CuGenDBv2

Gene ID	Tan0003033
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Transmembrane protein
Genome location	LG06:65635479..65635928
RNA-Seq Expression	Tan0003033
Synteny	Tan0003033
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6597681.1 DNA-directed RNA polymerases II and V subunit 8A, partial [Cucurbita argyrosperma subsp. sororia]

4.2e-49

75.33

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Query:  MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-------------------GVDSALRAVNREDTDHED-ETLG
        MGISASKRVKNSLSNSPDFDSACDSTFSHCL LTQHAY GVFPYQLC AA+HLH  LT                    VDSALRAVNRED D ED ETLG
Subjt:  MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-------------------GVDSALRAVNREDTDHED-ETLG

Query:  PIRFKRWAIELFAEAVARNVGKEVMFRVPV---GIARIGAVTRSGKDLVG
        PIRFKRWA+ELFAEAV +NV KEVMFRVPV   GIA IGAVTRSGKDLVG
Subjt:  PIRFKRWAIELFAEAVARNVGKEVMFRVPV---GIARIGAVTRSGKDLVG

KAG7029126.1 hypothetical protein SDJN02_10311, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.2e-49

75.33

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Query:  MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-------------------GVDSALRAVNREDTDHED-ETLG
        MGISASKRVKNSLSNSPDFDSACDSTFSHCL LTQHAY GVFPYQLC AA+HLH  LT                    VDSALRAVNRED D ED ETLG
Subjt:  MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-------------------GVDSALRAVNREDTDHED-ETLG

Query:  PIRFKRWAIELFAEAVARNVGKEVMFRVPV---GIARIGAVTRSGKDLVG
        PIRFKRWA+ELFAEAV +NV KEVMFRVPV   GIA IGAVTRSGKDLVG
Subjt:  PIRFKRWAIELFAEAVARNVGKEVMFRVPV---GIARIGAVTRSGKDLVG

XP_022932745.1 uncharacterized protein LOC111439202 [Cucurbita moschata]

9.3e-49

74.67

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Query:  MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-------------------GVDSALRAVNREDTDHED-ETLG
        MGISASKRV+NSLSNSPDFDSACDSTFSHCL LTQHAY GVFPYQLC AA+HLH  LT                    VDSALRAVNRED D ED ETLG
Subjt:  MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-------------------GVDSALRAVNREDTDHED-ETLG

Query:  PIRFKRWAIELFAEAVARNVGKEVMFRVPV---GIARIGAVTRSGKDLVG
        PIRFKRWA+ELFAEAV +NV KEVMFRVPV   GIA IGAVTRSGKDLVG
Subjt:  PIRFKRWAIELFAEAVARNVGKEVMFRVPV---GIARIGAVTRSGKDLVG

XP_023539875.1 uncharacterized protein LOC111800422 [Cucurbita pepo subsp. pepo]

1.9e-49

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Query:  MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-------------------GVDSALRAVNREDTDHED-ETLG
        MGISASKRVKNSLSNSPDFDSACDSTFSHCL LTQHAY GVFPYQLC AA+HLH  LT                    VDSALRAVNRED D ED ETLG
Subjt:  MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-------------------GVDSALRAVNREDTDHED-ETLG

Query:  PIRFKRWAIELFAEAVARNVGKEVMFRVPV---GIARIGAVTRSGKDLVG
        PIRFKRWAIELFAEAV +NV KEVMFRVPV   GIA IGAVTRSGKDLVG
Subjt:  PIRFKRWAIELFAEAVARNVGKEVMFRVPV---GIARIGAVTRSGKDLVG

XP_038878178.1 uncharacterized protein LOC120070324 [Benincasa hispida]

5.1e-47

71.14

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Query:  MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-------------------GVDSALRAVNREDTDHEDETLGP
        MGISASKRV+NSL+NS +FD AC+STFSHCLALTQHAY GVFPYQLCAAA+HLHH +T                    VDSALRAVNR+D+D E ETLGP
Subjt:  MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-------------------GVDSALRAVNREDTDHEDETLGP

Query:  IRFKRWAIELFAEAVARNVGKEVMFRVPV---GIARIGAVTRSGKDLVG
        IRFK WAIELFAEAVA+NVGK+VM RVPV   GIA IGAVTRSGKD+VG
Subjt:  IRFKRWAIELFAEAVARNVGKEVMFRVPV---GIARIGAVTRSGKDLVG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BXX1 uncharacterized protein LOC103494601

1.6e-46

69.8

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Query:  MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-------------------GVDSALRAVNREDTDHEDETLGP
        MG+SASKRV+NSL+NSP+FDSAC+STFSHCLALTQHAY GVFPYQLC AA+HLHH LT                    VDSALRAVNR+D+D E ETLG 
Subjt:  MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-------------------GVDSALRAVNREDTDHEDETLGP

Query:  IRFKRWAIELFAEAVARNVGKEVMFRVPV---GIARIGAVTRSGKDLVG
        IRF+RWAIELFAEAV +NVGK+VM RVP+   GIA IGAVTRSGKD+VG
Subjt:  IRFKRWAIELFAEAVARNVGKEVMFRVPV---GIARIGAVTRSGKDLVG

