CuGenDBv2

Gene ID	Tan0003213
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG03:15061921..15062574
RNA-Seq Expression	Tan0003213
Synteny	Tan0003213
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]

7.7e-72

66.33

Show/hide

Query:  MSSAIIALLAYDKLVGDNYQSWKNNINTILVTDDIKLVLSEECPQMPGSTASRSVRDAHDRWIRANEKAKVYIIVSMSDVLAKKHELMVSAKEIMESLQK
        M+SA + +LA DKL G+NY SWKN INT+L+ DD++ VL EECPQ+P + A+R+VR+ ++RW +ANEKA+ YI+ S+S+VLAKKHE M++A+EIM+SLQ+
Subjt:  MSSAIIALLAYDKLVGDNYQSWKNNINTILVTDDIKLVLSEECPQMPGSTASRSVRDAHDRWIRANEKAKVYIIVSMSDVLAKKHELMVSAKEIMESLQK

Query:  MFGQLSFQVRHDSLKYVFNAWMKEGSSVREHVLDMMTHFNLSEMNGASIDESSQVSFILETLPKSFLQFRSNVVMNKISYTLTTLLNELQNFQSLKRVR
        MFGQ S+Q++HD+LKY++NA M EG+SVREHVL+MM HFN++EMNGA IDE+SQVSFILE+LP+SFLQFRSN VMNKI+YTLTTLLNELQ F+SL +++
Subjt:  MFGQLSFQVRHDSLKYVFNAWMKEGSSVREHVLDMMTHFNLSEMNGASIDESSQVSFILETLPKSFLQFRSNVVMNKISYTLTTLLNELQNFQSLKRVR

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

7.7e-72

66.33

Show/hide

Query:  MSSAIIALLAYDKLVGDNYQSWKNNINTILVTDDIKLVLSEECPQMPGSTASRSVRDAHDRWIRANEKAKVYIIVSMSDVLAKKHELMVSAKEIMESLQK
        M+SA + +LA DKL G+NY SWKN INT+L+ DD++ VL EECPQ+P + A+R+VR+ ++RW +ANEKA+ YI+ S+S+VLAKKHE M++A+EIM+SLQ+
Subjt:  MSSAIIALLAYDKLVGDNYQSWKNNINTILVTDDIKLVLSEECPQMPGSTASRSVRDAHDRWIRANEKAKVYIIVSMSDVLAKKHELMVSAKEIMESLQK

Query:  MFGQLSFQVRHDSLKYVFNAWMKEGSSVREHVLDMMTHFNLSEMNGASIDESSQVSFILETLPKSFLQFRSNVVMNKISYTLTTLLNELQNFQSLKRVR
        MFGQ S+Q++HD+LKY++NA M EG+SVREHVL+MM HFN++EMNGA IDE+SQVSFILE+LP+SFLQFRSN VMNKI+YTLTTLLNELQ F+SL +++
Subjt:  MFGQLSFQVRHDSLKYVFNAWMKEGSSVREHVLDMMTHFNLSEMNGASIDESSQVSFILETLPKSFLQFRSNVVMNKISYTLTTLLNELQNFQSLKRVR

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

7.7e-72

66.33

Show/hide

Query:  MSSAIIALLAYDKLVGDNYQSWKNNINTILVTDDIKLVLSEECPQMPGSTASRSVRDAHDRWIRANEKAKVYIIVSMSDVLAKKHELMVSAKEIMESLQK
        M+SA + +LA DKL G+NY SWKN INT+L+ DD++ VL EECPQ+P + A+R+VR+ ++RW +ANEKA+ YI+ S+S+VLAKKHE M++A+EIM+SLQ+
Subjt:  MSSAIIALLAYDKLVGDNYQSWKNNINTILVTDDIKLVLSEECPQMPGSTASRSVRDAHDRWIRANEKAKVYIIVSMSDVLAKKHELMVSAKEIMESLQK

Query:  MFGQLSFQVRHDSLKYVFNAWMKEGSSVREHVLDMMTHFNLSEMNGASIDESSQVSFILETLPKSFLQFRSNVVMNKISYTLTTLLNELQNFQSLKRVR
        MFGQ S+Q++HD+LKY++NA M EG+SVREHVL+MM HFN++EMNGA IDE+SQVSFILE+LP+SFLQFRSN VMNKI+YTLTTLLNELQ F+SL +++
Subjt:  MFGQLSFQVRHDSLKYVFNAWMKEGSSVREHVLDMMTHFNLSEMNGASIDESSQVSFILETLPKSFLQFRSNVVMNKISYTLTTLLNELQNFQSLKRVR

