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Tan0003404 (gene) of Snake gourd v1 genome

Gene IDTan0003404
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRPM1-interacting protein 4 (RIN4) family protein
Genome locationLG01:19621921..19624521
RNA-Seq ExpressionTan0003404
SyntenyTan0003404
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5461208.1 hypothetical protein F2P56_021025, partial [Juglans regia]3.7e-2984.42Show/hide
Query:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKV-SQAKRAADYGKPQSKKWFCCIQSPPTQS
        MS KGQPLPKFGEWDVN+PASAEGFTVIFNKARDEKKTGG PESPGKV SQ+K A D GKPQ+KKWFCC+Q PPT S
Subjt:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKV-SQAKRAADYGKPQSKKWFCCIQSPPTQS

XP_004148258.1 protein NOI4 [Cucumis sativus]1.0e-3189.47Show/hide
Query:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQAKRAADYGKPQSKKWFCCIQSPPTQS
        MS KGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGK  +AK  AD GKPQ+KKWFCCIQSPPTQS
Subjt:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQAKRAADYGKPQSKKWFCCIQSPPTQS

XP_008449047.1 PREDICTED: RPM1-interacting protein 4-like [Cucumis melo]3.5e-3290.79Show/hide
Query:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQAKRAADYGKPQSKKWFCCIQSPPTQS
        MS KGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGK  QAK  AD GKPQ+KKWFCCIQSPPTQS
Subjt:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQAKRAADYGKPQSKKWFCCIQSPPTQS

XP_022144004.1 RPM1-interacting protein 4-like isoform X1 [Momordica charantia]7.4e-3088.16Show/hide
Query:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQAKRAADYGKPQSKKWFCCIQSPPTQS
        MS KGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQ ES  K +Q KR AD GKPQSKKWFCCIQSPPTQS
Subjt:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQAKRAADYGKPQSKKWFCCIQSPPTQS

XP_038905925.1 protein NOI4-like [Benincasa hispida]5.7e-3088.16Show/hide
Query:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQAKRAADYGKPQSKKWFCCIQSPPTQS
        MS KGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGK  QAK AAD GKPQ+KKWFCCI+ PPT+S
Subjt:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQAKRAADYGKPQSKKWFCCIQSPPTQS

TrEMBL top hitse value%identityAlignment
A0A0A0L7F7 AvrRpt-cleavage domain-containing protein5.0e-3289.47Show/hide
Query:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQAKRAADYGKPQSKKWFCCIQSPPTQS
        MS KGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGK  +AK  AD GKPQ+KKWFCCIQSPPTQS
Subjt:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQAKRAADYGKPQSKKWFCCIQSPPTQS

A0A1S3BL66 RPM1-interacting protein 4-like1.7e-3290.79Show/hide
Query:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQAKRAADYGKPQSKKWFCCIQSPPTQS
        MS KGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGK  QAK  AD GKPQ+KKWFCCIQSPPTQS
Subjt:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQAKRAADYGKPQSKKWFCCIQSPPTQS

A0A2I4F1A1 protein NOI41.8e-2984.42Show/hide
Query:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKV-SQAKRAADYGKPQSKKWFCCIQSPPTQS
        MS KGQPLPKFGEWDVN+PASAEGFTVIFNKARDEKKTGG PESPGKV SQ+K A D GKPQ+KKWFCC+Q PPT S
Subjt:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKV-SQAKRAADYGKPQSKKWFCCIQSPPTQS

A0A6J1CR09 RPM1-interacting protein 4-like isoform X13.6e-3088.16Show/hide
Query:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQAKRAADYGKPQSKKWFCCIQSPPTQS
        MS KGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQ ES  K +Q KR AD GKPQSKKWFCCIQSPPTQS
Subjt:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQAKRAADYGKPQSKKWFCCIQSPPTQS

A0A6P9E4Z8 protein NOI4-like8.8e-2981.58Show/hide
Query:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQAKRAADYGKPQSKKWFCCIQSPPTQS
        MS KGQPLPKFGEWDVN+PASAEGFTVIFNKARDEKKTGG+PESPG V   K   D GKPQ+KKWFCCIQ PPT S
Subjt:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQAKRAADYGKPQSKKWFCCIQSPPTQS

SwissProt top hitse value%identityAlignment
O22633 Protein NOI44.4e-2569.62Show/hide
Query:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQA---KRAADYGKPQSKKWFCCIQSPPTQS
        MS KG+PLPKFGEWDVN+PASAEGFTVIFNKARDEKKTGG+P SPGK S+        D  KPQ KKW CC+Q+P   S
Subjt:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQA---KRAADYGKPQSKKWFCCIQSPPTQS

