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Tan0002912 (gene) of Snake gourd v1 genome

Gene IDTan0002912
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionnucleolar protein 10
Genome locationLG03:52575677..52578665
RNA-Seq ExpressionTan0002912
SyntenyTan0002912
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0009561 - megagametogenesis (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0032040 - small-subunit processome (cellular component)
GO:0016853 - isomerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7027704.1 Nucleolar protein 10 [Cucurbita argyrosperma subsp. argyrosperma]9.9e-1883.33Show/hide
Query:  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKD-EDVNKTNKASKKKKGINSEIFQDERFANMFKNEVNFE
        R  R  VKRKLPKVNRRLANQILEEE+A+T+KKD EDVNKT KASKKKKG++SEIFQDERFANMFKNE NFE
Subjt:  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKD-EDVNKTNKASKKKKGINSEIFQDERFANMFKNEVNFE
XP_004137047.1 nucleolar protein 10 [Cucumis sativus]5.8e-1878.38Show/hide
Query:  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKDEDVNKTNKASKKKKGINSEIFQDERFANMFKNEVNFEWED
        R  R  VKRKLPKVNRRLANQILEEE+A+TEKK+EDVNKT KASKKKK ++SEIFQDERF NMFKNE NFE ++
Subjt:  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKDEDVNKTNKASKKKKGINSEIFQDERFANMFKNEVNFEWED
XP_008455234.1 PREDICTED: nucleolar protein 10 [Cucumis melo]1.4e-1981.08Show/hide
Query:  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKDEDVNKTNKASKKKKGINSEIFQDERFANMFKNEVNFEWED
        R  R  VKRKLPKVNRRLANQILEEE+A+TEKK+ED+NKT KASKKKKG+NSEIFQDERFANMFKNE NFE ++
Subjt:  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKDEDVNKTNKASKKKKGINSEIFQDERFANMFKNEVNFEWED
XP_022933434.1 nucleolar protein 10 [Cucurbita moschata]9.9e-1884.72Show/hide
Query:  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKD-EDVNKTNKASKKKKGINSEIFQDERFANMFKNEVNFE
        R  R  VKRKLPKVNRRLANQILEEE+A TEKKD EDVNKT KASKKKKG++SEIFQDERFANMFKNE NFE
Subjt:  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKD-EDVNKTNKASKKKKGINSEIFQDERFANMFKNEVNFE
XP_023540093.1 nucleolar protein 10 [Cucurbita pepo subsp. pepo]4.5e-1884.72Show/hide
Query:  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKD-EDVNKTNKASKKKKGINSEIFQDERFANMFKNEVNFE
        R  R  VKRKLPKVNRRLANQILEEE+A+TEKKD EDVNKT KASKKKKG++SEIFQDERFANMFKNE NFE
Subjt:  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKD-EDVNKTNKASKKKKGINSEIFQDERFANMFKNEVNFE
TrEMBL top hitse value%identityAlignment
A0A0A0K1Z0 NUC153 domain-containing protein2.8e-1878.38Show/hide
Query:  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKDEDVNKTNKASKKKKGINSEIFQDERFANMFKNEVNFEWED
        R  R  VKRKLPKVNRRLANQILEEE+A+TEKK+EDVNKT KASKKKK ++SEIFQDERF NMFKNE NFE ++
Subjt:  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKDEDVNKTNKASKKKKGINSEIFQDERFANMFKNEVNFEWED
A0A1S3C010 nucleolar protein 106.7e-2081.08Show/hide
Query:  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKDEDVNKTNKASKKKKGINSEIFQDERFANMFKNEVNFEWED
