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Tan0003489 (gene) of Snake gourd v1 genome

Gene IDTan0003489
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG01:116078550..116079438
RNA-Seq ExpressionTan0003489
SyntenyTan0003489
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_017250619.1 PREDICTED: uncharacterized protein LOC108221234 [Daucus carota subsp. sativus]4.0e-1025Show/hide
Query:  CPRAQKLWNILISGIVDGLDRSWSIQDIWIYLFRNYNTKSFELLSVGAWGIWNDRNNWCFNQQLTLISARSKWVLQYLQEVQSTKSSSMPKSKSG----I
        CP AQ++W ++    + G     S +D+ +Y+         +++ +  WGIW +RN     Q+    S    W+  Y +E+++   S       G     
Subjt:  CPRAQKLWNILISGIVDGLDRSWSIQDIWIYLFRNYNTKSFELLSVGAWGIWNDRNNWCFNQQLTLISARSKWVLQYLQEVQSTKSSSMPKSKSG----I

Query:  TRPSSAPSCINIFVDAACSEQEGRNGVGVAFRANVGRCLVAMATKHDGYLNSTCSEAVALYDGLKLASSLEFSQVHFFSDSLSLVAMVNGFQEPTSDIKN
         +         +FVDAA S+   R G+G A  A+  +    ++   +G L+   +EA+AL  GL+ A +  ++     +DS SLV  +N   E  +++  
Subjt:  TRPSSAPSCINIFVDAACSEQEGRNGVGVAFRANVGRCLVAMATKHDGYLNSTCSEAVALYDGLKLASSLEFSQVHFFSDSLSLVAMVNGFQEPTSDIKN

Query:  YIED
         I D
Subjt:  YIED

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]1.4e-1533.72Show/hide
Query:  KCPRAQKLWNILISGIVDGLDRSWSIQDIWIYLFRNYNTKSFELLSVGAWGIWNDRNNWCFNQQLTLISARSKWVLQYLQEVQ------------STKSS
        KC RA+++WNIL+       D + S+QD  +YL  + +T  F+L+ VG W IWNDRN     +Q+     RS W+L Y+++ Q               +S
Subjt:  KCPRAQKLWNILISGIVDGLDRSWSIQDIWIYLFRNYNTKSFELLSVGAWGIWNDRNNWCFNQQLTLISARSKWVLQYLQEVQ------------STKSS

Query:  SMPKSKSGITRPSSAPSCINIFVDAACSEQEGRNGVGVAFRANVGRCLVAMATKHDGYLNSTCSEAVALYDG
        S  ++      P  A   I I VDAAC + + R G+G+  R   G+ L   A  HD  +    +E++AL+DG
Subjt:  SMPKSKSGITRPSSAPSCINIFVDAACSEQEGRNGVGVAFRANVGRCLVAMATKHDGYLNSTCSEAVALYDG

XP_024161927.1 uncharacterized protein LOC112169171 [Rosa chinensis]1.7e-0827Show/hide
Query:  VNLPTKCPRAQKLWNILISGIVDGLDRSWSIQDIWIYLFRNYNTKSFELLSVGAWGIWNDRNNWCFNQQLTLISARSKWVLQYLQEVQSTKSSSMPKSKS
        ++L   CP A+++WN   +GI      S +IQ+ +  +   +  +    + +  WGIW  RN+  + QQ    S      L + +E +   +SS+ +   
Subjt:  VNLPTKCPRAQKLWNILISGIVDGLDRSWSIQDIWIYLFRNYNTKSFELLSVGAWGIWNDRNNWCFNQQLTLISARSKWVLQYLQEVQSTKSSSMPKSKS

Query:  GITRPSSAPSCINIFVDAACSEQEGRNGVGVAFRANVGRCLVAMATKHDGYLNSTCSEAVALYDGLKLASSLEFSQVHFFSDSLSLVAMVNGFQEPTSDI
         I   +  P  + I VD A      R GVG   RA+ G  +   A  +    +   +E +AL DGL LA +L+ ++V F    +    +V   Q PT D+
Subjt:  GITRPSSAPSCINIFVDAACSEQEGRNGVGVAFRANVGRCLVAMATKHDGYLNSTCSEAVALYDGLKLASSLEFSQVHFFSDSLSLVAMVNGFQEPTSDI

