CuGenDBv2

Gene ID	Tan0003231
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA/RNA polymerases superfamily protein
Genome location	LG10:24560151..24560354
RNA-Seq Expression	Tan0003231
Synteny	Tan0003231
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0056353.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

2.2e-22

84.38

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Query:  MNFLFTHYASMDCHKKEVVFKKPGLVEVVFRGERKIIPTSLISALKAEKLLRKGCMAFLAHVVE
        M+FLFTHYASM+CH+KEV+F+KP   EVVFRGERKIIPTSLISALK EKLLRKGC+AFLAHVVE
Subjt:  MNFLFTHYASMDCHKKEVVFKKPGLVEVVFRGERKIIPTSLISALKAEKLLRKGCMAFLAHVVE

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]

1.6e-23

89.06

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Query:  MNFLFTHYASMDCHKKEVVFKKPGLVEVVFRGERKIIPTSLISALKAEKLLRKGCMAFLAHVVE
        M+FLFTHYASM+CHKKEV F+KPG  EVVFRGERKIIPTSLISALKAEKLLRKGC+AFLAHVVE
Subjt:  MNFLFTHYASMDCHKKEVVFKKPGLVEVVFRGERKIIPTSLISALKAEKLLRKGCMAFLAHVVE

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]

1.6e-23

89.06

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Query:  MNFLFTHYASMDCHKKEVVFKKPGLVEVVFRGERKIIPTSLISALKAEKLLRKGCMAFLAHVVE
        M+FLFTHYASM+CHKKEV F+KPG  EVVFRGERKIIPTSLISALKAEKLLRKGC+AFLAHVVE
Subjt:  MNFLFTHYASMDCHKKEVVFKKPGLVEVVFRGERKIIPTSLISALKAEKLLRKGCMAFLAHVVE

TYK29162.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

2.2e-22

84.38

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Query:  MNFLFTHYASMDCHKKEVVFKKPGLVEVVFRGERKIIPTSLISALKAEKLLRKGCMAFLAHVVE
        M+FLFTHYASM+CH+KEV+F+KP   EVVFRGERKIIPTSLISALK EKLLRKGC+AFLAHVVE
Subjt:  MNFLFTHYASMDCHKKEVVFKKPGLVEVVFRGERKIIPTSLISALKAEKLLRKGCMAFLAHVVE

XP_038877048.1 uncharacterized protein LOC120069376 [Benincasa hispida]

1.7e-22

84.38

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Query:  MNFLFTHYASMDCHKKEVVFKKPGLVEVVFRGERKIIPTSLISALKAEKLLRKGCMAFLAHVVE
        M+F FTHYASMDCH+KEV F+KPGL E+VFRGE+KIIPTSLISALKAEKLLRKGC +FLAHVVE
Subjt:  MNFLFTHYASMDCHKKEVVFKKPGLVEVVFRGERKIIPTSLISALKAEKLLRKGCMAFLAHVVE

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E0X6 uncharacterized protein LOC107991320

1.1e-22

84.38

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Query:  MNFLFTHYASMDCHKKEVVFKKPGLVEVVFRGERKIIPTSLISALKAEKLLRKGCMAFLAHVVE
        M+FLFTHYASM+CH+KEV+F+KP   EVVFRGERKIIPTSLISALK EKLLRKGC+AFLAHVVE
Subjt:  MNFLFTHYASMDCHKKEVVFKKPGLVEVVFRGERKIIPTSLISALKAEKLLRKGCMAFLAHVVE

A0A5A7UKD3 DNA/RNA polymerases superfamily protein

1.1e-22

84.38

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Query:  MNFLFTHYASMDCHKKEVVFKKPGLVEVVFRGERKIIPTSLISALKAEKLLRKGCMAFLAHVVE
        M+FLFTHYASM+CH+KEV+F+KP   EVVFRGERKIIPTSLISALK EKLLRKGC+AFLAHVVE
Subjt:  MNFLFTHYASMDCHKKEVVFKKPGLVEVVFRGERKIIPTSLISALKAEKLLRKGCMAFLAHVVE

A0A5A7V9N3 Reverse transcriptase

7.5e-24

89.06

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Query:  MNFLFTHYASMDCHKKEVVFKKPGLVEVVFRGERKIIPTSLISALKAEKLLRKGCMAFLAHVVE
        M+FLFTHYASM+CHKKEV F+KPG  EVVFRGERKIIPTSLISALKAEKLLRKGC+AFLAHVVE
Subjt:  MNFLFTHYASMDCHKKEVVFKKPGLVEVVFRGERKIIPTSLISALKAEKLLRKGCMAFLAHVVE

A0A5D3DSY7 Putative Retrotransposon protein

7.5e-24

89.06

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Query:  MNFLFTHYASMDCHKKEVVFKKPGLVEVVFRGERKIIPTSLISALKAEKLLRKGCMAFLAHVVE
        M+FLFTHYASM+CHKKEV F+KPG  EVVFRGERKIIPTSLISALKAEKLLRKGC+AFLAHVVE
Subjt:  MNFLFTHYASMDCHKKEVVFKKPGLVEVVFRGERKIIPTSLISALKAEKLLRKGCMAFLAHVVE

A0A5D3DZW6 DNA/RNA polymerases superfamily protein

1.1e-22

84.38

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Query:  MNFLFTHYASMDCHKKEVVFKKPGLVEVVFRGERKIIPTSLISALKAEKLLRKGCMAFLAHVVE
        M+FLFTHYASM+CH+KEV+F+KP   EVVFRGERKIIPTSLISALK EKLLRKGC+AFLAHVVE
Subjt:  MNFLFTHYASMDCHKKEVVFKKPGLVEVVFRGERKIIPTSLISALKAEKLLRKGCMAFLAHVVE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAATTTCTTATTCACTCATTATGCTTCCATGGATTGCCATAAAAAAGAAGTTGTTTTCAAGAAACCAGGATTAGTTGAAGTGGTTTTCAGGGGTGAAAGGAAGATTAT
CCCTACGAGCTTGATTTCAGCATTAAAAGCTGAAAAGTTGTTGAGGAAAGGTTGCATGGCATTTCTTGCACACGTAGTGGAGTGCGGAGGATAA

mRNA sequence

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Protein sequence

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MNFLFTHYASMDCHKKEVVFKKPGLVEVVFRGERKIIPTSLISALKAEKLLRKGCMAFLAHVVECGG

Tan0003231 (gene) of Snake gourd v1 genome