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Tan0003450 (gene) of Snake gourd v1 genome

Gene IDTan0003450
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposable element Tf2
Genome locationLG07:59322762..59328608
RNA-Seq ExpressionTan0003450
SyntenyTan0003450
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026133.1 hypothetical protein E6C27_scaffold19G00840 [Cucumis melo var. makuwa]2.2e-2443.92Show/hide
Query:  GRPR---TPPSSINPNQ--RVPQQTASSPGTSSQREKRPIAQTSALTPMNADNY-VMDLEFETT-------LNKVLKIKWWEKFDVSHLTEERIRKFLKV
        GRPR    PP  + PNQ      Q ASS   +S ++KRPI+Q SALTPM A+NY  MDL  + +       L K+L ++WW+++D SHL EE+I K+ KV
Subjt:  GRPR---TPPSSINPNQ--RVPQQTASSPGTSSQREKRPIAQTSALTPMNADNY-VMDLEFETT-------LNKVLKIKWWEKFDVSHLTEERIRKFLKV

Query:  N---PRVEEEQLLLQRSSLISSLARVSITSELQTIIQGVSQNKNENPPIQEGIPENDDIISESFVNDIGFEYDPYLNFDILDPYYDSQP
        N    R EE+Q LL ++S+++++      ++LQ +++ V  N N +   Q+G PE+   +S S VNDI FE +PY NFDI DPY +SQP
Subjt:  N---PRVEEEQLLLQRSSLISSLARVSITSELQTIIQGVSQNKNENPPIQEGIPENDDIISESFVNDIGFEYDPYLNFDILDPYYDSQP

KAA0050195.1 polyprotein [Cucumis melo var. makuwa]4.5e-2247.1Show/hide
Query:  SSRPSVCTDTKTTTRGRLVARSKTMRTSVDFDQPIPDIQYEKSEGSISPTQTDMERKSGYIHNQINVFSTDEDEMTAEDEAIYDKMYNDYIDRYIHQKNW
        S R S+ ++ + TTR R + +S +MR  VDF+Q IPD QYEKSEGS+SPTQT MER+SG I+NQIN        +T E +A+YD+ Y  YID+YI+QKNW
Subjt:  SSRPSVCTDTKTTTRGRLVARSKTMRTSVDFDQPIPDIQYEKSEGSISPTQTDMERKSGYIHNQINVFSTDEDEMTAEDEAIYDKMYNDYIDRYIHQKNW

Query:  ANRSKFFMKDEFIALIKPK---YSQKKLGRP---RTPPSSINPNQRVPQQTASSP
         NR KF  K EFIA +  K    S + + +P   RT       ++  P++ AS P
Subjt:  ANRSKFFMKDEFIALIKPK---YSQKKLGRP---RTPPSSINPNQRVPQQTASSP

KAA0050626.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]4.1e-1543.7Show/hide
Query:  LNKVLKIKWWEKFDVSHLTEERIRKFLKVNPRV---EEEQLLLQRSSLISSLARVSITSELQTIIQGVSQNKNENPPIQEGIPENDDIISESFVNDIGFE
        L K+L++KWW+K+D S L EE I K+ K N R+   EE+Q LL ++S+++S+A     ++LQ +++ V  N +++   ++  PE+   IS+S VNDI F 
Subjt:  LNKVLKIKWWEKFDVSHLTEERIRKFLKVNPRV---EEEQLLLQRSSLISSLARVSITSELQTIIQGVSQNKNENPPIQEGIPENDDIISESFVNDIGFE