XP_030497600.1 uncharacterized protein LOC115713257 [Cannabis sativa]1.1e-1025.45Show/hide
Query:  SSLAEGDRKWWKGLWGVNLPTK------------CPRAQKLWN--ILISGIVDGLDRSWS-----------IQDIW---------------------IYL
        SS +     WW+  WG+NLP+K             P AQ L++  ++ S       R+W             + +W                     ++L
Subjt:  SSLAEGDRKWWKGLWGVNLPTK------------CPRAQKLWN--ILISGIVDGLDRSWS-----------IQDIW---------------------IYL

Query:  FRNYNTKSFELLSVGAWGIWNDRNNWCFNQQLTLISARSKWVLQYLQEVQSTKSSSMP------KSKSGITRPSSAPSCINIFVDAACSEQEGRNGVGVA
                 E L    W IW+DRNN+   +QL    A S     YL    S KS++ P           +       S + + VDAA      + G+GV 
Subjt:  FRNYNTKSFELLSVGAWGIWNDRNNWCFNQQLTLISARSKWVLQYLQEVQSTKSSSMP------KSKSGITRPSSAPSCINIFVDAACSEQEGRNGVGVA

Query:  FRANVGRCLVAMATKHDGYLNSTCSEAVALYDGLKLASSLEFSQVHFFSDSLSLVAMVNGFQEPTSDIKNYIEDI
         R + GR + AM+    G   S   EA A++ GL+ A  L+       +D L LV  + G Q   S   + +EDI
Subjt:  FRANVGRCLVAMATKHDGYLNSTCSEAVALYDGLKLASSLEFSQVHFFSDSLSLVAMVNGFQEPTSDIKNYIEDI

XP_030504997.1 uncharacterized protein LOC115719966 [Cannabis sativa]2.0e-0926.76Show/hide
Query:  CPRAQKLW-NILISGIVDGLDRSWSIQDIWIYLFRNYNTKSFELLSVGAWGIWNDRNNWCFNQQLTLISARSKWVLQYLQEVQS-----------TKSSS
        C RA+ +W +           RS  I+D  I    N + + F +     W IWN RN+  FN+   + +   + V+ YLQ+  +           ++++ 
Subjt:  CPRAQKLW-NILISGIVDGLDRSWSIQDIWIYLFRNYNTKSFELLSVGAWGIWNDRNNWCFNQQLTLISARSKWVLQYLQEVQS-----------TKSSS

Query:  MPKSKSGITRPSSAPSCINIFVDAACSEQEGRNGVGVAFRANVGRCLVAMATKHDGYLNSTCSEAVALYDGLKLASSLEFSQVHFFSDSLSLVAMVNGFQ
         P +      PS +P   ++FVDAA  +Q G  G G  F+      L +   +  G ++   +E  AL   LK     +FS    FSD L+LV+ VNG  
Subjt:  MPKSKSGITRPSSAPSCINIFVDAACSEQEGRNGVGVAFRANVGRCLVAMATKHDGYLNSTCSEAVALYDGLKLASSLEFSQVHFFSDSLSLVAMVNGFQ

Query:  EPTSDIKNYIEDI
        +  S +   +  I
Subjt:  EPTSDIKNYIEDI

TrEMBL top hitse value%identityAlignment
A0A2H9ZTD9 Ribonuclease H protein4.1e-0827.16Show/hide
Query:  ELLSVGAWGIWNDRNNWCFNQQLTLISARSKWVLQYLQEVQSTKSSSMPKSK--SGITRPSSAPSCINIFVDAACSEQEGRNGVGVAFRANVGRCLVAMA
        EL ++  W IWN+RNN     +       S +   YL E+++T+ S+   +     +  P   P+ I + VD A  ++ GR GVGV  R + G  +  ++
Subjt:  ELLSVGAWGIWNDRNNWCFNQQLTLISARSKWVLQYLQEVQSTKSSSMPKSK--SGITRPSSAPSCINIFVDAACSEQEGRNGVGVAFRANVGRCLVAMA

Query:  TKHDGYLNSTCSEAVALYDGLKLASSLEFSQVHFFSDSLSLVAMVNGFQEPTSDIKNYIEDI
        +   G L  T +E +A+     LA  ++ S +    DSL  + ++    E  S I+ +++ I
Subjt:  TKHDGYLNSTCSEAVALYDGLKLASSLEFSQVHFFSDSLSLVAMVNGFQEPTSDIKNYIEDI

