; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0003229 (gene) of Snake gourd v1 genome

Gene IDTan0003229
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionProtein transport protein Sec61 subunit beta
Genome locationLG02:59629566..59632248
RNA-Seq ExpressionTan0003229
SyntenyTan0003229
Gene Ontology termsGO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation (biological process)
GO:0031204 - posttranslational protein targeting to membrane, translocation (biological process)
GO:0005784 - Sec61 translocon complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR016482 - Protein transport protein SecG/Sec61-beta/Sbh
IPR030671 - Protein transport Sec61-beta/Sbh


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008437786.1 PREDICTED: protein transport protein Sec61 subunit beta [Cucumis melo]8.7e-1682.14Show/hide
Query:  LRRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE
        +RRRRT S GTSGG  GTMLQFYTDDA GLKISPNVVLVMSIGFI F A+LHVMG+
Subjt:  LRRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE

XP_011650635.1 protein transport protein Sec61 subunit beta [Cucumis sativus]8.7e-1682.14Show/hide
Query:  LRRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE
        +RRRRT S GTSGG  GTMLQFYTDDA GLKISPNVVLVMSIGFI F A+LHVMG+
Subjt:  LRRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE

XP_022146520.1 protein transport protein Sec61 subunit beta-like [Momordica charantia]6.6e-1683.93Show/hide
Query:  LRRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE
        +RRRRT S GTSGG  GTMLQFYTDDA GLKISPNVVLVMSIGFI F AILHVMG+
Subjt:  LRRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE

XP_022950482.1 protein transport protein Sec61 subunit beta-like [Cucurbita moschata]6.6e-1683.93Show/hide
Query:  LRRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE
        +RRRRT S GTSGG  GTMLQFYTDDA GLKISPNVVLVMSIGFI F AILHVMG+
Subjt:  LRRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE

XP_038875187.1 protein transport protein Sec61 subunit beta-like isoform X1 [Benincasa hispida]6.6e-1683.93Show/hide
Query:  LRRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE
        +RRRRT S GTSGG  GTMLQFYTDDA GLKISPNVVLVMSIGFI F AILHVMG+
Subjt:  LRRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE

TrEMBL top hitse value%identityAlignment
A0A6J1CXG1 Protein transport protein Sec61 subunit beta3.2e-1683.93Show/hide
Query:  LRRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE
        +RRRRT S GTSGG  GTMLQFYTDDA GLKISPNVVLVMSIGFI F AILHVMG+
Subjt:  LRRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE

A0A6J1EFZ9 Protein transport protein Sec61 subunit beta3.2e-1683.93Show/hide
Query:  LRRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE
        +RRRRT S GTSGG  GTMLQFYTDDA GLKISPNVVLVMSIGFI F AILHVMG+
Subjt:  LRRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE

A0A6J1GEY3 Protein transport protein Sec61 subunit beta3.2e-1683.93Show/hide
Query:  LRRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE
        +RRRRT S GTSGG  GTMLQFYTDDA GLKISPNVVLVMSIGFI F AILHVMG+
Subjt:  LRRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE

A0A6J1IH25 Protein transport protein Sec61 subunit beta3.2e-1683.93Show/hide
Query:  LRRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE
        +RRRRT S GTSGG  GTMLQFYTDDA GLKISPNVVLVMSIGFI F AILHVMG+
Subjt:  LRRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE

A0A6J1J088 Protein transport protein Sec61 subunit beta3.2e-1683.93Show/hide
Query:  LRRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE
        +RRRRT S GTSGG  GTMLQFYTDDA GLKISPNVVLVMSIGFI F AILHVMG+
Subjt:  LRRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE

SwissProt top hitse value%identityAlignment
A8I6P9 Protein transport protein Sec61 subunit beta2.2e-0648.28Show/hide
Query:  LRRRRTKSLGTSGGEPG--TMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE
        LRRR  +  G SG        + FYTDD  G K+SP VV+ MS+ FI F  ILHV+G+
Subjt:  LRRRRTKSLGTSGGEPG--TMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE

O43002 Protein transport protein sec61 subunit beta7.1e-0543.75Show/hide
Query:  KSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVM
        ++ G  G  P T+L+ YTD+A G K+ P VV+V+S+GFI    +LH++
Subjt:  KSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVM

P38389 Protein transport protein Sec61 subunit beta1.7e-1468.33Show/hide
Query:  LRRRRTKS----LGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE
        +RRR+  S     G SGG  G+MLQFYTDDA GLKISPNVVL+MSIGFI F A+LHVMG+
Subjt:  LRRRRTKS----LGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE

Q54YR4 Protein transport protein Sec61 subunit beta1.9e-0545.28Show/hide
Query:  RRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE
        +R  +    GG   +M++FY++DA GLK+ P  VL MS+ FI F  ILH+MG+
Subjt:  RRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE

Q9HFC7 Protein transport protein Sec61 subunit beta5.8e-0745.61Show/hide
Query:  RRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGENS
        R   T+S+G +GG   TML+ YTD++ GLK+ P VV+V+S+GFI     LH++ + S
Subjt:  RRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGENS

