; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0002974 (gene) of Snake gourd v1 genome

Gene IDTan0002974
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 50S rib s in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Genome locationLG11:21695941..21696589
RNA-Seq ExpressionTan0002974
SyntenyTan0002974
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601820.1 hypothetical protein SDJN03_07053, partial [Cucurbita argyrosperma subsp. sororia]1.5e-6988.96Show/hide
Query:  MASLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTDGQINETVAAAPI
        MASLLKFKLLPTHCGV  SPTLSPRTSPLVHLRRRKTTLRMLLTRNS RRSPRR ALPDKKRDDHKDLSRSNTLKDLFVSSPPYD +DG+INETVAAAPI
Subjt:  MASLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTDGQINETVAAAPI

Query:  RNVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE
        RNVTPVCRE+   DGE+GP+  HPGSPRP GWTGFRYKYLLRKTWRP+LAGIPE
Subjt:  RNVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE

KAG7032525.1 hypothetical protein SDJN02_06574, partial [Cucurbita argyrosperma subsp. argyrosperma]3.0e-7089.61Show/hide
Query:  MASLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTDGQINETVAAAPI
        MASLLKFKLLPTHCGV  SPTLSPRTSPLVHLRRRKTTLRMLLTRNS RRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYD +DG+INETVAAAPI
Subjt:  MASLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTDGQINETVAAAPI

Query:  RNVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE
        RNVTPVCRE+   DGE+GP+  HPGSPRP GWTGFRYKYLLRKTWRP+LAGIPE
Subjt:  RNVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE

XP_022963063.1 uncharacterized protein LOC111463373 [Cucurbita moschata]1.9e-6988.96Show/hide
Query:  MASLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTDGQINETVAAAPI
        MASLLKFKLLPTHCGV  SPTLSPRTSPLVHLRRRKTTLRMLLTRNS RRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYD +DG+INETVAAAPI
Subjt:  MASLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTDGQINETVAAAPI

Query:  RNVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE
        RNVTPVCRE+   DGE+GP+S HPGSPRP GWTGFR+KYLLRKTWRP+LA IPE
Subjt:  RNVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE

XP_022971824.1 uncharacterized protein LOC111470493 [Cucurbita maxima]2.0e-6687.01Show/hide
Query:  MASLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTDGQINETVAAAPI
        MASLLKFKLLPTHCGV  SPTLSPRTSPLVHLRRRKTTLRMLLTRNS     RRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYD +DG+INETVAAAPI
Subjt:  MASLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTDGQINETVAAAPI

Query:  RNVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE
        RNVTPVCRE+   DGE+GP+  HPGSPRP GWTGFRYKYLLRKTWRP+LAGIPE
Subjt:  RNVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE

XP_023513243.1 uncharacterized protein LOC111777755 [Cucurbita pepo subsp. pepo]9.6e-6988.31Show/hide
Query:  MASLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTDGQINETVAAAPI
        MASLLKFKLLPTHCGV  SPTLSPRTSPLVHLRRRKTTLRMLLTRNS RRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYD ++ +INETVAAAPI
Subjt:  MASLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTDGQINETVAAAPI

Query:  RNVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE
        RNVTPVCRE+   DGE+GP+  HPGSPRP GWTGFRYKYLLRKTWRP+LAGIPE
Subjt:  RNVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE

TrEMBL top hitse value%identityAlignment
A0A6J1DFV6 uncharacterized protein LOC1110200642.7e-6183.23Show/hide
Query:  MASLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTDGQINETVAAAPI
        MASLLKFKLLPTHCGV  SPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKR DH DL+RSNTLKDLFVSSPPYDG DG+I E  A A  
Subjt:  MASLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTDGQINETVAAAPI

Query:  R-NVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE
          N+ PVC+EKE  DGEVG +   PGSPRPA WTGFRYKYLLRKTWRPVLAGIPE
Subjt:  R-NVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE

A0A6J1FLF8 uncharacterized protein LOC1114453023.0e-6079.22Show/hide
Query:  MASLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTDGQINETVAAAPI
        MASLLKFKLL THCGV  SPTLSPRTSPL+HLRRRKTTLRMLLTRN  RRSPRR ALP+K  DD KDL+R N LKDLFVSSPPYDGTD +INET  AAPI
Subjt:  MASLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTDGQINETVAAAPI

Query:  RNVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE
        RNVTPVC++K   D  +G + C PGSPRP GWTGFRYKYLL+KTWRPVLAGIPE
Subjt:  RNVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE

A0A6J1HGM7 uncharacterized protein LOC1114633739.4e-7088.96Show/hide
Query:  MASLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTDGQINETVAAAPI
        MASLLKFKLLPTHCGV  SPTLSPRTSPLVHLRRRKTTLRMLLTRNS RRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYD +DG+INETVAAAPI
Subjt:  MASLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTDGQINETVAAAPI

Query:  RNVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE
        RNVTPVCRE+   DGE+GP+S HPGSPRP GWTGFR+KYLLRKTWRP+LA IPE
Subjt:  RNVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE

A0A6J1I9M9 uncharacterized protein LOC1114704939.7e-6787.01Show/hide
Query:  MASLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTDGQINETVAAAPI
        MASLLKFKLLPTHCGV  SPTLSPRTSPLVHLRRRKTTLRMLLTRNS     RRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYD +DG+INETVAAAPI
Subjt:  MASLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTDGQINETVAAAPI

Query:  RNVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE
        RNVTPVCRE+   DGE+GP+  HPGSPRP GWTGFRYKYLLRKTWRP+LAGIPE
Subjt:  RNVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE

