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Tan0003195 (gene) of Snake gourd v1 genome

Gene IDTan0003195
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG04:41207122..41207388
RNA-Seq ExpressionTan0003195
SyntenyTan0003195
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035918.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.9e-0953.62Show/hide
Query:  MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKSKTRERLTCKKVSL
        M+  + TS  RMV L +KV+MLMK V+ERDYEI S KNHIESHD  ESSHT  VK+  + +   +++ L
Subjt:  MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKSKTRERLTCKKVSL

KAA0036729.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-0962.71Show/hide
Query:  MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKSKTR
        M+  V TS  RM  LE+KV+MLMKAV+ERDYEI S KNHIESHD  ESSHT  +K+  +
Subjt:  MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKSKTR

KAA0068081.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.4e-1069.09Show/hide
Query:  MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVK
        M+  V TS  RMV LE+KV+M+MK V+ERDYEI S KNHIESHDV ESSHT+ VK
Subjt:  MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVK

TYK07338.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.2e-0966.07Show/hide
Query:  MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKS
        M+  V TS  RM  LE+KV+MLMKAV+ERDYEI S KNHIESHD  ESSHT  +K+
Subjt:  MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKS

TYK13602.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.9e-0953.52Show/hide
Query:  MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKSKTRERLTCKKVSLNI
        MM+ V TS  RM+ LE+K++ML+KAV+ R+YEI S KNHIES D  ESSH  + +  T+ R  CKKV+  I
Subjt:  MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKSKTRERLTCKKVSLNI

TrEMBL top hitse value%identityAlignment
A0A5A7SZB7 Ty3-gypsy retrotransposon protein2.4e-0953.62Show/hide
Query:  MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKSKTRERLTCKKVSL
        M+  + TS  RMV L +KV+MLMK V+ERDYEI S KNHIESHD  ESSHT  VK+  + +   +++ L
Subjt:  MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKSKTRERLTCKKVSL

A0A5A7T5T3 Ty3-gypsy retrotransposon protein8.1e-1062.71Show/hide
Query:  MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKSKTR
        M+  V TS  RM  LE+KV+MLMKAV+ERDYEI S KNHIESHD  ESSHT  +K+  +
Subjt:  MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKSKTR

A0A5A7TQZ3 Ty3-gypsy retrotransposon protein2.4e-0953.52Show/hide
Query:  MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKSKTRERLTCKKVSLNI
        MM+ V TS  RM+ LE+K++ML+KAV+ R+YEI S KNHIES D  ESSH  + +  T+ R  CKKV+  I
Subjt:  MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKSKTRERLTCKKVSLNI

A0A5A7VR36 Ty3-gypsy retrotransposon protein2.1e-1069.09Show/hide
Query:  MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVK
        M+  V TS  RMV LE+KV+M+MK V+ERDYEI S KNHIESHDV ESSHT+ VK
Subjt:  MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVK

A0A5D3C857 Ty3-gypsy retrotransposon protein1.1e-0966.07Show/hide
Query:  MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKS
        M+  V TS  RM  LE+KV+MLMKAV+ERDYEI S KNHIESHD  ESSHT  +K+
Subjt:  MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGGGATGATGGTTGGCGTGGGTACAAGCGGAAAAAGAATGGTTAGATTGGAAAGAAAAGTGAGCATGTTGATGAAAGCGGTCAAAGAGAGAGATTATGAAATTGT
CTCTCAAAAGAATCACATAGAAAGTCATGATGTTGTTGAATCGAGTCACACATTTGTCGTAAAGAGTAAGACAAGGGAAAGACTGACATGCAAGAAAGTCAGCCTCAACA
TTCCACTTCTATTGCTTCAATGCCCGTCCAACAACTTCAAGATATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGGGATGATGGTTGGCGTGGGTACAAGCGGAAAAAGAATGGTTAGATTGGAAAGAAAAGTGAGCATGTTGATGAAAGCGGTCAAAGAGAGAGATTATGAAATTGT
CTCTCAAAAGAATCACATAGAAAGTCATGATGTTGTTGAATCGAGTCACACATTTGTCGTAAAGAGTAAGACAAGGGAAAGACTGACATGCAAGAAAGTCAGCCTCAACA
TTCCACTTCTATTGCTTCAATGCCCGTCCAACAACTTCAAGATATGA
Protein sequenceShow/hide protein sequence
MFGMMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKSKTRERLTCKKVSLNIPLLLLQCPSNNFKI