; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0003125 (gene) of Snake gourd v1 genome

Gene IDTan0003125
OrganismTrichosanthes anguina (Snake gourd v1)
Description50S ribosomal protein L29, chloroplastic-like
Genome locationLG01:14053166..14056570
RNA-Seq ExpressionTan0003125
SyntenyTan0003125
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001854 - Ribosomal protein L29/L35
IPR036049 - Ribosomal protein L29/L35 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577307.1 50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.9e-7191.67Show/hide
Query:  MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        M+NLSIASPSSV++P+K LSSTSKSSFNGLQIRFPFSFRVPPK ACTGG NS VVMMAKR+ ELK+IRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
Subjt:  MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEE AAE AEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

XP_022941582.1 50S ribosomal protein L29, chloroplastic-like [Cucurbita moschata]2.0e-7294.05Show/hide
Query:  MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MINLSIASPSSVS PSK LSSTSKSSFNG QIRFPFSFRVPPKTA TGG NSSVVMMAKR+ ELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFK
Subjt:  MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

XP_022977189.1 50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima]4.5e-7293.45Show/hide
Query:  MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        M+NLSIASPSSVS PSK LSSTSKSSFNG QIRFPFSFRVPPKTA TGG NSSVVMMAKR+ ELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFK
Subjt:  MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

XP_023531622.1 50S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo]1.0e-7193.45Show/hide
Query:  MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MINLSIASPSSVS PSK LSSTSKSSFNG QIRFPFSFRVPPKTA TGG NS VVMMAKR+ ELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFK
Subjt:  MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

XP_038903244.1 50S ribosomal protein L29, chloroplastic [Benincasa hispida]1.8e-7394.64Show/hide
Query:  MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MINLSIASPS+VS+P KVL+STSKSSFNGLQIRFPFSFRVPPKTACTGG NSSVVMMAKR+ ELKEIRAK+TEEI EEVVDLKGELLMLRLQKSARNEFK
Subjt:  MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

TrEMBL top hitse value%identityAlignment
A0A6J1C3N4 50S ribosomal protein L29, chloroplastic3.9e-6992.26Show/hide
Query:  MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MINLSIASPS+VSLPS VLSSTSKSSF GLQIR PFS RV  KT C G  NSSVVMMAKR+ ELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
Subjt:  MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

A0A6J1EMX4 50S ribosomal protein L29, chloroplastic-like3.9e-6990.85Show/hide
Query:  MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        M+NLSIASPSSV++P+K LSSTSKSSFNGLQIRFPFS RVPPK ACTGG NS VVMMAKR+ ELK+IRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
Subjt:  MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE AAE++
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEA

A0A6J1FMW5 50S ribosomal protein L29, chloroplastic-like9.9e-7394.05Show/hide
Query:  MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MINLSIASPSSVS PSK LSSTSKSSFNG QIRFPFSFRVPPKTA TGG NSSVVMMAKR+ ELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFK
Subjt:  MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

A0A6J1IQR3 50S ribosomal protein L29, chloroplastic-like2.2e-7293.45Show/hide
Query:  MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        M+NLSIASPSSVS PSK LSSTSKSSFNG QIRFPFSFRVPPKTA TGG NSSVVMMAKR+ ELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFK
Subjt:  MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

A0A6J1JCM6 50S ribosomal protein L29, chloroplastic-like1.4e-7192.26Show/hide
Query:  MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MINLSIASPSSV++P+K LSSTSKSSFNGLQIRFPFSFRVPPK AC GG NS VVMMAKR+ ELK+IRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
Subjt:  MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE AAE AEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

SwissProt top hitse value%identityAlignment
P82248 50S ribosomal protein L29, chloroplastic5.3e-3960Show/hide
Query:  ASPSSVSLPSKVLSS-TSKSSFNGLQ---IRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSS
        ++P S  L S   S+  +KSSF+GL+   +    S R+  +T     P SSVV+M K++ ELKE+R KT E++NEE++ LKGEL MLRLQ+SAR  FK S
Subjt:  ASPSSVSLPSKVLSS-TSKSSFNGLQ---IRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSS

Query:  EFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKS
        +F RMRKR+ARMLTVKREREIE+GVGKRLSRKLD+ WK+SIVVRPPPSLKKL+E+  A  EAEK+
Subjt:  EFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKS

Q49ZG0 50S ribosomal protein L291.4e-0446.15Show/hide
Query:  VELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEG
        ++ KEIR  TT EI E++   K EL  LR Q +     +++  R +RK IAR+ TV REREIE+G
Subjt:  VELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEG

Q4L8A6 50S ribosomal protein L293.2e-0446.88Show/hide
Query:  VELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEE
        ++ KEIR  TT EI E++   K EL  LR Q +     +++  R +RK IAR+ TV REREIEE
Subjt:  VELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEE

Q9FJP3 50S ribosomal protein L29, chloroplastic6.2e-4866.07Show/hide
Query:  MINLSIASPSSVSLPSKVLSS--TSKSSFNGLQIRFPFSFRVP-PKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARN
        M++LSIA+P + ++  +  +S  ++ SSF+G++I+   S RVP   T  +  P  SVVMM+KR+ ELKEIR+KTTE++ EEVVDLKGEL MLRLQKSARN
Subjt:  MINLSIASPSSVSLPSKVLSS--TSKSSFNGLQIRFPFSFRVP-PKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARN