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

7.7e-72

66.33

Show/hide

Query:  MSSAIIALLAYDKLVGDNYQSWKNNINTILVTDDIKLVLSEECPQMPGSTASRSVRDAHDRWIRANEKAKVYIIVSMSDVLAKKHELMVSAKEIMESLQK
        M+SA + +LA DKL G+NY SWKN INT+L+ DD++ VL EECPQ+P + A+R+VR+ ++RW +ANEKA+ YI+ S+S+VLAKKHE M++A+EIM+SLQ+
Subjt:  MSSAIIALLAYDKLVGDNYQSWKNNINTILVTDDIKLVLSEECPQMPGSTASRSVRDAHDRWIRANEKAKVYIIVSMSDVLAKKHELMVSAKEIMESLQK

Query:  MFGQLSFQVRHDSLKYVFNAWMKEGSSVREHVLDMMTHFNLSEMNGASIDESSQVSFILETLPKSFLQFRSNVVMNKISYTLTTLLNELQNFQSLKRVR
        MFGQ S+Q++HD+LKY++NA M EG+SVREHVL+MM HFN++EMNGA IDE+SQVSFILE+LP+SFLQFRSN VMNKI+YTLTTLLNELQ F+SL +++
Subjt:  MFGQLSFQVRHDSLKYVFNAWMKEGSSVREHVLDMMTHFNLSEMNGASIDESSQVSFILETLPKSFLQFRSNVVMNKISYTLTTLLNELQNFQSLKRVR

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

7.7e-72

66.33

Show/hide

Query:  MSSAIIALLAYDKLVGDNYQSWKNNINTILVTDDIKLVLSEECPQMPGSTASRSVRDAHDRWIRANEKAKVYIIVSMSDVLAKKHELMVSAKEIMESLQK
        M+SA + +LA DKL G+NY SWKN INT+L+ DD++ VL EECPQ+P + A+R+VR+ ++RW +ANEKA+ YI+ S+S+VLAKKHE M++A+EIM+SLQ+
Subjt:  MSSAIIALLAYDKLVGDNYQSWKNNINTILVTDDIKLVLSEECPQMPGSTASRSVRDAHDRWIRANEKAKVYIIVSMSDVLAKKHELMVSAKEIMESLQK

Query:  MFGQLSFQVRHDSLKYVFNAWMKEGSSVREHVLDMMTHFNLSEMNGASIDESSQVSFILETLPKSFLQFRSNVVMNKISYTLTTLLNELQNFQSLKRVR
        MFGQ S+Q++HD+LKY++NA M EG+SVREHVL+MM HFN++EMNGA IDE+SQVSFILE+LP+SFLQFRSN VMNKI+YTLTTLLNELQ F+SL +++
Subjt:  MFGQLSFQVRHDSLKYVFNAWMKEGSSVREHVLDMMTHFNLSEMNGASIDESSQVSFILETLPKSFLQFRSNVVMNKISYTLTTLLNELQNFQSLKRVR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

3.7e-72

66.33

Show/hide

Query:  MSSAIIALLAYDKLVGDNYQSWKNNINTILVTDDIKLVLSEECPQMPGSTASRSVRDAHDRWIRANEKAKVYIIVSMSDVLAKKHELMVSAKEIMESLQK
        M+SA + +LA DKL G+NY SWKN INT+L+ DD++ VL EECPQ+P + A+R+VR+ ++RW +ANEKA+ YI+ S+S+VLAKKHE M++A+EIM+SLQ+
Subjt:  MSSAIIALLAYDKLVGDNYQSWKNNINTILVTDDIKLVLSEECPQMPGSTASRSVRDAHDRWIRANEKAKVYIIVSMSDVLAKKHELMVSAKEIMESLQK