A0A6J1CTE3 uncharacterized protein LOC1110145786.9e-1633.72Show/hide
Query:  KCPRAQKLWNILISGIVDGLDRSWSIQDIWIYLFRNYNTKSFELLSVGAWGIWNDRNNWCFNQQLTLISARSKWVLQYLQEVQ------------STKSS
        KC RA+++WNIL+       D + S+QD  +YL  + +T  F+L+ VG W IWNDRN     +Q+     RS W+L Y+++ Q               +S
Subjt:  KCPRAQKLWNILISGIVDGLDRSWSIQDIWIYLFRNYNTKSFELLSVGAWGIWNDRNNWCFNQQLTLISARSKWVLQYLQEVQ------------STKSS

Query:  SMPKSKSGITRPSSAPSCINIFVDAACSEQEGRNGVGVAFRANVGRCLVAMATKHDGYLNSTCSEAVALYDG
        S  ++      P  A   I I VDAAC + + R G+G+  R   G+ L   A  HD  +    +E++AL+DG
Subjt:  SMPKSKSGITRPSSAPSCINIFVDAACSEQEGRNGVGVAFRANVGRCLVAMATKHDGYLNSTCSEAVALYDG

A0A7J6ERF4 RNase H domain-containing protein4.1e-0825.53Show/hide
Query:  IQDIWIYLFRNYNTKSFELLSVGAWGIWNDRNNWCFNQQLTLISARSKWVLQYLQEV-----------QSTKSSSMPKSKSGITRPSSAPSCINIFVDAA
        ++D  I    N + + F +     W IWN RN+  FN+     +   ++V+ YLQ+            + ++++ +P++      PS +P   ++FVDAA
Subjt:  IQDIWIYLFRNYNTKSFELLSVGAWGIWNDRNNWCFNQQLTLISARSKWVLQYLQEV-----------QSTKSSSMPKSKSGITRPSSAPSCINIFVDAA

Query:  CSEQEGRNGVGVAFRANVGRCLVAMATKHDGYLNSTCSEAVALYDGLKLASSLEFSQVHFFSDSLSLVAMVNGFQEPTSDIKNYIEDI
         ++Q G  G G  F       L +   +  G ++   +E  A    LK     +FS    FSD L+LV+ VN   +  S +   +  I
Subjt:  CSEQEGRNGVGVAFRANVGRCLVAMATKHDGYLNSTCSEAVALYDGLKLASSLEFSQVHFFSDSLSLVAMVNGFQEPTSDIKNYIEDI

A0A803NGI9 Uncharacterized protein2.8e-0929.13Show/hide
Query:  CPRAQKLWNILISGIVDGLDRSWSIQDIWIYLFRNYNTKSFELLSVGAWGIWNDRNNWCFNQQ-LTLISARSKWVLQYLQ-EVQSTKSSSMPKSKSGITR
        C  A+K+W +    +   L    S  D  + L    +T   E L    W +WNDRNN+   +  L+     +K V  +   + QST S S+  S     +
Subjt:  CPRAQKLWNILISGIVDGLDRSWSIQDIWIYLFRNYNTKSFELLSVGAWGIWNDRNNWCFNQQ-LTLISARSKWVLQYLQ-EVQSTKSSSMPKSKSGITR

Query:  P---SSAPSCINIFVDAACSEQEGRNGVGVAFRANVGRCLVAMATKHDGYLNSTCSEAVALYDGLKLASSLEFSQVHFFSDSLSLVAMVNGFQEPTSDIK
        P   S     + + VDAAC     + GVG+  R + G+ + A +    G L     EA AL  G+  A+    S   F SDSL LV  +N      S   
Subjt:  P---SSAPSCINIFVDAACSEQEGRNGVGVAFRANVGRCLVAMATKHDGYLNSTCSEAVALYDGLKLASSLEFSQVHFFSDSLSLVAMVNGFQEPTSDIK

Query:  NYIEDI
        + + DI
Subjt:  NYIEDI

A0A803PZ74 Uncharacterized protein1.1e-0827.13Show/hide
Query:  IQDIWIYLFRNYNTKSFELLSVGAWGIWNDRNNWCFNQQLTLISARSKWVLQYLQEVQS-----------TKSSSMPKSKSGITRPSSAPSCINIFVDAA
        I+D  I    N + + F +     W IWN RN+  FN+   + +   + V+ YLQ+  +           ++++  P +      PS +P   ++FVDAA
Subjt:  IQDIWIYLFRNYNTKSFELLSVGAWGIWNDRNNWCFNQQLTLISARSKWVLQYLQEVQS-----------TKSSSMPKSKSGITRPSSAPSCINIFVDAA

