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Tan0003488 (gene) of Snake gourd v1 genome

Gene IDTan0003488
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTNFR/CD27/30/40/95 cysteine-rich region
Genome locationLG05:65893279..65893578
RNA-Seq ExpressionTan0003488
SyntenyTan0003488
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573550.1 hypothetical protein SDJN03_27437, partial [Cucurbita argyrosperma subsp. sororia]9.6e-3069.31Show/hide
Query:  MGRSLHSHSVITAAVILMTAVWMTT---ADGEVCSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCGGAWPRLSTCRRCMSSCKCSCTPSS
        M  SL  +S ITAAVILMTA+ +T+   AD ++C DCIR RM + CPACAPPLRCMAQCLWGGGSRS CVK+C  GGAW RL +C+RCM SCKCSCT SS
Subjt:  MGRSLHSHSVITAAVILMTAVWMTT---ADGEVCSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCGGAWPRLSTCRRCMSSCKCSCTPSS

Query:  S
        S
Subjt:  S

KAG6573554.1 hypothetical protein SDJN03_27441, partial [Cucurbita argyrosperma subsp. sororia]2.8e-2968.32Show/hide
Query:  MGRSLHSHSVITAAVILMTAVWMTT---ADGEVCSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCGGAWPRLSTCRRCMSSCKCSCTPSS
        M  SL  HS ITA VILMT + +T+   AD ++C DCIR RM + CPACAPPLRCMAQCLWGGGSRS CVK+C  GGAW RL +C+RCM SCKCSCT SS
Subjt:  MGRSLHSHSVITAAVILMTAVWMTT---ADGEVCSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCGGAWPRLSTCRRCMSSCKCSCTPSS

Query:  S
        S
Subjt:  S

KAG7012656.1 hypothetical protein SDJN02_25409, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-2769.89Show/hide
Query:  SVITAAVILMTAVWMTT---ADGEVCSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCGGAWPRLSTCRRCMSSCKCSCTPSSS
        + ITAAVILMTA+ +T+    D ++C DCIR RM + CPACAPPLRCMAQCLWGGGSRS CVK+C  GGAW RL +C+RCM SCKCSCT SSS
Subjt:  SVITAAVILMTAVWMTT---ADGEVCSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCGGAWPRLSTCRRCMSSCKCSCTPSSS

XP_010646205.1 PREDICTED: uncharacterized protein LOC104878123 [Vitis vinifera]5.0e-1852.17Show/hide
Query:  SVITAAVILMTAVWM-------TTADGEVCSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCGGAWPRLSTCRRCMSSCKCSC
        S + A ++L+   W+         +DG  C DCI  +M   CP+CAP LRCMA+CLWGG S+S CVKRC C G  PRLS C++CMS CKCSC
Subjt:  SVITAAVILMTAVWM-------TTADGEVCSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCGGAWPRLSTCRRCMSSCKCSC

XP_019265114.1 PREDICTED: uncharacterized protein LOC109242719 [Nicotiana attenuata]5.0e-1847.47Show/hide
Query:  GRSLHSHSVITAAVILMTAVWMTT------ADGEVCSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCGGAWPRLSTCRRCMSSCKCSCT
        G+ L S ++    ++LM    MT+       DG+ C +CI   M++DCP CAP +RCMA+CLWGG SR+ C K+C C G +PRLS C+ C+S CKCSC+
Subjt:  GRSLHSHSVITAAVILMTAVWMTT------ADGEVCSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCGGAWPRLSTCRRCMSSCKCSCT

TrEMBL top hitse value%identityAlignment
A0A0A0LW71 Uncharacterized protein1.7e-2767.78Show/hide
Query:  ITAAVILMTAVWMTT---ADGEVCSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCGGAWPRLSTCRRCMSSCKCSCTPSS
        IT  VILMTAVW+T    A+G+VC+DCIR RME DCPACAPPLRCMAQCLWGG SRS CV RC  GGAW  L++C++C++ CKC C+ SS
Subjt:  ITAAVILMTAVWMTT---ADGEVCSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCGGAWPRLSTCRRCMSSCKCSCTPSS