Query:  YDPYLNFDILDPYYDSQPG
         DPY NFDI D Y DSQ G
Subjt:  YDPYLNFDILDPYYDSQPG

KAA0050634.1 hypothetical protein E6C27_scaffold673G001010 [Cucumis melo var. makuwa]1.2e-2252.94Show/hide
Query:  SSRPSVCTDTKTTTRGRLVARSKTMRTSVDFDQPIPDIQYEKSEGSISPTQTDMERKSGYIHNQINVFSTDEDEMTAEDEAIYDKMYNDYIDRYIHQKNW
        S R SV ++ + TTR R +  S +MR +VDF+Q IPD+QYEKS+GS+SPTQTDMER+SG I+NQIN        +T ED+A+YD+ Y  Y+D+Y +QK+W
Subjt:  SSRPSVCTDTKTTTRGRLVARSKTMRTSVDFDQPIPDIQYEKSEGSISPTQTDMERKSGYIHNQINVFSTDEDEMTAEDEAIYDKMYNDYIDRYIHQKNW

Query:  ANRSKFFMKDEFIALIKPK
         N  KF  K EFIA +  K
Subjt:  ANRSKFFMKDEFIALIKPK

KAA0051819.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]9.1e-1543.59Show/hide
Query:  KVLKIKWWEKFDVSHLTEERIRKFLKVNPRV---EEEQLLLQRSSLISSLARVSITSELQTIIQGVSQNKNENPPIQEGIPENDDIISESFVNDIGFEYD
        K+L +KWW+K++ SHL E++I K+ K N R+   EE+Q LL ++S+++S+A     ++LQ I++ V  N  ++   +E  PE+  I S+S VN+I  + D
Subjt:  KVLKIKWWEKFDVSHLTEERIRKFLKVNPRV---EEEQLLLQRSSLISSLARVSITSELQTIIQGVSQNKNENPPIQEGIPENDDIISESFVNDIGFEYD

Query:  PYLNFDILDPYYDSQPG
         Y NFDI DPY DSQPG
Subjt:  PYLNFDILDPYYDSQPG

TrEMBL top hitse value%identityAlignment
A0A5A7U8X4 Retrotransposable element Tf22.0e-1543.7Show/hide
Query:  LNKVLKIKWWEKFDVSHLTEERIRKFLKVNPRV---EEEQLLLQRSSLISSLARVSITSELQTIIQGVSQNKNENPPIQEGIPENDDIISESFVNDIGFE
        L K+L++KWW+K+D S L EE I K+ K N R+   EE+Q LL ++S+++S+A     ++LQ +++ V  N +++   ++  PE+   IS+S VNDI F 
Subjt:  LNKVLKIKWWEKFDVSHLTEERIRKFLKVNPRV---EEEQLLLQRSSLISSLARVSITSELQTIIQGVSQNKNENPPIQEGIPENDDIISESFVNDIGFE

Query:  YDPYLNFDILDPYYDSQPG
         DPY NFDI D Y DSQ G
Subjt:  YDPYLNFDILDPYYDSQPG

A0A5A7U9B4 Polyprotein2.2e-2247.1Show/hide
Query:  SSRPSVCTDTKTTTRGRLVARSKTMRTSVDFDQPIPDIQYEKSEGSISPTQTDMERKSGYIHNQINVFSTDEDEMTAEDEAIYDKMYNDYIDRYIHQKNW
        S R S+ ++ + TTR R + +S +MR  VDF+Q IPD QYEKSEGS+SPTQT MER+SG I+NQIN        +T E +A+YD+ Y  YID+YI+QKNW
Subjt:  SSRPSVCTDTKTTTRGRLVARSKTMRTSVDFDQPIPDIQYEKSEGSISPTQTDMERKSGYIHNQINVFSTDEDEMTAEDEAIYDKMYNDYIDRYIHQKNW

Query:  ANRSKFFMKDEFIALIKPK---YSQKKLGRP---RTPPSSINPNQRVPQQTASSP
         NR KF  K EFIA +  K    S + + +P   RT       ++  P++ AS P
Subjt:  ANRSKFFMKDEFIALIKPK---YSQKKLGRP---RTPPSSINPNQRVPQQTASSP