Arabidopsis top hitse value%identityAlignment
AT2G45070.1 Preprotein translocase Sec, Sec61-beta subunit protein1.2e-1568.33Show/hide
Query:  LRRRRTKS----LGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE
        +RRR+  S     G SGG  G+MLQFYTDDA GLKISPNVVL+MSIGFI F A+LHVMG+
Subjt:  LRRRRTKS----LGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE

AT2G45070.2 Preprotein translocase Sec, Sec61-beta subunit protein1.2e-1568.33Show/hide
Query:  LRRRRTKS----LGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE
        +RRR+  S     G SGG  G+MLQFYTDDA GLKISPNVVL+MSIGFI F A+LHVMG+
Subjt:  LRRRRTKS----LGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE

AT2G45070.3 Preprotein translocase Sec, Sec61-beta subunit protein1.2e-1568.33Show/hide
Query:  LRRRRTKS----LGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE
        +RRR+  S     G SGG  G+MLQFYTDDA GLKISPNVVL+MSIGFI F A+LHVMG+
Subjt:  LRRRRTKS----LGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE

AT2G45070.4 Preprotein translocase Sec, Sec61-beta subunit protein1.2e-1568.33Show/hide
Query:  LRRRRTKS----LGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE
        +RRR+  S     G SGG  G+MLQFYTDDA GLKISPNVVL+MSIGFI F A+LHVMG+
Subjt:  LRRRRTKS----LGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE

AT3G60540.1 Preprotein translocase Sec, Sec61-beta subunit protein1.6e-1569.09Show/hide
Query:  RRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE
        RR+      ++GG  GTMLQFYTDDA GLKISPNVVL+MSIGFI F A+LHVMG+
Subjt:  RRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACTATTGTTTTTGAAGATTGTAATTGTTCTGCGCAGGAGAAGGACGAAAAGTTTGGGCACATCTGGAGGGGAACCTGGAACAATGCTGCAATTTTACACGGATGA
TGCTCATGGCCTCAAGATATCCCCCAACGTTGTTCTCGTCATGAGTATTGGTTTCATTGTGTTTTTTGCCATTCTCCATGTCATGGGTGAGAATTCAGTTGGGTCAGGGC
TCGGTTGGCGAGGTAATCAGGAACATGCTTAA
mRNA sequenceShow/hide mRNA sequence
CCCATTTGATCGTCTTCCTCCCATCGAGTATGAAATCTCCCTCCAACACTCGTCTCCCAACTTTGCTCCGACACTCTTCCTGATTCCTCTACACTCGTCTCCCAACTTTG
CTCCTCATTGTCGTATCCCTGCAGGTCTTCACTCCTGCGCACTCTTTCCCCGCTTCATCCCCTCTGCAATTTCCTCTCTCCCCAATCTCCAAATCCTCCGATCCAATTCC
TTCACCGAATCGGAAGGGAAATTTCACCCAAAGCTCCCCCAAAAGGGGTAGAGGAATGATTTTGATCGACTGTGTCGATTTTCTTGATGGGTTCTTGCCATTCGTCTTCT
AGAGGGCGGCGATCAACAACAACGCTTATTCTACCGCTATAGAGGCGGTGATGGCGGTGGCAGCTGAGGCTCTGACGATTTCTACTACAACGTCCTTTTCTTCTTCTTCA
TCTTCTTCATATTCGTACTCTATGACCAGTAGGCCGCGTTGGTGGAAGAAGAATTCGACTAAAACTTTTGGGGTTGCGGTTTGTTAAGAGAAGGTCCATGAATTTGAGGT
TCCGGAGAGGATTTGCTCTAATGGGTCATCGAGAGTTGCTTGTTTGTATACACAACAGAGAAAGAAAGGGGCTAATCAAGACGCCATTGTTGTGCAGGAGATTAGCGGTT
TATTGTTGTTCCCACATTCTTACATCCTTTGTTCTTTGTTTTGTGTTGATTGATGATGCCCCTTTAACGCTGGATTTCATTTTGTGTTTGAGGTTACATTATATCATGTG
AAAGTAGTTGTTTGAGGGTGGATATGGAGATTTTTCTAATTTTTAGGATAATGTTAGAGCTTTTGCTTCCTTATGGAACTATTGTTTTTGAAGATTGTAATTGTTCTGCG
CAGGAGAAGGACGAAAAGTTTGGGCACATCTGGAGGGGAACCTGGAACAATGCTGCAATTTTACACGGATGATGCTCATGGCCTCAAGATATCCCCCAACGTTGTTCTCG
TCATGAGTATTGGTTTCATTGTGTTTTTTGCCATTCTCCATGTCATGGGTGAGAATTCAGTTGGGTCAGGGCTCGGTTGGCGAGGTAATCAGGAACATGCTTAAGGCGGA
GGAAGTTGGTGCTTTTTACAAGGT
Protein sequenceShow/hide protein sequence
MELLFLKIVIVLRRRRTKSLGTSGGEPGTMLQFYTDDAHGLKISPNVVLVMSIGFIVFFAILHVMGENSVGSGLGWRGNQEHA