Query:  CSEQEGRNGVGVAFRANVGRCLVAMATKHDGYLNSTCSEAVALYDGLKLASSLEFSQVHFFSDSLSLVAMVNGFQEPTSDIKNYIEDI
          +Q G  G G  F+      L +   +  G ++   +E  AL   LK     +FS    FSD L+LV+ VNG  +  S +   +  I
Subjt:  CSEQEGRNGVGVAFRANVGRCLVAMATKHDGYLNSTCSEAVALYDGLKLASSLEFSQVHFFSDSLSLVAMVNGFQEPTSDIKNYIEDI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCCGAGAGACCAACCTCATCCTTGGCGGAGGGAGACAGAAAATGGTGGAAAGGCCTATGGGGAGTAAATTTACCGACGAAGTGCCCGAGAGCACAAAAACTGTG
GAATATCTTGATTTCGGGGATCGTGGATGGATTAGATAGAAGTTGGTCGATACAAGATATTTGGATTTATTTGTTTAGGAACTATAACACTAAGAGCTTTGAACTGTTGA
GTGTTGGTGCATGGGGCATCTGGAATGACCGGAATAATTGGTGTTTTAACCAACAGTTGACTCTGATCTCTGCTAGATCGAAATGGGTACTACAGTACCTACAGGAAGTC
CAATCTACAAAGTCATCATCGATGCCCAAATCTAAGAGTGGCATCACTAGGCCTTCCTCGGCCCCATCTTGCATAAACATTTTTGTGGATGCAGCGTGTAGTGAACAGGA
AGGAAGGAATGGTGTGGGAGTGGCTTTTCGAGCCAATGTCGGGCGTTGTTTGGTGGCCATGGCCACAAAGCATGATGGTTACTTAAATTCGACATGCTCTGAAGCAGTAG
CGTTGTATGATGGTTTGAAATTAGCTTCCAGTCTGGAATTTTCTCAAGTTCACTTCTTCTCGGATTCATTGTCATTGGTAGCAATGGTGAATGGATTCCAGGAGCCTACA
TCAGACATAAAAAATTACATCGAAGATATCCACGCTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCCGAGAGACCAACCTCATCCTTGGCGGAGGGAGACAGAAAATGGTGGAAAGGCCTATGGGGAGTAAATTTACCGACGAAGTGCCCGAGAGCACAAAAACTGTG
GAATATCTTGATTTCGGGGATCGTGGATGGATTAGATAGAAGTTGGTCGATACAAGATATTTGGATTTATTTGTTTAGGAACTATAACACTAAGAGCTTTGAACTGTTGA
GTGTTGGTGCATGGGGCATCTGGAATGACCGGAATAATTGGTGTTTTAACCAACAGTTGACTCTGATCTCTGCTAGATCGAAATGGGTACTACAGTACCTACAGGAAGTC
CAATCTACAAAGTCATCATCGATGCCCAAATCTAAGAGTGGCATCACTAGGCCTTCCTCGGCCCCATCTTGCATAAACATTTTTGTGGATGCAGCGTGTAGTGAACAGGA
AGGAAGGAATGGTGTGGGAGTGGCTTTTCGAGCCAATGTCGGGCGTTGTTTGGTGGCCATGGCCACAAAGCATGATGGTTACTTAAATTCGACATGCTCTGAAGCAGTAG
CGTTGTATGATGGTTTGAAATTAGCTTCCAGTCTGGAATTTTCTCAAGTTCACTTCTTCTCGGATTCATTGTCATTGGTAGCAATGGTGAATGGATTCCAGGAGCCTACA
TCAGACATAAAAAATTACATCGAAGATATCCACGCTTTTTGA
Protein sequenceShow/hide protein sequence
MDSERPTSSLAEGDRKWWKGLWGVNLPTKCPRAQKLWNILISGIVDGLDRSWSIQDIWIYLFRNYNTKSFELLSVGAWGIWNDRNNWCFNQQLTLISARSKWVLQYLQEV
QSTKSSSMPKSKSGITRPSSAPSCINIFVDAACSEQEGRNGVGVAFRANVGRCLVAMATKHDGYLNSTCSEAVALYDGLKLASSLEFSQVHFFSDSLSLVAMVNGFQEPT
SDIKNYIEDIHAF