; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0002760 (gene) of Snake gourd v1 genome

Gene IDTan0002760
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibonuclease H-like superfamily protein
Genome locationLG11:15158041..15159537
RNA-Seq ExpressionTan0002760
SyntenyTan0002760
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015388020.1 uncharacterized protein LOC107177951 [Citrus sinensis]1.4e-2537.63Show/hide
Query:  FNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRYGWGPHPE------------G
        FNQA LVAKQ WR++    SLL +V++ +YF+   F+ A +G+NPSY WRSILWG ++   G RW++     +K  + + GW P PE             
Subjt:  FNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRYGWGPHPE------------G

Query:  DSVRTLLKDDGFWDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKSANQLGLRIKNNTATSSSDITKTRAMWKS-WPITILE
         +V  L+ +D  W ++ IR  F  +DA  IL I    + + D+++W +DK+G +SVKS  QL L++K     SSS   + ++ W S W + I E
Subjt:  DSVRTLLKDDGFWDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKSANQLGLRIKNNTATSSSDITKTRAMWKS-WPITILE

XP_022155286.1 uncharacterized protein LOC111022423 [Momordica charantia]2.0e-3249.1Show/hide
Query:  IFNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRYGWGP------------HPE
        IFNQA+L AKQ WR+L H +SLL K LRG+YFK  +FL A LG  PSYAWRSILWG DLF+ GYRWKVG+   I   L+   W P            H  
Subjt:  IFNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRYGWGP------------HPE

Query:  GDSVRTLLKDDGFWDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKSANQLGLRI
          SV  L++  G WDE K+R  FI  +A+ IL      +   DEI+W  DK G+FSV+SA  LG+++
Subjt:  GDSVRTLLKDDGFWDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKSANQLGLRI

XP_024035599.1 uncharacterized protein LOC112096407 [Citrus clementina]1.0e-2539.8Show/hide
Query:  FNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRYGWGPH------------PEG
        FNQALL AKQ WRLL +  SL+ KV++ RY+K  +FL+A +G++PS+ WRSILWG  + Q G RW++G+  +I+  +    W P             P G
Subjt:  FNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRYGWGPH------------PEG

Query:  DSVRTLLKDDGFWDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKSANQLGLRIK-NNTATSSSDITKT-RAMWKSWPITILELRGII
          V  L+  +  W+E+ I   F   DA+ I SI        DEI+W +D++GL+SVKS  QL L+IK     TSS+  ++  + +WK      L L G I
Subjt:  DSVRTLLKDDGFWDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKSANQLGLRIK-NNTATSSSDITKT-RAMWKSWPITILELRGII

Query:  K
        K
Subjt:  K

XP_024038343.1 uncharacterized protein LOC112097373 [Citrus clementina]8.0e-2638.14Show/hide
Query:  FNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRYGWGPHP-----------EGD
        FNQA LVAKQ WR+L   +SL+ K+L+ RYF+ ++F++A LG+NPS+ WRSILWG  +   G +W++G+   I   L++  W P P             D
Subjt:  FNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRYGWGPHP-----------EGD

Query:  S-VRTLLKDDGFWDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKSANQLGLRIKNNTATSSSDITKTRAMWKS-WPITILE
        + V  L+ +D  W+E  I   F   DAE I+ I        DE++W +DK+G +SVKS  Q+ L +K     +SS  T+ +  W + W +T+ E
Subjt:  S-VRTLLKDDGFWDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKSANQLGLRIKNNTATSSSDITKTRAMWKS-WPITILE

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]2.3e-2842.78Show/hide
Query:  FNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRYGWGPHPE------------G
        FNQA LVAKQ WRLL + NSL+ +VL+ RYF+  +FL A  G N SY WRSI+WG  + + G RW++G+  +I   +    W P PE             
Subjt:  FNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRYGWGPHPE------------G

Query:  DSVRTLLKDDGFWDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKSANQLGLRIKNNTATSSSDITKTRAMWKSW
          V  L+K D  WDE K+R  F+  D   IL I    E   DE++W +DKRG +SVKS  QL LR K   +TS      T A  K W
Subjt:  DSVRTLLKDDGFWDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKSANQLGLRIKNNTATSSSDITKTRAMWKSW

TrEMBL top hitse value%identityAlignment
A0A1R3GNW3 Reverse transcriptase1.5e-2543.04Show/hide
Query:  FNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRY-----------GWGPHPEGD
        FNQALL AKQ W+LLHH +SL+ +VL+ RYF    FL A  G  PS+ WRSIL G DL Q+G RW++G+   ++   +R+           G G  P+  
Subjt:  FNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRY-----------GWGPHPEGD

