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Tan0002770 (gene) of Snake gourd v1 genome

Gene IDTan0002770
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG10:3277148..3277540
RNA-Seq ExpressionTan0002770
SyntenyTan0002770
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_027067422.1 uncharacterized protein LOC113693034 [Coffea arabica]6.7e-0730.43Show/hide
Query:  ETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGL---WLSNFPIWLF
        E LA+   L +A+ +G++K+ + SD  S V  IN        I   + D+  L+++F+   FS +YRT N  +H LA+ ++  +  +   W + FP+WL 
Subjt:  ETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGL---WLSNFPIWLF

Query:  ENL--GLNQILPPCN
        +     +  I P CN
Subjt:  ENL--GLNQILPPCN
XP_027067423.1 uncharacterized protein LOC113693035 [Coffea arabica]4.0e-0730.97Show/hide
Query:  ETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGL-WLSNFPIWLFEN
        E LA+   L +A+ +G++K+ + SD  S V  IN        I   + D+  L+++F+   FS +YRT N  +H LA+ ++  +  + W + FP+WL + 
Subjt:  ETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGL-WLSNFPIWLFEN

Query:  L--GLNQILPPCN
            +  I P CN
Subjt:  L--GLNQILPPCN
XP_027086649.1 uncharacterized protein LOC113708389 [Coffea arabica]5.2e-0733.98Show/hide
Query:  TNVACSETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGL-WLSNFP
        ++VA  E+LAI   L++A+  G++K+ + SD  + V+ IN       ++   + D+  L+  F+S  FS + RT N  +H LA+ +V  +R   W   FP
Subjt:  TNVACSETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGL-WLSNFP

Query:  IWL
        IWL
Subjt:  IWL
XP_027165981.1 uncharacterized protein LOC113765944 [Coffea eugenioides]5.2e-0730.97Show/hide
Query:  ETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGL-WLSNFPIWLFE-
        E LA+   L +A+  G++K+ + SD  S V  IN        I   + D+  L+++F+   FS +YRT N  +H LA+ ++  +  + W + FP+WL + 
Subjt:  ETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGL-WLSNFPIWLFE-

Query:  -NLGLNQILPPCN
            +  I P CN
Subjt:  -NLGLNQILPPCN
XP_027182178.1 uncharacterized protein LOC113780591 [Coffea eugenioides]3.0e-0732.2Show/hide
Query:  NVACSETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGL-WLSNFPI
        + A  ETLAI   L++A+  G++ + + SD    V++IN        +   + D+  L+++FES  FS + RT N  +H LA+  V   R   W S+FP 
Subjt:  NVACSETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGL-WLSNFPI

Query:  WL--FENLGLNQILPPCN
        WL       +  + P CN
Subjt:  WL--FENLGLNQILPPCN
TrEMBL top hitse value%identityAlignment
A0A6P6S9P3 uncharacterized protein LOC1136892567.3e-0731.03Show/hide
Query:  ACSETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGL-WLSNFPIWL
        A  ETLAI   L++A+ +G++ + + SD    V++IN        +   ++D+  L+++FES  FS + RT N   H LA+ ++   R   W   FP WL
Subjt:  ACSETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGL-WLSNFPIWL

Query:  --FENLGLNQILPPCN
               +  + P CN
Subjt:  --FENLGLNQILPPCN
A0A6P6SGT5 uncharacterized protein LOC1136910324.3e-0732.32Show/hide
Query:  ETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGL-WLSNFPIWLFE
        ETLA+   L +A+  G++K+ + SD  S V  IN        I   + D+  L+++F+   FS +YRT N  +H LA+ ++  +  + W + FP+WL +
Subjt:  ETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGL-WLSNFPIWLFE
A0A6P6SNG7 uncharacterized protein LOC1136930343.3e-0730.43Show/hide
Query:  ETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGL---WLSNFPIWLF
        E LA+   L +A+ +G++K+ + SD  S V  IN        I   + D+  L+++F+   FS +YRT N  +H LA+ ++  +  +   W + FP+WL 
Subjt:  ETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGL---WLSNFPIWLF

