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Tan0002799 (gene) of Snake gourd v1 genome

Gene IDTan0002799
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
Genome locationLG01:97615431..97616349
RNA-Seq ExpressionTan0002799
SyntenyTan0002799
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605668.1 hypothetical protein SDJN03_02985, partial [Cucurbita argyrosperma subsp. sororia]2.7e-1960.47Show/hide
Query:  MVDSFILKLDAEAVSSTLFIFCFLILIILIILF-------SSFHQQNDDDYDVPLSIVIHSNTNAQQNLMLHKNVTFQ---LTETLNEPDRFMSFNCSDN
        M DS IL+L AEA SSTLFIFC   LI+LIILF       SS HQ +D   DVPLSIVIHSNTNAQQN ML KN       +TETLNEPD   S   S +
Subjt:  MVDSFILKLDAEAVSSTLFIFCFLILIILIILF-------SSFHQQNDDDYDVPLSIVIHSNTNAQQNLMLHKNVTFQ---LTETLNEPDRFMSFNCSDN

Query:  NVEECDDDHEDEDEDKEDFRRRVEAFIKK
        + E+ D+D EDE ED+EDF+RRVE FI+K
Subjt:  NVEECDDDHEDEDEDKEDFRRRVEAFIKK

XP_024928006.1 uncharacterized protein LOC112491100 [Ziziphus jujuba]9.2e-0436.61Show/hide
Query:  LDAEAVSSTLFIFCFLILIILIILFSSFHQQN-DDDYDVPLSIVIHSNTNAQQNLMLHKNVTFQLTETLNEPDRFMSFNCSDNNVEECDDDHEDEDEDKE
        L  +  S++LF+FCF  LII+IIL  S    N D +  +PLS+    +T+ +Q  +  K V  ++ E  N      + N   N   E ++D E+E+ED +
Subjt:  LDAEAVSSTLFIFCFLILIILIILFSSFHQQN-DDDYDVPLSIVIHSNTNAQQNLMLHKNVTFQLTETLNEPDRFMSFNCSDNNVEECDDDHEDEDEDKE

Query:  DFRRRVEAFIKK
        + RRRVE FI+K
Subjt:  DFRRRVEAFIKK

XP_031742158.1 probable ATP-dependent RNA helicase ddx52 [Cucumis sativus]1.7e-1853.79Show/hide
Query:  MVDSFILKLDAEAVSSTLFIFCFLILIILIILF------SSFHQQNDDDYDVPLSIVIHSNTN-AQQNLMLHKNV---TFQLTETLNEPDRFMSFNCS--
        M DS IL+L A+A SSTLFIFCF  LIIL+I F      SSF QQNDD+ D+PLSIVIHS TN  +QN ML K+      ++ E+ NE +R ++FNC+  
Subjt:  MVDSFILKLDAEAVSSTLFIFCFLILIILIILF------SSFHQQNDDDYDVPLSIVIHSNTN-AQQNLMLHKNV---TFQLTETLNEPDRFMSFNCS--

Query:  -DNNVEECDDDHEDEDEDKEDFRRRVEAFIKK
         + + ++ +DD+EDEDED++DFR+RVE FI+K
Subjt:  -DNNVEECDDDHEDEDEDKEDFRRRVEAFIKK

TrEMBL top hitse value%identityAlignment
A0A6P6G1P3 uncharacterized protein LOC1124911004.4e-0436.61Show/hide
Query:  LDAEAVSSTLFIFCFLILIILIILFSSFHQQN-DDDYDVPLSIVIHSNTNAQQNLMLHKNVTFQLTETLNEPDRFMSFNCSDNNVEECDDDHEDEDEDKE
        L  +  S++LF+FCF  LII+IIL  S    N D +  +PLS+    +T+ +Q  +  K V  ++ E  N      + N   N   E ++D E+E+ED +
Subjt:  LDAEAVSSTLFIFCFLILIILIILFSSFHQQN-DDDYDVPLSIVIHSNTNAQQNLMLHKNVTFQLTETLNEPDRFMSFNCSDNNVEECDDDHEDEDEDKE

Query:  DFRRRVEAFIKK
        + RRRVE FI+K
Subjt:  DFRRRVEAFIKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGATTCTTTCATTTTGAAACTTGATGCTGAGGCAGTTTCTAGCACTCTGTTCATCTTTTGCTTCTTAATTTTAATAATACTCATCATTCTCTTCTCCAGTTTTCA
TCAGCAAAATGATGATGATTATGATGTCCCACTTTCAATTGTCATTCACAGCAACACAAATGCACAACAAAACTTGATGCTTCACAAAAATGTCACATTTCAACTGACAG
AAACCCTAAATGAACCAGATAGATTTATGAGTTTCAACTGCAGTGATAATAATGTTGAAGAGTGTGATGATGATCATGAGGATGAGGACGAGGACAAGGAGGATTTCAGA
AGAAGAGTGGAAGCCTTTATTAAAAAGGGTCGGTTGGTTGCTATCTCGACTTGGTTACATATTTTCCTACGTGCAATTTTGTTTACTAGGAGTGTCAAACGACATCGAAT
CCATTATTTCCAAATAAGAACACTCCAAGGCTGTGAATCAAATCATCTTCCAGATCTTAGTGACCAACTATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGATTCTTTCATTTTGAAACTTGATGCTGAGGCAGTTTCTAGCACTCTGTTCATCTTTTGCTTCTTAATTTTAATAATACTCATCATTCTCTTCTCCAGTTTTCA
TCAGCAAAATGATGATGATTATGATGTCCCACTTTCAATTGTCATTCACAGCAACACAAATGCACAACAAAACTTGATGCTTCACAAAAATGTCACATTTCAACTGACAG
AAACCCTAAATGAACCAGATAGATTTATGAGTTTCAACTGCAGTGATAATAATGTTGAAGAGTGTGATGATGATCATGAGGATGAGGACGAGGACAAGGAGGATTTCAGA
AGAAGAGTGGAAGCCTTTATTAAAAAGGGTCGGTTGGTTGCTATCTCGACTTGGTTACATATTTTCCTACGTGCAATTTTGTTTACTAGGAGTGTCAAACGACATCGAAT
CCATTATTTCCAAATAAGAACACTCCAAGGCTGTGAATCAAATCATCTTCCAGATCTTAGTGACCAACTATTTTAG
Protein sequenceShow/hide protein sequence
MVDSFILKLDAEAVSSTLFIFCFLILIILIILFSSFHQQNDDDYDVPLSIVIHSNTNAQQNLMLHKNVTFQLTETLNEPDRFMSFNCSDNNVEECDDDHEDEDEDKEDFR
RRVEAFIKKGRLVAISTWLHIFLRAILFTRSVKRHRIHYFQIRTLQGCESNHLPDLSDQLF