATGATGACTGATGCAGGCA
TTAGTGAAGAAAGAATGGCTGAATTTGAAAAGAAGATCAACATTCACCCGGTGGAGAAATGCTTTGTTTTGAAAGAGTTGATTCTGAAATTAGCTAAAGAAAGGAAGATT
GAGTTGGATCTAGATGAACCTGTGGAAATTTGGCTGCAACGAGAATTTCCAAATACCTCCTATGACCAGCCTAAGCATACTGAAAATGAAGATGAAGGATGGACTTTAAA
CCAAAAACACATAAAGAAAGAGTCGATTGAAGAGGTAGACGCTTGTGAAGTTAAGATAAGTAAGTCATCTACCAACTCTGCAAACGAAAAGGTTCCAAATGAAGAAAAAT
CATCAAATCTTCCAGTATTGCGTTACATCCCTTTATCACGACGTAAAAAGGGAGAATCACCATTTACAGAATGCTCAGAAAACTTGAAATCTGGCGATGTAGAAATCCTA
AAAGAAAGTTTCATCACACCTCTAACAAAAATCACCAAGCAAGAAATTCGGAACTCGAAGGTTGATAATGCAAAAATGGCCTTCCCCGAAAGAAGAACGAAGGATGGGTT
TGATCCTAAAGCTTACAAACTTCTATCAAATGCAGGTTACGACTTCACAACTCACACTACGTTCAAAAGTTTAAAAATCTTCGAAGGATGGGTTTGA
Protein sequenceShow/hide protein sequence
MGPITRSRSREIQPEESQTPVIANKILRRMTESAQVDATIAENLVFGKITFTSLQPSETSNPDVMSVMMTDAGISEERMAEFEKKINIHPVEKCFVLKELILKLAKERKI
ELDLDEPVEIWLQREFPNTSYDQPKHTENEDEGWTLNQKHIKKESIEEVDACEVKISKSSTNSANEKVPNEEKSSNLPVLRYIPLSRRKKGESPFTECSENLKSGDVEIL
KESFITPLTKITKQEIRNSKVDNAKMAFPERRTKDGFDPKAYKLLSNAGYDFTTHTTFKSLKIFEGWV