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Tan0003044 (gene) of Snake gourd v1 genome

Gene IDTan0003044
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationLG02:4405524..4405871
RNA-Seq ExpressionTan0003044
SyntenyTan0003044
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034014.1 uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa]1.4e-1142.98Show/hide
Query:  MNLMFSIAMSIPNLVHLYINVRRMNVNVQSFEETPIQSVDLSLGVES---SQCLDPDPQIVGTP-CDDEDMVTNNTYKEFRIKTDDEFEELDFENSVHDI
        MN MFSIA+  PN+VHLY+ V        S  +T I     +L VE     + +D +P+    P C +E+MV  N Y EFR +TDDEFEE+DF+   +++
Subjt:  MNLMFSIAMSIPNLVHLYINVRRMNVNVQSFEETPIQSVDLSLGVES---SQCLDPDPQIVGTP-CDDEDMVTNNTYKEFRIKTDDEFEELDFENSVHDI

Query:  PSKTFNELDNNVLD
        PS TF +LD N +D
Subjt:  PSKTFNELDNNVLD

KAA0040603.1 uncharacterized protein E6C27_scaffold262G001800 [Cucumis melo var. makuwa]1.8e-1141.35Show/hide
Query:  MSIPNLVHLYINVRRMNVNVQSFEETPIQSVDLSLGVESSQCLDPDPQI-VGTPCDDEDMVTNNTYKEFRIKTDDEFEELDFENSVHDIPSKTFNELDNN
        M IPN+VHLY+NV R+ +++ +    P   ++       +Q + PD +I V +  DDE++VTNN Y +FR +TDDEFEE DF+   H++PS T  ++D +
Subjt:  MSIPNLVHLYINVRRMNVNVQSFEETPIQSVDLSLGVESSQCLDPDPQI-VGTPCDDEDMVTNNTYKEFRIKTDDEFEELDFENSVHDIPSKTFNELDNN

Query:  VLDN
        V+D+
Subjt:  VLDN

KAA0060519.1 uncharacterized protein E6C27_scaffold22G003730 [Cucumis melo var. makuwa]1.4e-1141.35Show/hide
Query:  MSIPNLVHLYINVRRMNVNVQSFEETPIQSVDLSLGVESSQCLDPDPQIVGTPC-DDEDMVTNNTYKEFRIKTDDEFEELDFENSVHDIPSKTFNELDNN
        M IPN+VHLY+NV RM +++    E P   ++     + +Q + PD +IV +   DDE+MV NN Y +F+ +TDDEFEE DF+   H++PS T  +++ +
Subjt:  MSIPNLVHLYINVRRMNVNVQSFEETPIQSVDLSLGVESSQCLDPDPQIVGTPC-DDEDMVTNNTYKEFRIKTDDEFEELDFENSVHDIPSKTFNELDNN

Query:  VLDN
        V+D+
Subjt:  VLDN

TYJ95836.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]1.4e-1142.98Show/hide
Query:  MNLMFSIAMSIPNLVHLYINVRRMNVNVQSFEETPIQSVDLSLGVES---SQCLDPDPQIVGTP-CDDEDMVTNNTYKEFRIKTDDEFEELDFENSVHDI
        MN MFSIA+  PN+VHLY+ V        S  +T I     +L VE     + +D +P+    P C +E+MV  N Y EFR +TDDEFEE+DF+   +++
Subjt:  MNLMFSIAMSIPNLVHLYINVRRMNVNVQSFEETPIQSVDLSLGVES---SQCLDPDPQIVGTP-CDDEDMVTNNTYKEFRIKTDDEFEELDFENSVHDI

Query:  PSKTFNELDNNVLD
        PS TF +LD N +D
Subjt:  PSKTFNELDNNVLD

XP_022143566.1 uncharacterized protein LOC111013435 [Momordica charantia]8.0e-1243.86Show/hide
Query:  MNLMFSIAMSIPNLVHLYINVRRMNVNVQSFEETPIQSVDLSLGVESSQCLDPDPQIVGTPC----DDEDMVTNNTYKEFRIKTDDEFEELDFENSVHDI
        ++LMF+IA+S P LV L++NVR M +NV    E P Q       +E SQCLD +P++V  P     +D D++ ++ + E R  TDDEF+ELD E   HDI
Subjt:  MNLMFSIAMSIPNLVHLYINVRRMNVNVQSFEETPIQSVDLSLGVESSQCLDPDPQIVGTPC----DDEDMVTNNTYKEFRIKTDDEFEELDFENSVHDI

Query:  PSKTFNELDNNVLD
        PS TFN++ N++++
Subjt:  PSKTFNELDNNVLD

TrEMBL top hitse value%identityAlignment
A0A5A7SS31 DBD_Tnp_Mut domain-containing protein6.6e-1242.98Show/hide
Query:  MNLMFSIAMSIPNLVHLYINVRRMNVNVQSFEETPIQSVDLSLGVES---SQCLDPDPQIVGTP-CDDEDMVTNNTYKEFRIKTDDEFEELDFENSVHDI
        MN MFSIA+  PN+VHLY+ V        S  +T I     +L VE     + +D +P+    P C +E+MV  N Y EFR +TDDEFEE+DF+   +++
Subjt:  MNLMFSIAMSIPNLVHLYINVRRMNVNVQSFEETPIQSVDLSLGVES---SQCLDPDPQIVGTP-CDDEDMVTNNTYKEFRIKTDDEFEELDFENSVHDI