Query:  SVRTLLKDDGF-WDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKS
         V  L+ + GF WD + IR +FI ++AE I+ I  +    +D +VW FD +G++SVKS
Subjt:  SVRTLLKDDGF-WDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKS

A0A1S8AC01 Ribonuclease H-like superfamily protein5.4e-2840.21Show/hide
Query:  FNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRYGWGPH------------PEG
        FNQA LVAKQ WRLL H +SL  +VL  +YFK  +FL+A LG+NPS+ WRSI+WG  +   G RW++G   +++  + +  W P             PE 
Subjt:  FNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRYGWGPH------------PEG

Query:  DSVRTLLKDDGFWDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKSANQLGLRIKNNTATSSSDITKTRAMWKS-WPITILE
          V  L+ DD  WDE KI   F   DA+ I+S+    +   D+I+W +DK+G +SVKS  Q+ LR+K     SSS    T   W++ W + + E
Subjt:  DSVRTLLKDDGFWDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKSANQLGLRIKNNTATSSSDITKTRAMWKS-WPITILE

A0A1S8ACU2 Ribonuclease H-like superfamily protein1.1e-2536.56Show/hide
Query:  FNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRYGWGPHPEG------------
        FNQA LVAKQ WR++ +  SL+ K+L+ +YFK  +FL A LG+ PS+ WRSI+WG  +  +G RW++G+  ++K  + +  W P P+             
Subjt:  FNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRYGWGPHPEG------------

Query:  DSVRTLLKDDGFWDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKSANQLGLRIKN--NTATSSSDITKTRAMW
         +V  L+ ++  W E+ I+  F  +DAE I  I        D+I+W +DK+G +SVKS  Q+ +RIK+    ++SSS++ +   +W
Subjt:  DSVRTLLKDDGFWDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKSANQLGLRIKN--NTATSSSDITKTRAMW

A0A6J1DAR4 uncharacterized protein LOC1110189541.9e-2538.66Show/hide
Query:  IFNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRYG--WGPH------------
        +FN+ALL AKQCWR+L+H NS+L +VL+GRYFK  +F+ A +  NPSY WRSILWG DL + G RW++G+     + +  YG  W P+            
Subjt:  IFNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRYG--WGPH------------

Query:  PEGDSVRTLL-KDDGFWDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKSANQLGLRIKNN---TATSSSDITKTRAMWKSW
        P    V +L+  ++G W  + +R  F  D+A+ ILSI        D ++W ++K G++SV+S  ++ L   NN    A SSS   + R  W  +
Subjt:  PEGDSVRTLL-KDDGFWDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKSANQLGLRIKNN---TATSSSDITKTRAMWKSW

A0A6J1DRA0 uncharacterized protein LOC1110224239.5e-3349.1Show/hide
Query:  IFNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRYGWGP------------HPE
        IFNQA+L AKQ WR+L H +SLL K LRG+YFK  +FL A LG  PSYAWRSILWG DLF+ GYRWKVG+   I   L+   W P            H  
Subjt:  IFNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRYGWGP------------HPE

Query:  GDSVRTLLKDDGFWDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKSANQLGLRI
          SV  L++  G WDE K+R  FI  +A+ IL      +   DEI+W  DK G+FSV+SA  LG+++
Subjt:  GDSVRTLLKDDGFWDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKSANQLGLRI

SwissProt top hitse value%identityAlignment
P93295 Uncharacterized mitochondrial protein AtMg003104.4e-1143.9Show/hide
Query:  GIFNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRY
        G FNQALL AKQ +R++H  ++LL ++LR RYF   + +  ++GT PSYAWRSI+ G +L   G    +G     K  L+R+
Subjt:  GIFNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRY

Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein1.7e-1029.28Show/hide
Query:  FNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRYGW--------------GPHP
        FN ALL  KQ WR+L    SL+ KV + RYF   + L+A LG+ PS+ W+SI    ++ + G R  VG+   I   + R+ W               P  
Subjt:  FNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRYGW--------------GPHP

Query:  EGDSVRTLLKDDGF-------WDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKSANQLGLRIKNNTAT
        E  SV ++LK           W ++ I  LF   + + I  +   G    D   W +   G ++VKS   +  +I N  ++
Subjt:  EGDSVRTLLKDDGF-------WDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKSANQLGLRIKNNTAT

