CuGenDBv2

Gene ID	Tan0003477
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Beta-galactosidase
Genome location	LG06:73793170..73797452
RNA-Seq Expression	Tan0003477
Synteny	Tan0003477
Gene Ontology terms	GO:0005990 - lactose catabolic process (biological process) GO:0009341 - beta-galactosidase complex (cellular component) GO:0004565 - beta-galactosidase activity (molecular function) GO:0030246 - carbohydrate binding (molecular function)
InterPro domains	IPR006104 - Glycosyl hydrolases family 2, sugar binding domain IPR008979 - Galactose-binding-like domain superfamily IPR023933 - Glycoside hydrolase, family 2, beta-galactosidase

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6601128.1 hypothetical protein SDJN03_06361, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-23

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Query:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ
        +G+  +    +EFEI EYCHPCGSKSKNVLAVQVL+WSDGSYLEDQDQWWLSGIHRDVLL+SKPQ
Subjt:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ

XP_022988887.1 uncharacterized protein LOC111486104 [Cucurbita maxima]

1.3e-23

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Query:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ
        +G+  +    +EFEI EYCHPCGSKSKNVLAVQVL+WSDGSYLEDQDQWWLSGIHRDVLL+SKPQ
Subjt:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ

XP_023526876.1 uncharacterized protein LOC111790243 [Cucurbita pepo subsp. pepo]

1.3e-23

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Query:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ
        +G+  +    +EFEI EYCHPCGSKSKNVLAVQVL+WSDGSYLEDQDQWWLSGIHRDVLL+SKPQ
Subjt:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ

XP_038891496.1 beta-galactosidase isoform X1 [Benincasa hispida]

2.2e-23

78.46

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Query:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ
        +G+  +    +EFE+ EYCHPCGS+SKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLL+SKPQ
Subjt:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ

XP_038891497.1 beta-galactosidase isoform X2 [Benincasa hispida]

2.2e-23

78.46

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Query:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ
        +G+  +    +EFE+ EYCHPCGS+SKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLL+SKPQ
Subjt:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KTQ9 Lactase

1.4e-23

78.46

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Query:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ
        +G+  +    +EFEI EYCHPCGS+SKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDV+L+SKPQ
Subjt:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ

A0A1S3BGB3 Lactase

1.4e-23

78.46

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Query:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ
        +G+  +    +EFEI EYCHPCGS+SKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDV+L+SKPQ
Subjt:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ

A0A5D3CBT7 Lactase

1.4e-23

78.46

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Query:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ
        +G+  +    +EFEI EYCHPCGS+SKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDV+L+SKPQ
Subjt:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ

A0A6J1GXK4 Lactase

1.8e-23

78.46

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Query:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ
        +G+  +    +EFEI +YCHPCGSKSKNVLAVQVL+WSDGSYLEDQDQWWLSGIHRDVLL+SKPQ
Subjt:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ

A0A6J1JEA6 Lactase

6.2e-24

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Query:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ
        +G+  +    +EFEI EYCHPCGSKSKNVLAVQVL+WSDGSYLEDQDQWWLSGIHRDVLL+SKPQ
Subjt:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ

SwissProt top hits

e value

%identity

Alignment

A5F5U6 Beta-galactosidase

9.0e-12

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Query:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKP
        +G+  +    +EFE+  Y      + +N+L   VL+WSDGSYLEDQD WWLSGI RDV L  KP
Subjt:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKP

Q56307 Beta-galactosidase

1.8e-12

48.48

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Query:  EIGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ
        +IG   +  T +EF + +   P     KN++ V+VLKWSDGSYLEDQD WW +GI+RDV L + P+
Subjt:  EIGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ

Q6LL68 Beta-galactosidase

2.8e-13

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Query:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQE
        +G+  +    +EF++ +Y     +  +N LAV V++WSDGSYLEDQD WWLSGI RDV L+SKP++
Subjt:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQE

Q7MG04 Beta-galactosidase

6.9e-12

49.23

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Query:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ
        +G+  +    +EF++  +        +N LAV V++W DGSYLEDQD WWLSGI RDV L+SKPQ
Subjt:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ

Q8D4H3 Beta-galactosidase

6.9e-12

49.23

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Query:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ
        +G+  +    +EF++  +        +N LAV V++W DGSYLEDQD WWLSGI RDV L+SKPQ
Subjt:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G22890.1 ATP sulfurylase 1

2.8e-08

84.85

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Query:  MRESEFLQTLHFNSLRLPDGSVANMSVPKSLEI
        MRESEFLQTLHFNSLRL DGSV NMSVP  L I
Subjt:  MRESEFLQTLHFNSLRLPDGSVANMSVPKSLEI

AT3G54440.1 glycoside hydrolase family 2 protein

8.3e-21

63.08

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Query:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ
        +G+  +    +EFEI +YC+P  S  +NVLAVQV +WSDGSYLEDQD WWLSGIHRDVLL++KP+
Subjt:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ

AT3G54440.2 glycoside hydrolase family 2 protein

8.3e-21

63.08

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Query:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ
        +G+  +    +EFEI +YC+P  S  +NVLAVQV +WSDGSYLEDQD WWLSGIHRDVLL++KP+
Subjt:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ

AT3G54440.3 glycoside hydrolase family 2 protein

8.3e-21

63.08

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Query:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ
        +G+  +    +EFEI +YC+P  S  +NVLAVQV +WSDGSYLEDQD WWLSGIHRDVLL++KP+
Subjt:  IGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQ

AT4G14680.1 Pseudouridine synthase/archaeosine transglycosylase-like family protein

1.8e-07

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Query:  MRESEFLQTLHFNSLRLPDGSVANMSVPKSLEIGHQ
        MRESEFLQTLHFN L L DGSV NMSVP  L I  Q
Subjt:  MRESEFLQTLHFNSLRLPDGSVANMSVPKSLEIGHQ

Sequences

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CDS sequence

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ATGAGAGAATCCGAGTTCCTCCAAACGCTTCATTTCAATTCGCTCAGGCTTCCAGATGGGTCTGTGGCGAACATGTCAGTGCCCAAATCTCTTGAAATTGGTCACCAGAC
AAACGAGATCACTACCAGTGAGTTTGAAATAATAGAATATTGCCATCCATGTGGCTCAAAGTCCAAGAATGTTCTTGCTGTTCAAGTGTTAAAATGGAGTGATGGTTCTT
ACCTCGAGGATCAAGACCAGTGGTGGCTCTCAGGGATTCATCGTGATGTCCTTCTCATATCCAAGCCTCAGGAAGGCGAAAAGACCCAAACAAGTAAGGTCAATGAATTG
GAATCAGTAATACAGGTTGTGCACAGGAGCCCGAGTCGAGGCTAG

mRNA sequence

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Protein sequence

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MRESEFLQTLHFNSLRLPDGSVANMSVPKSLEIGHQTNEITTSEFEIIEYCHPCGSKSKNVLAVQVLKWSDGSYLEDQDQWWLSGIHRDVLLISKPQEGEKTQTSKVNEL
ESVIQVVHRSPSRG

Tan0003477 (gene) of Snake gourd v1 genome