Query:  ENL--GLNQILPPCN
        +     +  I P CN
Subjt:  ENL--GLNQILPPCN
A0A6P6SNH4 uncharacterized protein LOC1136930351.9e-0730.97Show/hide
Query:  ETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGL-WLSNFPIWLFEN
        E LA+   L +A+ +G++K+ + SD  S V  IN        I   + D+  L+++F+   FS +YRT N  +H LA+ ++  +  + W + FP+WL + 
Subjt:  ETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGL-WLSNFPIWLFEN

Query:  L--GLNQILPPCN
            +  I P CN
Subjt:  L--GLNQILPPCN
A0A6P6U8A0 uncharacterized protein LOC1137083892.5e-0733.98Show/hide
Query:  TNVACSETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGL-WLSNFP
        ++VA  E+LAI   L++A+  G++K+ + SD  + V+ IN       ++   + D+  L+  F+S  FS + RT N  +H LA+ +V  +R   W   FP
Subjt:  TNVACSETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGL-WLSNFP

Query:  IWL
        IWL
Subjt:  IWL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27870.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.5e-0432.99Show/hide
Query:  NVACSETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGLWLSNF
        N   SE  A++  +Q     GY +V    D+     +ING  +    +HN+I D+ +  RKFES  F+ I R  N  A  LAK  +   + L+L++F
Subjt:  NVACSETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGLWLSNF
AT1G77815.1 BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G27870.1)9.7e-0433.75Show/hide
Query:  GYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTG----MRGLWLSN
        GY +V    D+     +ING  +    +HN+I D+ +  RKFES  F+ I R  N  A  LAK  +      +  LW+ N
Subjt:  GYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTG----MRGLWLSN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCCATGTCCAATGTCCATGACACTTTCACCAATGTGGCCTGTTCAGAAACATTGGCCATTCTCGATGGTTTGCAGCTTGCTGAGCGGTTAGGATACTCTAAGGT
TCACATACTCTCGGATTCATTATCAAATGTCGCTATGATCAATGGGGTGCAACGAACGACTGCTGAAATACATAACTACATCAATGATGTTTTATTTTTACGCCGAAAGT
TCGAGTCAGCAAAGTTTAGTCATATCTATCGTACGCGCAATTGTTGGGCGCACTGTCTGGCAAAGAAGAGTGTAACGGGTATGAGGGGTCTTTGGTTGAGTAATTTTCCA
ATATGGTTGTTTGAGAATTTGGGCTTGAACCAAATCCTCCCTCCTTGTAATCCATCCGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCCATGTCCAATGTCCATGACACTTTCACCAATGTGGCCTGTTCAGAAACATTGGCCATTCTCGATGGTTTGCAGCTTGCTGAGCGGTTAGGATACTCTAAGGT
TCACATACTCTCGGATTCATTATCAAATGTCGCTATGATCAATGGGGTGCAACGAACGACTGCTGAAATACATAACTACATCAATGATGTTTTATTTTTACGCCGAAAGT
TCGAGTCAGCAAAGTTTAGTCATATCTATCGTACGCGCAATTGTTGGGCGCACTGTCTGGCAAAGAAGAGTGTAACGGGTATGAGGGGTCTTTGGTTGAGTAATTTTCCA
ATATGGTTGTTTGAGAATTTGGGCTTGAACCAAATCCTCCCTCCTTGTAATCCATCCGTTTAA
Protein sequenceShow/hide protein sequence
MAAMSNVHDTFTNVACSETLAILDGLQLAERLGYSKVHILSDSLSNVAMINGVQRTTAEIHNYINDVLFLRRKFESAKFSHIYRTRNCWAHCLAKKSVTGMRGLWLSNFP
IWLFENLGLNQILPPCNPSV