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein3.2e-1243.9Show/hide
Query:  GIFNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRY
        G FNQALL AKQ +R++H  ++LL ++LR RYF   + +  ++GT PSYAWRSI+ G +L   G    +G     K  L+R+
Subjt:  GIFNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACATTACTCGAAAGATAATGGAGTTGACGGCATTTGAATTTAGACGAGTTGTTTCAGACTCCCTAAGCATTTGTGGCATATTCAATCAGGCACTGCTGGTGGCCAA
ACAATGTTGGCGCTTGCTTCACCATACTAATTCCTTGCTCTACAAAGTACTTAGGGGTCGCTACTTCAAGGCTAGAAATTTCCTTAGCGCAAATCTCGGAACTAATCCTT
CCTATGCTTGGCGAAGCATTCTTTGGGGGTGGGATCTTTTTCAGCATGGTTACAGATGGAAGGTTGGGAGTGAACATCAAATCAAGGAAGGGTTAAACCGCTACGGGTGG
GGGCCACACCCAGAAGGGGATAGTGTTCGTACTCTGTTAAAGGATGATGGGTTTTGGGATGAGAACAAGATCAGGGGACTTTTTATCCACGATGATGCAGAAAATATCTT
GTCAATCTCGAGAACAGGCGAGTTTACCTCTGATGAGATTGTGTGGAGATTTGACAAGAGAGGTTTGTTTTCTGTCAAAAGCGCTAATCAGTTAGGCTTGCGCATAAAGA
ATAACACCGCGACCTCGAGCTCTGATATTACCAAAACAAGGGCCATGTGGAAGTCTTGGCCTATTACGATTTTGGAGTTACGTGGTATTATCAAAGGGTTGGACTCAATT
TTGAAGATTCTGATCCCTCTTATTGTTGAATCTGACTCTTGGGAGGCAATTCAGCTAATCAATGGAAATCGGAAGGACCACACCGAAGACCAGGACTTTGCTAAGGACTA
CAAATGTAGCGGCACACAAGTTGGCGCAGCGAGGACTTCGTATGTGGCGGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAACATTACTCGAAAGATAATGGAGTTGACGGCATTTGAATTTAGACGAGTTGTTTCAGACTCCCTAAGCATTTGTGGCATATTCAATCAGGCACTGCTGGTGGCCAA
ACAATGTTGGCGCTTGCTTCACCATACTAATTCCTTGCTCTACAAAGTACTTAGGGGTCGCTACTTCAAGGCTAGAAATTTCCTTAGCGCAAATCTCGGAACTAATCCTT
CCTATGCTTGGCGAAGCATTCTTTGGGGGTGGGATCTTTTTCAGCATGGTTACAGATGGAAGGTTGGGAGTGAACATCAAATCAAGGAAGGGTTAAACCGCTACGGGTGG
GGGCCACACCCAGAAGGGGATAGTGTTCGTACTCTGTTAAAGGATGATGGGTTTTGGGATGAGAACAAGATCAGGGGACTTTTTATCCACGATGATGCAGAAAATATCTT
GTCAATCTCGAGAACAGGCGAGTTTACCTCTGATGAGATTGTGTGGAGATTTGACAAGAGAGGTTTGTTTTCTGTCAAAAGCGCTAATCAGTTAGGCTTGCGCATAAAGA
ATAACACCGCGACCTCGAGCTCTGATATTACCAAAACAAGGGCCATGTGGAAGTCTTGGCCTATTACGATTTTGGAGTTACGTGGTATTATCAAAGGGTTGGACTCAATT
TTGAAGATTCTGATCCCTCTTATTGTTGAATCTGACTCTTGGGAGGCAATTCAGCTAATCAATGGAAATCGGAAGGACCACACCGAAGACCAGGACTTTGCTAAGGACTA
CAAATGTAGCGGCACACAAGTTGGCGCAGCGAGGACTTCGTATGTGGCGGGATGA
Protein sequenceShow/hide protein sequence
MNITRKIMELTAFEFRRVVSDSLSICGIFNQALLVAKQCWRLLHHTNSLLYKVLRGRYFKARNFLSANLGTNPSYAWRSILWGWDLFQHGYRWKVGSEHQIKEGLNRYGW
GPHPEGDSVRTLLKDDGFWDENKIRGLFIHDDAENILSISRTGEFTSDEIVWRFDKRGLFSVKSANQLGLRIKNNTATSSSDITKTRAMWKSWPITILELRGIIKGLDSI
LKILIPLIVESDSWEAIQLINGNRKDHTEDQDFAKDYKCSGTQVGAARTSYVAG