CuGenDBv2

Gene ID	Tan0003220
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ty3-gypsy retrotransposon protein
Genome location	LG04:75260142..75260390
RNA-Seq Expression	Tan0003220
Synteny	Tan0003220
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR005162 - Retrotransposon gag domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025354.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.3e-34

84.15

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Query:  MPTGYQPPKFQQFDGKRNPKQHVAHFVETCKNARACGDLLVKQFVHTLKGNAFDWYTDLEPKTIDSWEQFEREFLNRFYSTR
        MP GYQPPKFQQFDGK NPKQHVAHF+ETC+ A   GDLLVKQFV TLKGNAFDWYTDLEP++IDSWEQ ER+FLNRFYSTR
Subjt:  MPTGYQPPKFQQFDGKRNPKQHVAHFVETCKNARACGDLLVKQFVHTLKGNAFDWYTDLEPKTIDSWEQFEREFLNRFYSTR

KAA0046824.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.3e-34

84.15

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Query:  MPTGYQPPKFQQFDGKRNPKQHVAHFVETCKNARACGDLLVKQFVHTLKGNAFDWYTDLEPKTIDSWEQFEREFLNRFYSTR
        MP GYQPPKFQQFDGK NPKQHVAHF+ETC+ A   GDLLVKQFV TLKGNAFDWYTDLEP++IDSWEQ ER+FLNRFYSTR
Subjt:  MPTGYQPPKFQQFDGKRNPKQHVAHFVETCKNARACGDLLVKQFVHTLKGNAFDWYTDLEPKTIDSWEQFEREFLNRFYSTR

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]

5.3e-34

84.15

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Query:  MPTGYQPPKFQQFDGKRNPKQHVAHFVETCKNARACGDLLVKQFVHTLKGNAFDWYTDLEPKTIDSWEQFEREFLNRFYSTR
        MP GYQPPKFQQFDGK NPKQHVAHF+ETC+ A   GDLLVKQFV TLKGNAFDWYTDLEP++IDSWEQ ER+FLNRFYSTR
Subjt:  MPTGYQPPKFQQFDGKRNPKQHVAHFVETCKNARACGDLLVKQFVHTLKGNAFDWYTDLEPKTIDSWEQFEREFLNRFYSTR

KAA0053464.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]

5.3e-34

84.15

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Query:  MPTGYQPPKFQQFDGKRNPKQHVAHFVETCKNARACGDLLVKQFVHTLKGNAFDWYTDLEPKTIDSWEQFEREFLNRFYSTR
        MP GYQPPKFQQFDGK NPKQHVAHF+ETC+ A   GDLLVKQFV TLKGNAFDWYTDLEP++IDSWEQ ER+FLNRFYSTR
Subjt:  MPTGYQPPKFQQFDGKRNPKQHVAHFVETCKNARACGDLLVKQFVHTLKGNAFDWYTDLEPKTIDSWEQFEREFLNRFYSTR

KAA0055534.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.2e-33

82.93

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Query:  MPTGYQPPKFQQFDGKRNPKQHVAHFVETCKNARACGDLLVKQFVHTLKGNAFDWYTDLEPKTIDSWEQFEREFLNRFYSTR
        MP GYQPPKFQQFDGK NPKQHVAHF+ETC+ A   GDLLVKQFV TLKGNAFDWY DLEPK+ID+WEQ ER+FLNRFYSTR
Subjt:  MPTGYQPPKFQQFDGKRNPKQHVAHFVETCKNARACGDLLVKQFVHTLKGNAFDWYTDLEPKTIDSWEQFEREFLNRFYSTR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SI89 Ty3-gypsy retrotransposon protein

2.6e-34

84.15

Show/hide

Query:  MPTGYQPPKFQQFDGKRNPKQHVAHFVETCKNARACGDLLVKQFVHTLKGNAFDWYTDLEPKTIDSWEQFEREFLNRFYSTR
        MP GYQPPKFQQFDGK NPKQHVAHF+ETC+ A   GDLLVKQFV TLKGNAFDWYTDLEP++IDSWEQ ER+FLNRFYSTR
Subjt:  MPTGYQPPKFQQFDGKRNPKQHVAHFVETCKNARACGDLLVKQFVHTLKGNAFDWYTDLEPKTIDSWEQFEREFLNRFYSTR