Query:  EFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE
        EFKSS+FRRM+K++ARMLTVKREREI+EG+ KRLSRKLDR+WKKSIV RPPPSLKKL+EEEAA E AE
Subjt:  EFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE

Q9SWI6 50S ribosomal protein L29, chloroplastic4.6e-3575.47Show/hide
Query:  SSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSL
        +++V MAKR+ EL+EIRA TTE++ EEVVDLKGEL +LRL++SAR EFK+SEF RMRKRIARMLTVKREREIE+G+ KRLSRKLDRKWK+SIVVRPPPSL
Subjt:  SSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSL

Query:  KKLREE
        +  +EE
Subjt:  KKLREE

Arabidopsis top hitse value%identityAlignment
AT5G65220.1 Ribosomal L29 family protein4.4e-4966.07Show/hide
Query:  MINLSIASPSSVSLPSKVLSS--TSKSSFNGLQIRFPFSFRVP-PKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARN
        M++LSIA+P + ++  +  +S  ++ SSF+G++I+   S RVP   T  +  P  SVVMM+KR+ ELKEIR+KTTE++ EEVVDLKGEL MLRLQKSARN
Subjt:  MINLSIASPSSVSLPSKVLSS--TSKSSFNGLQIRFPFSFRVP-PKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARN

Query:  EFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE
        EFKSS+FRRM+K++ARMLTVKREREI+EG+ KRLSRKLDR+WKKSIV RPPPSLKKL+EEEAA E AE
Subjt:  EFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAAACCTTTCAATTGCTTCGCCTTCGAGCGTTTCGCTCCCTTCAAAAGTTCTTAGCTCCACCTCCAAATCCTCCTTCAATGGCCTTCAAATCCGTTTCCCATTTTC
GTTTCGCGTTCCTCCTAAAACGGCATGTACCGGAGGCCCCAATTCGTCGGTGGTAATGATGGCGAAGAGGGACGTGGAATTGAAGGAAATCAGAGCGAAAACTACTGAGG
AAATAAACGAAGAGGTCGTCGATCTTAAGGGTGAGCTTCTTATGCTTCGGCTTCAGAAATCAGCTCGCAATGAGTTTAAGTCCAGCGAATTCCGCCGCATGCGCAAACGG
ATTGCTCGGATGCTAACTGTAAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGGAAAAGGCTGTCAAGAAAGCTAGACAGAAAGTGGAAGAAAAGTATTGTCGTCAGACC
ACCTCCATCTTTGAAGAAGTTGCGAGAGGAAGAAGCGGCAGCTGAAGAAGCTGAGAAATCTGCTTGA
mRNA sequenceShow/hide mRNA sequence
GGCGAGAGCTTATCTTCATCTTCAAGAGCAGCTGGGCTTTCTTCTTCGAACAACAGCGCTGTGACTGAGCGAAACCATACACAAACTCTGAAGATGATAAACCTTTCAAT
TGCTTCGCCTTCGAGCGTTTCGCTCCCTTCAAAAGTTCTTAGCTCCACCTCCAAATCCTCCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTCGCGTTCCTCCTA
AAACGGCATGTACCGGAGGCCCCAATTCGTCGGTGGTAATGATGGCGAAGAGGGACGTGGAATTGAAGGAAATCAGAGCGAAAACTACTGAGGAAATAAACGAAGAGGTC
GTCGATCTTAAGGGTGAGCTTCTTATGCTTCGGCTTCAGAAATCAGCTCGCAATGAGTTTAAGTCCAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAAC
TGTAAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGGAAAAGGCTGTCAAGAAAGCTAGACAGAAAGTGGAAGAAAAGTATTGTCGTCAGACCACCTCCATCTTTGAAGA
AGTTGCGAGAGGAAGAAGCGGCAGCTGAAGAAGCTGAGAAATCTGCTTGATCCAATCAGATATGCTCTCAACCAATATTGTAGCTTTATGAGTTCAAGATGTTGAGAATG
CTATTTAAACTATGTTTTTCTGAAAAAATCTAATCTTGTACTTAGCAGCTTATGCATAAATGGAAATAGACTAATTAGCAAATATATAATTTTTTCCATAATGATTCTTC
AAATTTAAATTCTATACTGTTAGGAAAGAAGCCCACTAAAGTAAAGCCCAAATGAAGCCCAAGTGTTATATTTTAGTTAGGGTATCTGTTATGTATTAGTTGAGTTTTTT
GTAATTTGTCAAAACCATTTTTCTGGGTTCGTTAGATAAGTTGTTAGGAGTTTTTTTCACCTCTGTTAACTTTATATATACCCTATTCTCTCAAGGTAGAAAGTGTGATC
TTAACAATGATTTTCTTCTTGAAAAGATAATAAAGAGAACAGAGGTTTTTCTCCTAGCAATTCTTTGTGTTGATCAAAACATGGTATCAGAGCTTCTTGTCTAGCA
Protein sequenceShow/hide protein sequence
MINLSIASPSSVSLPSKVLSSTSKSSFNGLQIRFPFSFRVPPKTACTGGPNSSVVMMAKRDVELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKR
IARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA