CuGenDBv2

Gene ID	Tan0003375
Organism	Trichosanthes anguina (Snake gourd v1)
Description	60S ribosomal protein L39
Genome location	LG02:95754376..95755592
RNA-Seq Expression	Tan0003375
Synteny	Tan0003375
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000077 - Ribosomal protein L39e IPR020083 - Ribosomal protein L39e, conserved site IPR023626 - Ribosomal protein L39e domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6585491.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. sororia]

6.5e-23

100

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Query:  SRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        SRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  SRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KAG7024434.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.5e-23

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Query:  LAAGSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        LAA  R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  LAAGSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KAG7029487.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.7e-26

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Query:  VFACCSVFEALAAGSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        V   C +F ALAAGSR SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  VFACCSVFEALAAGSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

PON37200.1 Ribosomal protein [Trema orientale]

2.7e-21

96.36

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Query:  RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

XP_022962571.1 uncharacterized protein LOC111462968 [Cucurbita moschata]

3.7e-26

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Query:  VFACCSVFEALAAGSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        V   C +F ALAAGSR SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  VFACCSVFEALAAGSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LM35 Uncharacterized protein

8.9e-26

94.03

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Query:  CSVFEAL-AAGSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        CS+F AL AAG RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  CSVFEAL-AAGSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A2P5AKY6 Ribosomal protein

1.3e-21

96.36

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Query:  RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A2P5ANB0 Ribosomal protein

1.3e-21

96.36

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Query:  RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A6J1HDM7 uncharacterized protein LOC111462968

1.8e-26

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Query:  VFACCSVFEALAAGSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        V   C +F ALAAGSR SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  VFACCSVFEALAAGSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

M0SEA6 Uncharacterized protein

2.3e-21

94.55

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Query:  RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

SwissProt top hits

e value

%identity

Alignment

P51424 60S ribosomal protein L39-1

9.8e-22

94.12

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

P51425 60S ribosomal protein L39

2.0e-22

96.08

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

P51426 60S ribosomal protein L39-2

2.0e-22

96.08

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Q5SMI4 60S ribosomal protein L39-3

5.7e-22

94.12

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Q6KAJ8 60S ribosomal protein L39-1

2.0e-22

96.08

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Arabidopsis top hits

e value

%identity

Alignment

AT2G25210.1 Ribosomal protein L39 family protein

8.0e-19

97.67

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Query:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

AT3G02190.1 Ribosomal protein L39 family protein

2.2e-21

90.2

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

AT4G31985.1 Ribosomal protein L39 family protein

7.0e-23

94.12

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Sequences

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CDS sequence

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mRNA sequence

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ATGTGTAAAGAGGTTTTTGCTTGTTGTTCGGTGTTCGAAGCCCTCGCAGCCGGTTCTCGAATCTCCAAGATGCCGTCTCACAAGACCTTTAGGATCAAGAAGAAGTTGGC
GAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGCCTGAGGACCGACAACACCATCAGGTACAATGCGAAGAGAAGGCACTGGCGCCGCACTAAGCTCGGAT
TTTGAGGTGCTTTGCTTGTGATTTGCTCTTCAATCCTTCGTTGTTTTGAACTTGTTAAATCGTTAGTTGTGGAGAAGACAACGAATATAGAGCTAGATTTTTGAATTTTT
GTCTCTCAATTAAGAACTTATCGAAGAGAAACCTCTGTAGTATTTAGGCTTACTTCTATTTTAAATATATATCTGGATCAGTTTCGATTCATATGTTAATTTCGTGTTCG
TTTCGTTTATTACTATCTATTTCAGTTTGGGGCCTTTTCTTCTTACACTAGTGGGAGTTTTGTTCTAGTCTTGATCGTTCAAGTATTCATATGGATGTGAGGAGTTTGGT
ATCTGCTAGGTTGTTGATTTATAAATTGTTTTTTGATTCATATATTAATTGATTGGGTGCTTTAGTTTGCATATTTGATCAAATTTCTCTCCTTGAAATTTGTTGTATGA
TTTATTTCCCTGTCCTTGTGGACATTTTTGTTTGAAG

Protein sequence

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MCKEVFACCSVFEALAAGSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Tan0003375 (gene) of Snake gourd v1 genome