Query:  PSKTFNELDNNVLD
        PS TF +LD N +D
Subjt:  PSKTFNELDNNVLD

A0A5A7V456 Uncharacterized protein6.6e-1241.35Show/hide
Query:  MSIPNLVHLYINVRRMNVNVQSFEETPIQSVDLSLGVESSQCLDPDPQIVGTPC-DDEDMVTNNTYKEFRIKTDDEFEELDFENSVHDIPSKTFNELDNN
        M IPN+VHLY+NV RM +++    E P   ++     + +Q + PD +IV +   DDE+MV NN Y +F+ +TDDEFEE DF+   H++PS T  +++ +
Subjt:  MSIPNLVHLYINVRRMNVNVQSFEETPIQSVDLSLGVESSQCLDPDPQIVGTPC-DDEDMVTNNTYKEFRIKTDDEFEELDFENSVHDIPSKTFNELDNN

Query:  VLDN
        V+D+
Subjt:  VLDN

A0A5D3BAB0 Serine/threonine-protein phosphatase 7 long form-like protein6.6e-1242.98Show/hide
Query:  MNLMFSIAMSIPNLVHLYINVRRMNVNVQSFEETPIQSVDLSLGVES---SQCLDPDPQIVGTP-CDDEDMVTNNTYKEFRIKTDDEFEELDFENSVHDI
        MN MFSIA+  PN+VHLY+ V        S  +T I     +L VE     + +D +P+    P C +E+MV  N Y EFR +TDDEFEE+DF+   +++
Subjt:  MNLMFSIAMSIPNLVHLYINVRRMNVNVQSFEETPIQSVDLSLGVES---SQCLDPDPQIVGTP-CDDEDMVTNNTYKEFRIKTDDEFEELDFENSVHDI

Query:  PSKTFNELDNNVLD
        PS TF +LD N +D
Subjt:  PSKTFNELDNNVLD

A0A5D3C2N3 Uncharacterized protein8.7e-1241.35Show/hide
Query:  MSIPNLVHLYINVRRMNVNVQSFEETPIQSVDLSLGVESSQCLDPDPQI-VGTPCDDEDMVTNNTYKEFRIKTDDEFEELDFENSVHDIPSKTFNELDNN
        M IPN+VHLY+NV R+ +++ +    P   ++       +Q + PD +I V +  DDE++VTNN Y +FR +TDDEFEE DF+   H++PS T  ++D +
Subjt:  MSIPNLVHLYINVRRMNVNVQSFEETPIQSVDLSLGVESSQCLDPDPQI-VGTPCDDEDMVTNNTYKEFRIKTDDEFEELDFENSVHDIPSKTFNELDNN

Query:  VLDN
        V+D+
Subjt:  VLDN

A0A6J1CQN0 uncharacterized protein LOC1110134353.9e-1243.86Show/hide
Query:  MNLMFSIAMSIPNLVHLYINVRRMNVNVQSFEETPIQSVDLSLGVESSQCLDPDPQIVGTPC----DDEDMVTNNTYKEFRIKTDDEFEELDFENSVHDI
        ++LMF+IA+S P LV L++NVR M +NV    E P Q       +E SQCLD +P++V  P     +D D++ ++ + E R  TDDEF+ELD E   HDI
Subjt:  MNLMFSIAMSIPNLVHLYINVRRMNVNVQSFEETPIQSVDLSLGVESSQCLDPDPQIVGTPC----DDEDMVTNNTYKEFRIKTDDEFEELDFENSVHDI

Query:  PSKTFNELDNNVLD
        PS TFN++ N++++
Subjt:  PSKTFNELDNNVLD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTTAATGTTCTCAATTGCGATGTCAATCCCAAATTTAGTACATTTATATATCAATGTAAGAAGGATGAATGTGAATGTACAAAGCTTTGAAGAAACGCCTATTCA
ATCTGTTGATCTTAGCCTAGGTGTTGAATCCAGCCAATGTCTTGACCCAGATCCTCAAATAGTTGGTACACCGTGTGATGATGAAGATATGGTTACAAATAATACATATA
AAGAGTTTAGAATCAAAACGGATGATGAATTTGAAGAGTTGGATTTTGAGAATAGTGTACATGACATCCCTTCAAAAACATTTAATGAGTTGGATAACAATGTATTAGAT
AACACTCACAGAACATGA
mRNA sequenceShow/hide mRNA sequence
ATGAACTTAATGTTCTCAATTGCGATGTCAATCCCAAATTTAGTACATTTATATATCAATGTAAGAAGGATGAATGTGAATGTACAAAGCTTTGAAGAAACGCCTATTCA
ATCTGTTGATCTTAGCCTAGGTGTTGAATCCAGCCAATGTCTTGACCCAGATCCTCAAATAGTTGGTACACCGTGTGATGATGAAGATATGGTTACAAATAATACATATA
AAGAGTTTAGAATCAAAACGGATGATGAATTTGAAGAGTTGGATTTTGAGAATAGTGTACATGACATCCCTTCAAAAACATTTAATGAGTTGGATAACAATGTATTAGAT
AACACTCACAGAACATGA
Protein sequenceShow/hide protein sequence
MNLMFSIAMSIPNLVHLYINVRRMNVNVQSFEETPIQSVDLSLGVESSQCLDPDPQIVGTPCDDEDMVTNNTYKEFRIKTDDEFEELDFENSVHDIPSKTFNELDNNVLD
NTHRT