A0A6J1K1U6 uncharacterized protein LOC1114898576.1e-6180.65Show/hide
Query:  MASLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTDGQINETVAAAPI
        MASLLKFKLL THCGV  SPTLSPRTSPL+HLRRRKTTLRMLLTRN  RRSPRR ALP+K  DD KDLSR N LKDLFVSSPPYDGTDG+INET  AAPI
Subjt:  MASLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTDGQINETVAAAPI

Query:  RNVTPVCREK-EDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE
        RNVTPVC++K  DH   +G + C PGSPRP GWTGFRYKYLL+KTWRPVLAGIPE
Subjt:  RNVTPVCREK-EDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G66890.1 FUNCTIONS IN: molecular_function unknown1.9e-1441.57Show/hide
Query:  SLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGR-RSPRRRALPD--KKRDDHKDLSRSNTLKDLFVSSPPYD----------GTDG
        SL KFKLL THC        SP  SP++HLRRRK TLR+LLTR+S R R P  +   D  KK D    +  S  L DLFVSSPP++          GT  
Subjt:  SLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGR-RSPRRRALPD--KKRDDHKDLSRSNTLKDLFVSSPPYD----------GTDG

Query:  QINETVAAAPIRNVTPVCREKEDHDG-EVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE
        ++ E     P+  V+      E+     VG      GS RP      R + LLR++WRPVL  IPE
Subjt:  QINETVAAAPIRNVTPVCREKEDHDG-EVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE

AT1G68430.1 unknown protein5.5e-1439.02Show/hide
Query:  MASLLKFKLLPTHCGV---TPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTD-------GQ
        MA+L +FK L T CGV   +P+ + SPRTSPLV LRR+KTTL+MLL+      SP RR         HKD++    LKDLFVSS   +          G+
Subjt:  MASLLKFKLLPTHCGV---TPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTD-------GQ

Query:  INETVAAAPIRNVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE
          E V AA    +    R             C      P  W GF  K LL++ WRP L  I E
Subjt:  INETVAAAPIRNVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE

AT5G16200.1 50S ribosomal protein-related1.8e-0937.93Show/hide
Query:  MASLLKFKLLPTH----CGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNS-GRRSPRRRALPD----------KKRDDHKDLSRSNTLKDLFVS--SPP
        ++ L KFKL   H         SPT+SP  SP+ +LRRRK TLRML  ++S  RR   R+ L +          KKR +H+   R   L++L V+  SPP
Subjt:  MASLLKFKLLPTH----CGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNS-GRRSPRRRALPD----------KKRDDHKDLSRSNTLKDLFVS--SPP

Query:  YDG---TDGQINETVAAAPIRNVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE
        Y G    DG   E    +P+ NVT     +E      G S    GS +      FR + +LRK WRPVL  IPE
Subjt:  YDG---TDGQINETVAAAPIRNVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGCTTCTCAAATTCAAGCTCCTTCCGACCCACTGCGGCGTCACTCCGAGTCCCACCTTAAGCCCCAGGACCAGCCCTCTCGTTCACCTCCGCCGCCGCAAAAC
CACCTTGCGTATGCTCCTCACTCGCAATTCCGGCCGCCGCTCTCCTCGTCGCCGCGCCTTGCCGGACAAGAAGAGAGACGACCACAAGGATTTGTCCCGGAGCAACACGT
TGAAGGATTTGTTCGTGTCGTCGCCGCCGTATGATGGAACCGACGGCCAGATTAACGAGACGGTTGCGGCGGCTCCGATCCGAAACGTAACTCCGGTTTGTAGGGAAAAG
GAGGATCACGATGGTGAGGTTGGACCGTCCAGTTGCCATCCAGGTTCGCCTAGACCGGCCGGTTGGACCGGTTTCCGATATAAATACTTGCTCCGGAAAACCTGGCGGCC
GGTGCTTGCCGGAATCCCTGAGTAA
mRNA sequenceShow/hide mRNA sequence
TCCCAACGCCATCAAAATCCTCTTCAAATTCCCGTCTTCAATGATTACCATTTTTCAAATTTCAAAGCCCTCTGTCTCTCTCTGTAACTCCAAACTCCCACAATCCACAG
CGTCGATTCGATTTATTGATTCCATTCATTCTCTGAGCTTTTTCCATGGCGTCGCTTCTCAAATTCAAGCTCCTTCCGACCCACTGCGGCGTCACTCCGAGTCCCACCTT
AAGCCCCAGGACCAGCCCTCTCGTTCACCTCCGCCGCCGCAAAACCACCTTGCGTATGCTCCTCACTCGCAATTCCGGCCGCCGCTCTCCTCGTCGCCGCGCCTTGCCGG
ACAAGAAGAGAGACGACCACAAGGATTTGTCCCGGAGCAACACGTTGAAGGATTTGTTCGTGTCGTCGCCGCCGTATGATGGAACCGACGGCCAGATTAACGAGACGGTT
GCGGCGGCTCCGATCCGAAACGTAACTCCGGTTTGTAGGGAAAAGGAGGATCACGATGGTGAGGTTGGACCGTCCAGTTGCCATCCAGGTTCGCCTAGACCGGCCGGTTG
GACCGGTTTCCGATATAAATACTTGCTCCGGAAAACCTGGCGGCCGGTGCTTGCCGGAATCCCTGAGTAATGAATGATTTTTTTTTTCCTTTTTAACCC
Protein sequenceShow/hide protein sequence
MASLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTDGQINETVAAAPIRNVTPVCREK
EDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE