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Tan0003120 (gene) of Snake gourd v1 genome

Gene IDTan0003120
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG09:5080556..5081005
RNA-Seq ExpressionTan0003120
SyntenyTan0003120
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2615755.1 hypothetical protein D8674_022343 [Pyrus ussuriensis x Pyrus communis]4.0e-1132.39Show/hide
Query:  GVVKLNSDVACHPTLHATSLGVVIRDLRGAFLCAKDEILHERMDPLSTKALAMLKGMEMAASKGMTNLWIESNAQVLVRAIHAHNLRSTPQGVLLEEIRN
        G +KLN D A         +G++IR+  G F+ A   +  E   P+  +ALAM  G+E+   +G+  + IES+A  +V A+   ++ S+P G ++E+ + 
Subjt:  GVVKLNSDVACHPTLHATSLGVVIRDLRGAFLCAKDEILHERMDPLSTKALAMLKGMEMAASKGMTNLWIESNAQVLVRAIHAHNLRSTPQGVLLEEIRN

Query:  CMIENRFIELIFCSRTTNQVAHNLAKWALVSNNSYIWEFNEP
         +       +       N VAH+LA++AL S  +Y W FNEP
Subjt:  CMIENRFIELIFCSRTTNQVAHNLAKWALVSNNSYIWEFNEP

KAE8779439.1 hypothetical protein D1007_47530 [Hordeum vulgare]6.8e-1142.2Show/hide
Query:  GVVIRDLRGAFLCAKDEILHERMDPLSTKALAMLKGMEMAASKGMTNLWIESNAQVLVRAIHAHNLRSTPQGVLLEEIRN-CMIENRFIELIFCSRTTNQ
        G VIRD +GAFL AK   L     PL  +ALA +K  E +A  G+  L +ES+ QVLV+A+H         GVLL E R+ C       +  FCSR  N+
Subjt:  GVVIRDLRGAFLCAKDEILHERMDPLSTKALAMLKGMEMAASKGMTNLWIESNAQVLVRAIHAHNLRSTPQGVLLEEIRN-CMIENRFIELIFCSRTTNQ

Query:  VAHNLAKWA
         AH LA ++
Subjt:  VAHNLAKWA

KAE8803593.1 hypothetical protein D1007_20544 [Hordeum vulgare]1.5e-1037.01Show/hide
Query:  VKLNSDVACHPTLHATSLGVVIRDLRGAFLCAKDEILHERMDPLSTKALAMLKGMEMAASKGMTNLWIESNAQVLVRAIHAHNLRSTPQGVLLEEIRN-C
        VK+N D   +      + G VIRD +  FL AK   L     PL  +ALA +K  E +A  G+  L +ES+ QVLV+A+H         G LL E R+ C
Subjt:  VKLNSDVACHPTLHATSLGVVIRDLRGAFLCAKDEILHERMDPLSTKALAMLKGMEMAASKGMTNLWIESNAQVLVRAIHAHNLRSTPQGVLLEEIRN-C

Query:  MIENRFIELIFCSRTTNQVAHNLAKWA
               +  FCSR  N+ AH LA ++
Subjt:  MIENRFIELIFCSRTTNQVAHNLAKWA

PNX74000.1 ribonuclease H [Trifolium pratense]8.8e-1130.43Show/hide
Query:  GVVKLNSDVACHPTLHATSLGVVIRDLRGAFLCAKDEILHERMDPLSTKALAMLKGMEMAASKGMTNLWIESNAQVLVRAIHAHNLRSTPQGVLLEEIRN
        GVVK N D + + T+ AT  G   RD  G F+ A   I++ +++ +  +A+A+ + ME    +G++++  ES  +++V AI +  +  +   +L+  I++
Subjt:  GVVKLNSDVACHPTLHATSLGVVIRDLRGAFLCAKDEILHERMDPLSTKALAMLKGMEMAASKGMTNLWIESNAQVLVRAIHAHNLRSTPQGVLLEEIRN

Query:  CMIENRFIELIFCSRTTNQVAHNLAKWALVSNNSYIWE
         ++ N   E+ F  R  N VAH+LA+ A   ++ YI+E
Subjt:  CMIENRFIELIFCSRTTNQVAHNLAKWALVSNNSYIWE