Q8GYN5 RPM1-interacting protein 44.5e-0637.7Show/hide
Query:  LPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQAKRAADYGKPQSKKWFCC
        +PKFG+WD NNP+SA+G+T IFNK R+E+ +G       +    + + +   P +    CC
Subjt:  LPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQAKRAADYGKPQSKKWFCC

Arabidopsis top hitse value%identityAlignment
AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein2.5e-2064.38Show/hide
Query:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQA--KRAADYGKPQSKKWFCCIQS
        M+ KG+PLPKFGEWDVN+P+SAEGFTVIFNKAR+EKK GG+ +SPGK      K      KP +KKWFCCI++
Subjt:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQA--KRAADYGKPQSKKWFCCIQS

AT5G55850.1 RPM1-interacting protein 4 (RIN4) family protein4.3e-2071.64Show/hide
Query:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQA---KRAADYGKPQSKK
        MS KG+PLPKFGEWDVN+PASAEGFTVIFNKARDEKKTGG+P SPGK S+        D  KPQ  K
Subjt:  MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQA---KRAADYGKPQSKK

AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein3.7e-1971.88Show/hide
Query:  KGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQA---KRAADYGKPQSKK
        KG+PLPKFGEWDVN+PASAEGFTVIFNKARDEKKTGG+P SPGK S+        D  KPQ  K
Subjt:  KGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQA---KRAADYGKPQSKK

AT5G55850.3 RPM1-interacting protein 4 (RIN4) family protein2.6e-2569.74Show/hide
Query:  KGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQA---KRAADYGKPQSKKWFCCIQSPPTQS
        KG+PLPKFGEWDVN+PASAEGFTVIFNKARDEKKTGG+P SPGK S+        D  KPQ KKW CC+Q+P   S
Subjt:  KGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQA---KRAADYGKPQSKKWFCCIQSPPTQS

AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein7.9e-1456.76Show/hide
Query:  KGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKT----GGQPE---SPGKVSQAKRAADYG--KPQSK-KWFC
        KG+PLPKFGEWDVNNPASAEGFTVIF+KA DEKKT    G  P    SP +   + +  ++    P++K KWFC
Subjt:  KGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKT----GGQPE---SPGKVSQAKRAADYG--KPQSK-KWFC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGGGAAGGGTCAGCCACTACCGAAGTTTGGTGAATGGGATGTCAATAATCCTGCTTCAGCAGAGGGCTTCACTGTGATCTTTAATAAGGCAAGAGATGAGAAGAA
AACCGGTGGCCAACCTGAATCACCTGGAAAGGTGTCTCAAGCAAAACGTGCAGCAGATTATGGGAAACCTCAGTCTAAGAAATGGTTCTGCTGCATCCAGAGCCCACCTA
CGCAATCTTGA
mRNA sequenceShow/hide mRNA sequence
GTAATAAGCCTGATTTGGCCCAAACAAAACAAAATTCTTTCTTCTTCTTCTTCTTCTCTCTCGCTCGCTCGCTCTCCTGGTGTGGCCATCCTCTTTCTTCCATTCTTCGA
GTCTTCGTTTACTGGCAAGGAACCTTCTCCTTTTCTCCACTTTCTCGAATTCATGTCGGGGAAGGGTCAGCCACTACCGAAGTTTGGTGAATGGGATGTCAATAATCCTG
CTTCAGCAGAGGGCTTCACTGTGATCTTTAATAAGGCAAGAGATGAGAAGAAAACCGGTGGCCAACCTGAATCACCTGGAAAGGTGTCTCAAGCAAAACGTGCAGCAGAT
TATGGGAAACCTCAGTCTAAGAAATGGTTCTGCTGCATCCAGAGCCCACCTACGCAATCTTGATGGTATTACCTTTCTGTAGATAACCGTATTGCTCTGCAATCGTCTCA
CTGGTTTTCGATAGAAGATGAGATTTGTAAAGCTGTGATCAGCCTGCCATACTATTTGGCTTCATAGAGGAAAAAAGTCGAAGAATTTTATGAGCTGTATTTGTGGTGAA
TTGTTAGTAGAAGCTGAGCTATGCTGTCTCATTTGTTTCTGCTTCCTTTTTTGTCCCTTTTTTTGGTTGTTTTTTAAGAAGCAGTTTGCTCCTTATTATATCTGATATTG
AATTTCTATTATTGTATGTGAAATGGTTTCTTTTTCTCTTTTT
Protein sequenceShow/hide protein sequence
MSGKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKVSQAKRAADYGKPQSKKWFCCIQSPPTQS