A0A5A7UEA0 Retrotransposable element Tf24.4e-1543.59Show/hide
Query:  KVLKIKWWEKFDVSHLTEERIRKFLKVNPRV---EEEQLLLQRSSLISSLARVSITSELQTIIQGVSQNKNENPPIQEGIPENDDIISESFVNDIGFEYD
        K+L +KWW+K++ SHL E++I K+ K N R+   EE+Q LL ++S+++S+A     ++LQ I++ V  N  ++   +E  PE+  I S+S VN+I  + D
Subjt:  KVLKIKWWEKFDVSHLTEERIRKFLKVNPRV---EEEQLLLQRSSLISSLARVSITSELQTIIQGVSQNKNENPPIQEGIPENDDIISESFVNDIGFEYD

Query:  PYLNFDILDPYYDSQPG
         Y NFDI DPY DSQPG
Subjt:  PYLNFDILDPYYDSQPG

A0A5D3CBV5 Uncharacterized protein5.7e-2352.94Show/hide
Query:  SSRPSVCTDTKTTTRGRLVARSKTMRTSVDFDQPIPDIQYEKSEGSISPTQTDMERKSGYIHNQINVFSTDEDEMTAEDEAIYDKMYNDYIDRYIHQKNW
        S R SV ++ + TTR R +  S +MR +VDF+Q IPD+QYEKS+GS+SPTQTDMER+SG I+NQIN        +T ED+A+YD+ Y  Y+D+Y +QK+W
Subjt:  SSRPSVCTDTKTTTRGRLVARSKTMRTSVDFDQPIPDIQYEKSEGSISPTQTDMERKSGYIHNQINVFSTDEDEMTAEDEAIYDKMYNDYIDRYIHQKNW

Query:  ANRSKFFMKDEFIALIKPK
         N  KF  K EFIA +  K
Subjt:  ANRSKFFMKDEFIALIKPK

A0A5D3CI63 Uncharacterized protein1.0e-2443.92Show/hide
Query:  GRPR---TPPSSINPNQ--RVPQQTASSPGTSSQREKRPIAQTSALTPMNADNY-VMDLEFETT-------LNKVLKIKWWEKFDVSHLTEERIRKFLKV
        GRPR    PP  + PNQ      Q ASS   +S ++KRPI+Q SALTPM A+NY  MDL  + +       L K+L ++WW+++D SHL EE+I K+ KV
Subjt:  GRPR---TPPSSINPNQ--RVPQQTASSPGTSSQREKRPIAQTSALTPMNADNY-VMDLEFETT-------LNKVLKIKWWEKFDVSHLTEERIRKFLKV