A0A438FE46 Uncharacterized protein2.4e-1852.17Show/hide
Query:  SVITAAVILMTAVWM-------TTADGEVCSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCGGAWPRLSTCRRCMSSCKCSC
        S + A ++L+   W+         +DG  C DCI  +M   CP+CAP LRCMA+CLWGG S+S CVKRC C G  PRLS C++CMS CKCSC
Subjt:  SVITAAVILMTAVWM-------TTADGEVCSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCGGAWPRLSTCRRCMSSCKCSC

A0A438JGC2 Uncharacterized protein4.1e-1852.17Show/hide
Query:  SVITAAVILMTAVWMT-------TADGEVCSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCGGAWPRLSTCRRCMSSCKCSC
        S + A ++L    W+T        +DG  C DCI  +M   CP+CAP L CMA+CLWGG S+S CVKRC C G  PRLS C++CMS CKCSC
Subjt:  SVITAAVILMTAVWMT-------TADGEVCSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCGGAWPRLSTCRRCMSSCKCSC

A0A6A4P6C6 Uncharacterized protein9.1e-1855.7Show/hide
Query:  VILMTAVWMTTADGEVCSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCGGAWPRLSTCRRCMSSCKCSC
        VI    +    ADG  C DCI  +M+ DCP+C P L CMA+CLWGG SRS C+  C+C  A+P LS C+RCMS CKCSC
Subjt:  VILMTAVWMTTADGEVCSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCGGAWPRLSTCRRCMSSCKCSC

A0A6P3ZGK3 uncharacterized protein LOC1074149527.0e-1861.76Show/hide
Query:  ADGEVCSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCGGAWPRLSTCRRCMSSCKCSC
        +DG  C  CI  +M+  CPACAP LRCMA+CLW G SR  C+KRC CGG  P+LS C++CMS CKCSC
Subjt:  ADGEVCSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCGGAWPRLSTCRRCMSSCKCSC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G12064.1 unknown protein3.5e-1451.56Show/hide
Query:  CSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCG-GAWPRLSTCRRCMSSCKCSC
        C  C+  +M+ DCP C P LRCMA+CLWGG ++  C   C C   A P L  C+RC+S CKCSC
Subjt:  CSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCG-GAWPRLSTCRRCMSSCKCSC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCGATCATTACACTCTCACTCAGTAATCACGGCGGCGGTGATCCTAATGACCGCCGTCTGGATGACGACAGCGGACGGCGAGGTATGCAGCGACTGCATCAGGGT
CAGGATGGAGATGGACTGCCCGGCCTGCGCACCGCCTCTTCGCTGCATGGCGCAGTGCCTGTGGGGCGGCGGTTCAAGGTCGACGTGCGTTAAGCGCTGCCATTGCGGCG
GCGCGTGGCCGAGGCTTTCAACTTGCAGGCGTTGCATGTCGAGTTGCAAGTGCAGTTGTACCCCATCTTCCAGCGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGCGATCATTACACTCTCACTCAGTAATCACGGCGGCGGTGATCCTAATGACCGCCGTCTGGATGACGACAGCGGACGGCGAGGTATGCAGCGACTGCATCAGGGT
CAGGATGGAGATGGACTGCCCGGCCTGCGCACCGCCTCTTCGCTGCATGGCGCAGTGCCTGTGGGGCGGCGGTTCAAGGTCGACGTGCGTTAAGCGCTGCCATTGCGGCG
GCGCGTGGCCGAGGCTTTCAACTTGCAGGCGTTGCATGTCGAGTTGCAAGTGCAGTTGTACCCCATCTTCCAGCGTATAA
Protein sequenceShow/hide protein sequence
MGRSLHSHSVITAAVILMTAVWMTTADGEVCSDCIRVRMEMDCPACAPPLRCMAQCLWGGGSRSTCVKRCHCGGAWPRLSTCRRCMSSCKCSCTPSSSV