Query:  MFGQLSFQVRHDSLKYVFNAWMKEGSSVREHVLDMMTHFNLSEMNGASIDESSQVSFILETLPKSFLQFRSNVVMNKISYTLTTLLNELQNFQSLKRVR
        MFGQ S+Q++HD+LKY++NA M EG+SVREHVL+MM HFN++EMNGA IDE+SQVSFILE+LP+SFLQFRSN VMNKI+YTLTTLLNELQ F+SL +++
Subjt:  MFGQLSFQVRHDSLKYVFNAWMKEGSSVREHVLDMMTHFNLSEMNGASIDESSQVSFILETLPKSFLQFRSNVVMNKISYTLTTLLNELQNFQSLKRVR

A0A5A7TU93 Gag/pol protein

3.7e-72

66.33

Show/hide

Query:  MSSAIIALLAYDKLVGDNYQSWKNNINTILVTDDIKLVLSEECPQMPGSTASRSVRDAHDRWIRANEKAKVYIIVSMSDVLAKKHELMVSAKEIMESLQK
        M+SA + +LA DKL G+NY SWKN INT+L+ DD++ VL EECPQ+P + A+R+VR+ ++RW +ANEKA+ YI+ S+S+VLAKKHE M++A+EIM+SLQ+
Subjt:  MSSAIIALLAYDKLVGDNYQSWKNNINTILVTDDIKLVLSEECPQMPGSTASRSVRDAHDRWIRANEKAKVYIIVSMSDVLAKKHELMVSAKEIMESLQK

Query:  MFGQLSFQVRHDSLKYVFNAWMKEGSSVREHVLDMMTHFNLSEMNGASIDESSQVSFILETLPKSFLQFRSNVVMNKISYTLTTLLNELQNFQSLKRVR
        MFGQ S+Q++HD+LKY++NA M EG+SVREHVL+MM HFN++EMNGA IDE+SQVSFILE+LP+SFLQFRSN VMNKI+YTLTTLLNELQ F+SL +++
Subjt:  MFGQLSFQVRHDSLKYVFNAWMKEGSSVREHVLDMMTHFNLSEMNGASIDESSQVSFILETLPKSFLQFRSNVVMNKISYTLTTLLNELQNFQSLKRVR

A0A5A7TWB9 Gag/pol protein

3.7e-72

66.33

Show/hide

Query:  MSSAIIALLAYDKLVGDNYQSWKNNINTILVTDDIKLVLSEECPQMPGSTASRSVRDAHDRWIRANEKAKVYIIVSMSDVLAKKHELMVSAKEIMESLQK
        M+SA + +LA DKL G+NY SWKN INT+L+ DD++ VL EECPQ+P + A+R+VR+ ++RW +ANEKA+ YI+ S+S+VLAKKHE M++A+EIM+SLQ+
Subjt:  MSSAIIALLAYDKLVGDNYQSWKNNINTILVTDDIKLVLSEECPQMPGSTASRSVRDAHDRWIRANEKAKVYIIVSMSDVLAKKHELMVSAKEIMESLQK

Query:  MFGQLSFQVRHDSLKYVFNAWMKEGSSVREHVLDMMTHFNLSEMNGASIDESSQVSFILETLPKSFLQFRSNVVMNKISYTLTTLLNELQNFQSLKRVR
        MFGQ S+Q++HD+LKY++NA M EG+SVREHVL+MM HFN++EMNGA IDE+SQVSFILE+LP+SFLQFRSN VMNKI+YTLTTLLNELQ F+SL +++
Subjt:  MFGQLSFQVRHDSLKYVFNAWMKEGSSVREHVLDMMTHFNLSEMNGASIDESSQVSFILETLPKSFLQFRSNVVMNKISYTLTTLLNELQNFQSLKRVR

A0A5D3CPJ6 Gag/pol protein

3.7e-72

66.33

Show/hide

Query:  MSSAIIALLAYDKLVGDNYQSWKNNINTILVTDDIKLVLSEECPQMPGSTASRSVRDAHDRWIRANEKAKVYIIVSMSDVLAKKHELMVSAKEIMESLQK
        M+SA + +LA DKL G+NY SWKN INT+L+ DD++ VL EECPQ+P + A+R+VR+ ++RW +ANEKA+ YI+ S+S+VLAKKHE M++A+EIM+SLQ+
Subjt:  MSSAIIALLAYDKLVGDNYQSWKNNINTILVTDDIKLVLSEECPQMPGSTASRSVRDAHDRWIRANEKAKVYIIVSMSDVLAKKHELMVSAKEIMESLQK