XP_038704726.1 uncharacterized protein LOC120000672 [Tripterygium wilfordii]3.0e-1135.94Show/hide
Query:  AEGVVKLNSDVACHPTLHATSLGVVIRDLRGAFLCAKDEILHERMDPLSTKALAMLKGMEMAASKGMTNLWIESNAQVLVRAIHAHNLRSTPQGVLLEEI
        + G +KL+ D A     HA  +G VIRD  G    A  E +     P   KA A++KG ++A   G++NL IES++ VLV AI +      P G +L++I
Subjt:  AEGVVKLNSDVACHPTLHATSLGVVIRDLRGAFLCAKDEILHERMDPLSTKALAMLKGMEMAASKGMTNLWIESNAQVLVRAIHAHNLRSTPQGVLLEEI

Query:  RNCMIENRFIELIFCSRTTNQVAHNLAK
        R+ +     + L +  R  N+VAH LA+
Subjt:  RNCMIENRFIELIFCSRTTNQVAHNLAK

TrEMBL top hitse value%identityAlignment
A0A0J8BAU9 Uncharacterized protein9.5e-1131.69Show/hide
Query:  GVVKLNSDVACHPTLHATSLGVVIRDLRGAFLCAKDEILHERMDPLSTKALAMLKGMEMAASKGMTNLWIESNAQVLVRAIHAHNLRSTPQGVLLEEIRN
        G +K+N D A +       LG+V RD  G  L A    +         +A A+L   E A ++G +N+ +ES+AQV++ AI++   R      +LE++ N
Subjt:  GVVKLNSDVACHPTLHATSLGVVIRDLRGAFLCAKDEILHERMDPLSTKALAMLKGMEMAASKGMTNLWIESNAQVLVRAIHAHNLRSTPQGVLLEEIRN

Query:  CMIENRFIELIFCSRTTNQVAHNLAKWALVSNNSYIWEFNEP
         +     I+  FC R  N++AH LAKWA  +    +W    P
Subjt:  CMIENRFIELIFCSRTTNQVAHNLAKWALVSNNSYIWEFNEP

A0A2K3L661 Ribonuclease H4.3e-1130.43Show/hide
Query:  GVVKLNSDVACHPTLHATSLGVVIRDLRGAFLCAKDEILHERMDPLSTKALAMLKGMEMAASKGMTNLWIESNAQVLVRAIHAHNLRSTPQGVLLEEIRN
        GVVK N D + + T+ AT  G   RD  G F+ A   I++ +++ +  +A+A+ + ME    +G++++  ES  +++V AI +  +  +   +L+  I++
Subjt:  GVVKLNSDVACHPTLHATSLGVVIRDLRGAFLCAKDEILHERMDPLSTKALAMLKGMEMAASKGMTNLWIESNAQVLVRAIHAHNLRSTPQGVLLEEIRN

Query:  CMIENRFIELIFCSRTTNQVAHNLAKWALVSNNSYIWE
         ++ N   E+ F  R  N VAH+LA+ A   ++ YI+E
Subjt:  CMIENRFIELIFCSRTTNQVAHNLAKWALVSNNSYIWE

A0A5N5GJP1 RNase H domain-containing protein1.9e-1132.39Show/hide
Query:  GVVKLNSDVACHPTLHATSLGVVIRDLRGAFLCAKDEILHERMDPLSTKALAMLKGMEMAASKGMTNLWIESNAQVLVRAIHAHNLRSTPQGVLLEEIRN
        G +KLN D A         +G++IR+  G F+ A   +  E   P+  +ALAM  G+E+   +G+  + IES+A  +V A+   ++ S+P G ++E+ + 
Subjt:  GVVKLNSDVACHPTLHATSLGVVIRDLRGAFLCAKDEILHERMDPLSTKALAMLKGMEMAASKGMTNLWIESNAQVLVRAIHAHNLRSTPQGVLLEEIRN

Query:  CMIENRFIELIFCSRTTNQVAHNLAKWALVSNNSYIWEFNEP
         +       +       N VAH+LA++AL S  +Y W FNEP
Subjt:  CMIENRFIELIFCSRTTNQVAHNLAKWALVSNNSYIWEFNEP