A0A5A7TUS2 Ty3-gypsy retrotransposon protein

2.6e-34

84.15

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Query:  MPTGYQPPKFQQFDGKRNPKQHVAHFVETCKNARACGDLLVKQFVHTLKGNAFDWYTDLEPKTIDSWEQFEREFLNRFYSTR
        MP GYQPPKFQQFDGK NPKQHVAHF+ETC+ A   GDLLVKQFV TLKGNAFDWYTDLEP++IDSWEQ ER+FLNRFYSTR
Subjt:  MPTGYQPPKFQQFDGKRNPKQHVAHFVETCKNARACGDLLVKQFVHTLKGNAFDWYTDLEPKTIDSWEQFEREFLNRFYSTR

A0A5A7TZU9 Ribonuclease H

2.6e-34

84.15

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Query:  MPTGYQPPKFQQFDGKRNPKQHVAHFVETCKNARACGDLLVKQFVHTLKGNAFDWYTDLEPKTIDSWEQFEREFLNRFYSTR
        MP GYQPPKFQQFDGK NPKQHVAHF+ETC+ A   GDLLVKQFV TLKGNAFDWYTDLEP++IDSWEQ ER+FLNRFYSTR
Subjt:  MPTGYQPPKFQQFDGKRNPKQHVAHFVETCKNARACGDLLVKQFVHTLKGNAFDWYTDLEPKTIDSWEQFEREFLNRFYSTR

A0A5A7UE14 Retrotransposon protein putative ty3-gypsy sub-class

2.6e-34

84.15

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Query:  MPTGYQPPKFQQFDGKRNPKQHVAHFVETCKNARACGDLLVKQFVHTLKGNAFDWYTDLEPKTIDSWEQFEREFLNRFYSTR
        MP GYQPPKFQQFDGK NPKQHVAHF+ETC+ A   GDLLVKQFV TLKGNAFDWYTDLEP++IDSWEQ ER+FLNRFYSTR
Subjt:  MPTGYQPPKFQQFDGKRNPKQHVAHFVETCKNARACGDLLVKQFVHTLKGNAFDWYTDLEPKTIDSWEQFEREFLNRFYSTR

A0A5A7UK68 Ty3-gypsy retrotransposon protein

5.8e-34

82.93

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Query:  MPTGYQPPKFQQFDGKRNPKQHVAHFVETCKNARACGDLLVKQFVHTLKGNAFDWYTDLEPKTIDSWEQFEREFLNRFYSTR
        MP GYQPPKFQQFDGK NPKQHVAHF+ETC+ A   GDLLVKQFV TLKGNAFDWY DLEPK+ID+WEQ ER+FLNRFYSTR
Subjt:  MPTGYQPPKFQQFDGKRNPKQHVAHFVETCKNARACGDLLVKQFVHTLKGNAFDWYTDLEPKTIDSWEQFEREFLNRFYSTR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCCCACAGGGTACCAACCTCCAAAATTCCAGCAGTTCGACGGGAAGCGCAACCCAAAGCAACACGTTGCACACTTCGTTGAGACTTGCAAAAATGCAAGGGCGTGCGG
TGACCTCCTGGTGAAGCAATTTGTGCATACCTTGAAAGGAAATGCTTTTGACTGGTACACTGACTTAGAGCCAAAAACGATTGACAGCTGGGAACAATTCGAGAGAGAAT
TCCTAAATCGCTTCTACAGTACGAGGTGA

mRNA sequence

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Protein sequence

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MPTGYQPPKFQQFDGKRNPKQHVAHFVETCKNARACGDLLVKQFVHTLKGNAFDWYTDLEPKTIDSWEQFEREFLNRFYSTR

Tan0003220 (gene) of Snake gourd v1 genome