        R  R  VKRKLPKVNRRLANQILEEE+A+TEKK+ED+NKT KASKKKKG+NSEIFQDERFANMFKNE NFE ++
Subjt:  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKDEDVNKTNKASKKKKGINSEIFQDERFANMFKNEVNFEWED
A0A6J1DWS5 nucleolar protein 101.0e-1569.51Show/hide
Query:  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKDE--------DVNKTNKASKKKKGINSEIFQDERFANMFKNEVNFEWED
        R  R  +KRKLPKVNRRLANQILE+E+A+ EKKDE        DVNKT KASKKKKG +SEIFQDERF+NMFKNE NFE ++
Subjt:  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKDE--------DVNKTNKASKKKKGINSEIFQDERFANMFKNEVNFEWED
A0A6J1EZS1 nucleolar protein 104.8e-1884.72Show/hide
Query:  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKD-EDVNKTNKASKKKKGINSEIFQDERFANMFKNEVNFE
        R  R  VKRKLPKVNRRLANQILEEE+A TEKKD EDVNKT KASKKKKG++SEIFQDERFANMFKNE NFE
Subjt:  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKD-EDVNKTNKASKKKKGINSEIFQDERFANMFKNEVNFE
A0A6J1I2M0 nucleolar protein 10 isoform X18.2e-1883.33Show/hide
Query:  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKD-EDVNKTNKASKKKKGINSEIFQDERFANMFKNEVNFE
        R  R  VKRKLPKVNRRLANQILEEE+A+TEKKD EDVNK  KASKKKKG++SEIFQDERFANMFKNE NFE
Subjt:  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKD-EDVNKTNKASKKKKGINSEIFQDERFANMFKNEVNFE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G56990.1 embryo sac development arrest 75.1e-0447.76Show/hide
Query:  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKDEDVNKTNKASKKKKGI-NSEIFQDERFANMFKN
        RT+R   KR+LPKVNR LA ++  +E  +  K  ED   T K  KKKK I   E F D RF +MF+N
Subjt:  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKDEDVNKTNKASKKKKGI-NSEIFQDERFANMFKN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTGCCCCTCATTGCTTATTGCTGCAGACATCAACTAATCAGAATTCATAAACCACTTAAAAACGGGGGAAGAACAAAGCGTAAAAAGGTGAAAAGGAAGTTACC
CAAAGTCAACAGGCGCCTTGCAAATCAAATCCTTGAAGAGGAAGATGCAAAGACGGAAAAGAAGGATGAAGATGTCAATAAGACCAATAAGGCATCAAAGAAGAAGAAAG
GGATCAATAGCGAAATCTTTCAAGATGAACGTTTTGCGAATATGTTTAAAAATGAGGTTAACTTTGAATGGGAAGATGGCTTTGGATATCCAGGAGCTTTCTATAAAGAA
ATGGTCATACGAGTGAGCTTTTTCTCAAATCTCTCACTCTCGAAAATGTTGCTAACTATGGAAAGGTTCATTTTGATTGCAACTGGTGGGTCTACCATCAAGGAAGAAAC
AAATAAATACATGTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCTGCCCCTCATTGCTTATTGCTGCAGACATCAACTAATCAGAATTCATAAACCACTTAAAAACGGGGGAAGAACAAAGCGTAAAAAGGTGAAAAGGAAGTTACC
CAAAGTCAACAGGCGCCTTGCAAATCAAATCCTTGAAGAGGAAGATGCAAAGACGGAAAAGAAGGATGAAGATGTCAATAAGACCAATAAGGCATCAAAGAAGAAGAAAG
GGATCAATAGCGAAATCTTTCAAGATGAACGTTTTGCGAATATGTTTAAAAATGAGGTTAACTTTGAATGGGAAGATGGCTTTGGATATCCAGGAGCTTTCTATAAAGAA
ATGGTCATACGAGTGAGCTTTTTCTCAAATCTCTCACTCTCGAAAATGTTGCTAACTATGGAAAGGTTCATTTTGATTGCAACTGGTGGGTCTACCATCAAGGAAGAAAC
AAATAAATACATGTTATGA
Protein sequenceShow/hide protein sequence
MALPLIAYCCRHQLIRIHKPLKNGGRTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKDEDVNKTNKASKKKKGINSEIFQDERFANMFKNEVNFEWEDGFGYPGAFYKE
MVIRVSFFSNLSLSKMLLTMERFILIATGGSTIKEETNKYML