A0A5D3D2N6 Uncharacterized protein

1.6e-46

69.8

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Query:  MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-------------------GVDSALRAVNREDTDHEDETLGP
        MG+SASKRV+NSL+NSP+FDSAC+STFSHCLALTQHAY GVFPYQLC AA+HLHH LT                    VDSALRAVNR+D+D E ETLG 
Subjt:  MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-------------------GVDSALRAVNREDTDHEDETLGP

Query:  IRFKRWAIELFAEAVARNVGKEVMFRVPV---GIARIGAVTRSGKDLVG
        IRF+RWAIELFAEAV +NVGK+VM RVP+   GIA IGAVTRSGKD+VG
Subjt:  IRFKRWAIELFAEAVARNVGKEVMFRVPV---GIARIGAVTRSGKDLVG

A0A6J1CX41 uncharacterized protein LOC111015217

2.7e-46

68.46

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Query:  MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLTG-------------------VDSALRAVNREDTDHEDETLGP
        MGIS SKRV+NSLSNSP+FDSACDSTFSHCL+ TQHAY GVFPYQLCAAA HLH  LT                    VDSALR + R D+D +DETLGP
Subjt:  MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLTG-------------------VDSALRAVNREDTDHEDETLGP

Query:  IRFKRWAIELFAEAVARNVGKEVMFRVPV---GIARIGAVTRSGKDLVG
        IRFKRWAIELFAEAVA NVG+EV+FR+PV   GIA +GAVTR+GK+LVG
Subjt:  IRFKRWAIELFAEAVARNVGKEVMFRVPV---GIARIGAVTRSGKDLVG

A0A6J1F2Z4 uncharacterized protein LOC111439202

4.5e-49

74.67

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Query:  MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-------------------GVDSALRAVNREDTDHED-ETLG
        MGISASKRV+NSLSNSPDFDSACDSTFSHCL LTQHAY GVFPYQLC AA+HLH  LT                    VDSALRAVNRED D ED ETLG
Subjt:  MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-------------------GVDSALRAVNREDTDHED-ETLG

Query:  PIRFKRWAIELFAEAVARNVGKEVMFRVPV---GIARIGAVTRSGKDLVG
        PIRFKRWA+ELFAEAV +NV KEVMFRVPV   GIA IGAVTRSGKDLVG
Subjt:  PIRFKRWAIELFAEAVARNVGKEVMFRVPV---GIARIGAVTRSGKDLVG

A0A6J1I3X0 uncharacterized protein LOC111470752

4.2e-47

73.33

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Query:  MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-------------------GVDSALRAVNREDTDHED-ETLG
        MGISASKRVKNSLSNSPDFDSACDSTFSHCL LTQHAY GVFPYQLC AA+HLH  LT                    VDSAL+AVNR D   ED ETLG
Subjt:  MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-------------------GVDSALRAVNREDTDHED-ETLG

Query:  PIRFKRWAIELFAEAVARNVGKEVMFRVPV---GIARIGAVTRSGKDLVG
        PIRFK WAIELFAEAV +NV KEVMFRVPV   GIA IGAVTRSGKDLVG
Subjt:  PIRFKRWAIELFAEAVARNVGKEVMFRVPV---GIARIGAVTRSGKDLVG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G43540.1 unknown protein

1.2e-30

50.34

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Query:  MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLTG------------------VDSALR-AVNREDTDHEDETLGP
        MGIS SKRV   LSNSP+FDSACDS +   L+L QHA+ GV PYQL +AA H+H +L+                   VDSALR  V+R     E+E LG 
Subjt:  MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLTG------------------VDSALR-AVNREDTDHEDETLGP

Query:  IRFKRWAIELFAEAVARNVGKEVMFRVP---VGIARIGAVTRSGKDLVG
          FK+WA+E+FAEAV  N  K +  R+P   VGI  IGAVTRSG++L+G
Subjt:  IRFKRWAIELFAEAVARNVGKEVMFRVP---VGIARIGAVTRSGKDLVG

Sequences

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CDS sequence

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ATGGGAATATCAGCCTCAAAACGAGTCAAAAACTCACTTTCAAACTCGCCCGATTTCGACTCAGCCTGCGATTCAACCTTCTCCCACTGCCTAGCCCTAACACAACACGC
ATACGGTGGCGTTTTCCCCTACCAACTCTGCGCCGCCGCCGAGCACCTGCACCACCACCTCACCGGCGTCGACTCAGCCCTCCGAGCCGTCAATCGCGAGGACACGGATC
ATGAAGACGAAACCCTAGGCCCGATCCGCTTCAAGCGTTGGGCAATCGAGCTATTCGCAGAGGCTGTGGCGAGGAACGTCGGAAAAGAGGTGATGTTTCGAGTTCCGGTC
GGAATTGCGCGAATCGGTGCCGTGACTCGGTCCGGAAAGGACCTGGTCGGGATTGATGAGTAG

mRNA sequence

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Protein sequence

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MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLTGVDSALRAVNREDTDHEDETLGPIRFKRWAIELFAEAVARNVGKEVMFRVPV
GIARIGAVTRSGKDLVGIDE

Tan0003033 (gene) of Snake gourd v1 genome