CuGenDBv2

Gene ID	Tan0003504
Organism	Trichosanthes anguina (Snake gourd v1)
Description	50S ribosomal protein L20
Genome location	LG05:4242180..4243350
RNA-Seq Expression	Tan0003504
Synteny	Tan0003504
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR005813 - Ribosomal protein L20 IPR035566 - Ribosomal protein L20, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7035310.1 rplT, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.4e-62

97.6

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KENIQLNRKVLSELSMHEPYSFKSLVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISIVV
        ISRNAFPGNKNVVFPPKKDGIS+V+
Subjt:  ISRNAFPGNKNVVFPPKKDGISIVV

XP_022149620.1 uncharacterized protein LOC111018005 [Momordica charantia]

4.1e-62

96.8

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKEN+QLNRKVLSE+SMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISIVV
        ISRNAFPGNKNVV PPKKDGISIVV
Subjt:  ISRNAFPGNKNVVFPPKKDGISIVV

XP_022947351.1 uncharacterized protein LOC111451238 [Cucurbita moschata]

2.4e-62

97.6

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL+GVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISIVV
        ISRNAFPGNKNVVFPPKKDGIS+V+
Subjt:  ISRNAFPGNKNVVFPPKKDGISIVV

XP_022985864.1 uncharacterized protein LOC111483787 [Cucurbita maxima]

7.1e-62

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISIVV
        ISRNAFPGNKNVVFPPKKD +S+VV
Subjt:  ISRNAFPGNKNVVFPPKKDGISIVV

XP_023007267.1 uncharacterized protein LOC111499805 [Cucurbita maxima]

4.9e-63

98.4

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISIVV
        ISRNAFPGNKNVVFPPKKDGIS+V+
Subjt:  ISRNAFPGNKNVVFPPKKDGISIVV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D684 50S ribosomal protein L20

2.0e-62

96.8

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKEN+QLNRKVLSE+SMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISIVV
        ISRNAFPGNKNVV PPKKDGISIVV
Subjt:  ISRNAFPGNKNVVFPPKKDGISIVV

A0A6J1FUI3 50S ribosomal protein L20

4.5e-62

95.2

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISIVV
        ISRNAFPGNKNVVFPPKKD +S++V
Subjt:  ISRNAFPGNKNVVFPPKKDGISIVV

A0A6J1G662 50S ribosomal protein L20

1.2e-62

97.6

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL+GVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISIVV
        ISRNAFPGNKNVVFPPKKDGIS+V+
Subjt:  ISRNAFPGNKNVVFPPKKDGISIVV

A0A6J1JCG1 50S ribosomal protein L20

3.4e-62

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISIVV
        ISRNAFPGNKNVVFPPKKD +S+VV
Subjt:  ISRNAFPGNKNVVFPPKKDGISIVV

A0A6J1KY75 50S ribosomal protein L20

2.4e-63

98.4

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISIVV
        ISRNAFPGNKNVVFPPKKDGIS+V+
Subjt:  ISRNAFPGNKNVVFPPKKDGISIVV

SwissProt top hits

e value

%identity

Alignment

B6IPJ8 50S ribosomal protein L20

1.3e-31

63.37

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRN
        K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG RLHG+ Y  FMHGL +  I+++RKVLS+++  EP SFK+LV+ ++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRN

Query:  A
        A
Subjt:  A

Q2GHR2 50S ribosomal protein L20

1.1e-28

59.41

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRN
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ Y +F+HGL   N+ LNRKVL++++++    FK +VD+ + 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRN

Query:  A
        A
Subjt:  A

Q3YSX0 50S ribosomal protein L20

1.3e-29

61.39

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRN
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ Y +F+HGL   NI LNRKVL++++++   +FK +VDI++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRN

Query:  A
        A
Subjt:  A

Q5FH69 50S ribosomal protein L20

1.4e-28

57.43

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRN
        K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  R +G+ Y +F++GL   NI LNRK+L+++++H   +FK +VD+++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRN

Query:  A
        A
Subjt:  A

Q5HC39 50S ribosomal protein L20

1.4e-28

57.43

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRN
        K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  R +G+ Y +F++GL   NI LNRK+L+++++H   +FK +VD+++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRN

Query:  A
        A
Subjt:  A

Arabidopsis top hits

e value

%identity

Alignment

AT1G16740.1 Ribosomal protein L20

1.8e-55

83.87

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
        MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+R HGVNYGNF+HGLMKENIQLNRKVLSELSMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISIV
        +SR +FPGNKNVV   +K  IS +
Subjt:  ISRNAFPGNKNVVFPPKKDGISIV

ATCG00660.1 ribosomal protein L20

8.7e-10

38.2

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Query:  KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGV--NYGNFMHGLMKENIQLNRKVLSELSM
        + K+   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA     GV  +Y  F+H L K+ + LNRK+L+++++
Subjt:  KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGV--NYGNFMHGLMKENIQLNRKVLSELSM

Sequences

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CDS sequence

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ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTCAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGGGTGGAGAAGGCTCTCCAGTATTCCTATAG
GGACCGGCGCAATAAGAAGCGGGACATGCGCTCCCTTTGGATACAACGCATCAATGCTGGCACACGCCTTCATGGGGTAAATTATGGCAATTTCATGCATGGGCTGATGA
AGGAGAACATTCAACTAAATAGAAAAGTATTATCAGAGCTCTCAATGCACGAACCTTACAGTTTCAAGTCCCTGGTAGACATCTCTCGAAATGCATTTCCTGGAAACAAG
AATGTAGTGTTCCCTCCAAAGAAGGATGGCATTTCCATAGTTGTTTAA

mRNA sequence

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Protein sequence

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MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNK
NVVFPPKKDGISIVV

Tan0003504 (gene) of Snake gourd v1 genome