Query:  MFGQLSFQVRHDSLKYVFNAWMKEGSSVREHVLDMMTHFNLSEMNGASIDESSQVSFILETLPKSFLQFRSNVVMNKISYTLTTLLNELQNFQSLKRVR
        MFGQ S+Q++HD+LKY++NA M EG+SVREHVL+MM HFN++EMNGA IDE+SQVSFILE+LP+SFLQFRSN VMNKI+YTLTTLLNELQ F+SL +++
Subjt:  MFGQLSFQVRHDSLKYVFNAWMKEGSSVREHVLDMMTHFNLSEMNGASIDESSQVSFILETLPKSFLQFRSNVVMNKISYTLTTLLNELQNFQSLKRVR

A0A5D3CSZ6 Gag/pol protein

3.7e-72

66.33

Show/hide

Query:  MSSAIIALLAYDKLVGDNYQSWKNNINTILVTDDIKLVLSEECPQMPGSTASRSVRDAHDRWIRANEKAKVYIIVSMSDVLAKKHELMVSAKEIMESLQK
        M+SA + +LA DKL G+NY SWKN INT+L+ DD++ VL EECPQ+P + A+R+VR+ ++RW +ANEKA+ YI+ S+S+VLAKKHE M++A+EIM+SLQ+
Subjt:  MSSAIIALLAYDKLVGDNYQSWKNNINTILVTDDIKLVLSEECPQMPGSTASRSVRDAHDRWIRANEKAKVYIIVSMSDVLAKKHELMVSAKEIMESLQK

Query:  MFGQLSFQVRHDSLKYVFNAWMKEGSSVREHVLDMMTHFNLSEMNGASIDESSQVSFILETLPKSFLQFRSNVVMNKISYTLTTLLNELQNFQSLKRVR
        MFGQ S+Q++HD+LKY++NA M EG+SVREHVL+MM HFN++EMNGA IDE+SQVSFILE+LP+SFLQFRSN VMNKI+YTLTTLLNELQ F+SL +++
Subjt:  MFGQLSFQVRHDSLKYVFNAWMKEGSSVREHVLDMMTHFNLSEMNGASIDESSQVSFILETLPKSFLQFRSNVVMNKISYTLTTLLNELQNFQSLKRVR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCTAGCGCAATAATAGCACTACTCGCGTATGATAAGTTAGTGGGAGATAATTACCAAAGTTGGAAAAACAACATTAACACGATTTTGGTAACTGACGACATAAAGCT
CGTGTTGTCTGAGGAGTGTCCTCAGATGCCGGGCTCGACCGCATCGCGAAGTGTTCGCGATGCGCATGATCGGTGGATCAGGGCAAATGAAAAGGCCAAGGTCTACATAA
TTGTCAGCATGTCTGATGTCTTGGCAAAGAAGCATGAGCTGATGGTCTCTGCCAAGGAGATCATGGAGTCCTTGCAGAAAATGTTTGGACAACTATCCTTTCAGGTCCGG
CATGACTCCCTCAAATACGTTTTCAACGCATGGATGAAGGAGGGGTCGTCTGTCCGTGAACATGTTCTAGACATGATGACCCACTTTAATCTGTCCGAGATGAACGGGGC
TTCGATCGACGAGTCGAGCCAGGTTAGTTTTATTTTGGAGACTCTTCCAAAGAGTTTCCTTCAGTTTCGTAGCAATGTTGTTATGAACAAAATTAGCTACACTCTGACTA
CCCTCCTCAATGAGCTACAAAATTTCCAATCCTTGAAAAGGGTAAGGAATCTGAGGCAAATGTTGCCTACAGGTCTTATCACAGGGGTTCGACCGCGGATTTAA

mRNA sequence

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Protein sequence

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MSSAIIALLAYDKLVGDNYQSWKNNINTILVTDDIKLVLSEECPQMPGSTASRSVRDAHDRWIRANEKAKVYIIVSMSDVLAKKHELMVSAKEIMESLQKMFGQLSFQVR
HDSLKYVFNAWMKEGSSVREHVLDMMTHFNLSEMNGASIDESSQVSFILETLPKSFLQFRSNVVMNKISYTLTTLLNELQNFQSLKRVRNLRQMLPTGLITGVRPRI

Tan0003213 (gene) of Snake gourd v1 genome