Query:  N---PRVEEEQLLLQRSSLISSLARVSITSELQTIIQGVSQNKNENPPIQEGIPENDDIISESFVNDIGFEYDPYLNFDILDPYYDSQP
        N    R EE+Q LL ++S+++++      ++LQ +++ V  N N +   Q+G PE+   +S S VNDI FE +PY NFDI DPY +SQP
Subjt:  N---PRVEEEQLLLQRSSLISSLARVSITSELQTIIQGVSQNKNENPPIQEGIPENDDIISESFVNDIGFEYDPYLNFDILDPYYDSQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGCCGTCCTAGCGTGTGTACAGACACCAAGACAACTACTAGAGGAAGACTAGTCGCTAGGTCTAAAACCATGCGAACGTCTGTAGACTTTGATCAACCAATCCC
AGACATTCAATATGAAAAATCCGAAGGATCCATTTCTCCGACTCAAACTGATATGGAGCGAAAATCTGGATATATACACAACCAGATCAATGTTTTCTCTACAGATGAAG
ATGAAATGACTGCAGAAGATGAAGCGATATACGATAAGATGTATAATGATTATATCGATCGTTATATTCATCAAAAGAATTGGGCCAACCGATCTAAGTTCTTTATGAAG
GATGAATTCATAGCTTTAATAAAGCCAAAATATTCTCAAAAGAAACTGGGACGGCCACGTACGCCTCCTTCCTCAATCAACCCTAATCAAAGGGTTCCTCAACAAACAGC
TAGTTCTCCTGGAACTAGTTCTCAAAGGGAAAAACGCCCCATTGCTCAAACATCTGCACTCACTCCTATGAATGCAGACAATTACGTGATGGACCTTGAATTTGAAACAA
CTCTTAACAAAGTTTTAAAAATTAAATGGTGGGAAAAATTCGATGTATCCCATCTCACTGAAGAAAGGATTAGAAAATTCCTAAAAGTTAATCCTCGAGTAGAAGAAGAA
CAACTTCTTCTTCAGAGAAGTTCACTCATATCTTCTCTAGCCAGAGTATCCATAACCTCCGAGCTACAGACAATCATTCAGGGAGTTTCTCAAAACAAAAATGAGAATCC
ACCTATTCAAGAAGGAATACCCGAAAATGATGATATCATTTCAGAGTCTTTTGTCAATGATATCGGCTTTGAATATGACCCATATTTAAATTTCGATATTCTCGATCCAT
ACTATGATTCCCAACCAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTAGCCGTCCTAGCGTGTGTACAGACACCAAGACAACTACTAGAGGAAGACTAGTCGCTAGGTCTAAAACCATGCGAACGTCTGTAGACTTTGATCAACCAATCCC
AGACATTCAATATGAAAAATCCGAAGGATCCATTTCTCCGACTCAAACTGATATGGAGCGAAAATCTGGATATATACACAACCAGATCAATGTTTTCTCTACAGATGAAG
ATGAAATGACTGCAGAAGATGAAGCGATATACGATAAGATGTATAATGATTATATCGATCGTTATATTCATCAAAAGAATTGGGCCAACCGATCTAAGTTCTTTATGAAG
GATGAATTCATAGCTTTAATAAAGCCAAAATATTCTCAAAAGAAACTGGGACGGCCACGTACGCCTCCTTCCTCAATCAACCCTAATCAAAGGGTTCCTCAACAAACAGC
TAGTTCTCCTGGAACTAGTTCTCAAAGGGAAAAACGCCCCATTGCTCAAACATCTGCACTCACTCCTATGAATGCAGACAATTACGTGATGGACCTTGAATTTGAAACAA
CTCTTAACAAAGTTTTAAAAATTAAATGGTGGGAAAAATTCGATGTATCCCATCTCACTGAAGAAAGGATTAGAAAATTCCTAAAAGTTAATCCTCGAGTAGAAGAAGAA
CAACTTCTTCTTCAGAGAAGTTCACTCATATCTTCTCTAGCCAGAGTATCCATAACCTCCGAGCTACAGACAATCATTCAGGGAGTTTCTCAAAACAAAAATGAGAATCC
ACCTATTCAAGAAGGAATACCCGAAAATGATGATATCATTTCAGAGTCTTTTGTCAATGATATCGGCTTTGAATATGACCCATATTTAAATTTCGATATTCTCGATCCAT
ACTATGATTCCCAACCAGGATGA
Protein sequenceShow/hide protein sequence
MSSRPSVCTDTKTTTRGRLVARSKTMRTSVDFDQPIPDIQYEKSEGSISPTQTDMERKSGYIHNQINVFSTDEDEMTAEDEAIYDKMYNDYIDRYIHQKNWANRSKFFMK
DEFIALIKPKYSQKKLGRPRTPPSSINPNQRVPQQTASSPGTSSQREKRPIAQTSALTPMNADNYVMDLEFETTLNKVLKIKWWEKFDVSHLTEERIRKFLKVNPRVEEE
QLLLQRSSLISSLARVSITSELQTIIQGVSQNKNENPPIQEGIPENDDIISESFVNDIGFEYDPYLNFDILDPYYDSQPG