A0A6P9DX22 uncharacterized protein LOC1089848671.6e-1031.43Show/hide
Query:  KLNSDVACHPTLHATSLGVVIRDLRGAFLCAKDEILHERMDPLSTKALAMLKGMEMAASKGMTNLWIESNAQVLVRAIHAHNLRSTPQGVLLEEIRNCMI
        K N D A +       LGVVIRD  G  L AK      R  P   +  AML+ ME+    G   +W+E +A+ ++ A++      +  G ++E+++  + 
Subjt:  KLNSDVACHPTLHATSLGVVIRDLRGAFLCAKDEILHERMDPLSTKALAMLKGMEMAASKGMTNLWIESNAQVLVRAIHAHNLRSTPQGVLLEEIRNCMI

Query:  ENRFIELIFCSRTTNQVAHNLAKWALVSNNSYIWEFNEPE
        ++     +F  R  N+VAH+LAK AL   N   W    PE
Subjt:  ENRFIELIFCSRTTNQVAHNLAKWALVSNNSYIWEFNEPE

A0A6P9EHH2 uncharacterized protein LOC1183476711.2e-1031.43Show/hide
Query:  KLNSDVACHPTLHATSLGVVIRDLRGAFLCAKDEILHERMDPLSTKALAMLKGMEMAASKGMTNLWIESNAQVLVRAIHAHNLRSTPQGVLLEEIRNCMI
        K N D A +       LGVVIRD  G  L AK      R  P   +  AML+ ME+    G   +W+E +A+ ++ A++      +  G ++E+++  + 
Subjt:  KLNSDVACHPTLHATSLGVVIRDLRGAFLCAKDEILHERMDPLSTKALAMLKGMEMAASKGMTNLWIESNAQVLVRAIHAHNLRSTPQGVLLEEIRNCMI

Query:  ENRFIELIFCSRTTNQVAHNLAKWALVSNNSYIWEFNEPE
        ++     +F  R  N+VAH+LAK AL   N   W    PE
Subjt:  ENRFIELIFCSRTTNQVAHNLAKWALVSNNSYIWEFNEPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACCCAGGCGGAAGGCGTCGTGAAACTAAATTCTGATGTTGCATGTCACCCGACCCTCCATGCCACTAGTTTAGGAGTTGTGATTCGCGATTTAAGGGGAGCGTT
CCTTTGTGCCAAAGACGAGATTCTCCATGAAAGGATGGACCCTTTATCTACAAAAGCTCTAGCGATGCTTAAAGGAATGGAAATGGCAGCAAGCAAGGGAATGACTAATC
TCTGGATTGAGTCTAATGCCCAAGTGTTAGTAAGGGCTATCCACGCACACAACCTTCGATCAACCCCTCAAGGTGTCCTTCTAGAAGAAATAAGAAACTGCATGATTGAA
AATAGATTTATTGAGCTCATCTTTTGCTCAAGAACAACAAATCAAGTAGCCCATAATCTGGCAAAATGGGCCTTGGTATCTAATAATTCCTATATATGGGAGTTCAATGA
GCCTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAACCCAGGCGGAAGGCGTCGTGAAACTAAATTCTGATGTTGCATGTCACCCGACCCTCCATGCCACTAGTTTAGGAGTTGTGATTCGCGATTTAAGGGGAGCGTT
CCTTTGTGCCAAAGACGAGATTCTCCATGAAAGGATGGACCCTTTATCTACAAAAGCTCTAGCGATGCTTAAAGGAATGGAAATGGCAGCAAGCAAGGGAATGACTAATC
TCTGGATTGAGTCTAATGCCCAAGTGTTAGTAAGGGCTATCCACGCACACAACCTTCGATCAACCCCTCAAGGTGTCCTTCTAGAAGAAATAAGAAACTGCATGATTGAA
AATAGATTTATTGAGCTCATCTTTTGCTCAAGAACAACAAATCAAGTAGCCCATAATCTGGCAAAATGGGCCTTGGTATCTAATAATTCCTATATATGGGAGTTCAATGA
GCCTGAATGA
Protein sequenceShow/hide protein sequence
METQAEGVVKLNSDVACHPTLHATSLGVVIRDLRGAFLCAKDEILHERMDPLSTKALAMLKGMEMAASKGMTNLWIESNAQVLVRAIHAHNLRSTPQGVLLEEIRNCMIE
NRFIELIFCSRTTNQVAHNLAKWALVSNNSYIWEFNEPE