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Tan0003512 (gene) of Snake gourd v1 genome

Gene IDTan0003512
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionPMD domain-containing protein
Genome locationLG01:58399465..58401786
RNA-Seq ExpressionTan0003512
SyntenyTan0003512
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047478.1 hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]5.4e-2650Show/hide
Query:  MVHFVEHISSGRKYLVILKDRAQPLKSGINLLAEKPLTDPFSPPWADLHPDFTL-GLTTEKLLNSGDKVWILQSSIHDKFHNRSLELTLGRRLIEGETRW
        MV+F E   SG ++LVIL DR QP + G++L+ EKP    F+  W  L  +  L  L+ E  L+ G   W+LQSSIH++  N    LTLG+RLIEG+TRW
Subjt:  MVHFVEHISSGRKYLVILKDRAQPLKSGINLLAEKPLTDPFSPPWADLHPDFTL-GLTTEKLLNSGDKVWILQSSIHDKFHNRSLELTLGRRLIEGETRW

Query:  NPVMKIPGEFTFISCYWEWLEFLV
          V K+PGEF F  CYWEWLE +V
Subjt:  NPVMKIPGEFTFISCYWEWLEFLV
KAA0053734.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.4e-2650.81Show/hide
Query:  MVHFVEHISSGRKYLVILKDRAQPLKSGINLLAEKPLTDPFSPPWADLHPDFTL-GLTTEKLLNSGDKVWILQSSIHDKFHNRSLELTLGRRLIEGETRW
        MV+F E   SG ++LVIL DR QP + G++L+ EKP    F+  W  L  +  L  L+ E  L+ G   WILQSSIH++  N    LTLG+RLIEG+TRW
Subjt:  MVHFVEHISSGRKYLVILKDRAQPLKSGINLLAEKPLTDPFSPPWADLHPDFTL-GLTTEKLLNSGDKVWILQSSIHDKFHNRSLELTLGRRLIEGETRW

Query:  NPVMKIPGEFTFISCYWEWLEFLV
          V K+PGEF F  CYWEWLE +V
Subjt:  NPVMKIPGEFTFISCYWEWLEFLV
KAA0057574.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.1e-2650Show/hide
Query:  MVHFVEHISSGRKYLVILKDRAQPLKSGINLLAEKPLTDPFSPPWADLHPDFTL-GLTTEKLLNSGDKVWILQSSIHDKFHNRSLELTLGRRLIEGETRW
        MV+F E   SG ++LVIL DR QP + G++L+ EKP    F+  W  L  +  L  L+ E  L+ G   W+LQSSIH++  N    LTLG+RLIEG+TRW
Subjt:  MVHFVEHISSGRKYLVILKDRAQPLKSGINLLAEKPLTDPFSPPWADLHPDFTL-GLTTEKLLNSGDKVWILQSSIHDKFHNRSLELTLGRRLIEGETRW

Query:  NPVMKIPGEFTFISCYWEWLEFLV
          V K+PGEF F  CYWEWLE +V
Subjt:  NPVMKIPGEFTFISCYWEWLEFLV
TYK00336.1 hypothetical protein E5676_scaffold1923G00140 [Cucumis melo var. makuwa]1.8e-2651.61Show/hide
Query:  MVHFVEHISSGRKYLVILKDRAQPLKSGINLLAEKPLTDPFSPPWADLHPDFTL-GLTTEKLLNSGDKVWILQSSIHDKFHNRSLELTLGRRLIEGETRW
        MV+F E   SG ++LVIL DR QP + G++L+ EKP    F   W  L  +  L  L+ E  L  G   W+LQSSIH++ HN S  LTLG+RLIEG+TRW
Subjt:  MVHFVEHISSGRKYLVILKDRAQPLKSGINLLAEKPLTDPFSPPWADLHPDFTL-GLTTEKLLNSGDKVWILQSSIHDKFHNRSLELTLGRRLIEGETRW

Query:  NPVMKIPGEFTFISCYWEWLEFLV
          V K+PGEF F  CYWEWLE +V
Subjt:  NPVMKIPGEFTFISCYWEWLEFLV
TYK20969.1 hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa]5.4e-2650.81Show/hide
Query:  MVHFVEHISSGRKYLVILKDRAQPLKSGINLLAEKPLTDPFSPPWADLHPDFTL-GLTTEKLLNSGDKVWILQSSIHDKFHNRSLELTLGRRLIEGETRW
        MV+F E   SG ++LVIL DR QP + G++L+ EKP    F+  W  L  +  L  L+ E  L+ G   W+LQSSIH +  N    LTLG+RLIEG+TRW
Subjt:  MVHFVEHISSGRKYLVILKDRAQPLKSGINLLAEKPLTDPFSPPWADLHPDFTL-GLTTEKLLNSGDKVWILQSSIHDKFHNRSLELTLGRRLIEGETRW

Query:  NPVMKIPGEFTFISCYWEWLEFLV
          V K+PGEF FI CYWEWLE +V
Subjt:  NPVMKIPGEFTFISCYWEWLEFLV
TrEMBL top hitse value%identityAlignment
A0A5A7TX42 Uncharacterized protein2.6e-2650Show/hide
Query:  MVHFVEHISSGRKYLVILKDRAQPLKSGINLLAEKPLTDPFSPPWADLHPDFTL-GLTTEKLLNSGDKVWILQSSIHDKFHNRSLELTLGRRLIEGETRW
        MV+F E   SG ++LVIL DR QP + G++L+ EKP    F+  W  L  +  L  L+ E  L+ G   W+LQSSIH++  N    LTLG+RLIEG+TRW
Subjt:  MVHFVEHISSGRKYLVILKDRAQPLKSGINLLAEKPLTDPFSPPWADLHPDFTL-GLTTEKLLNSGDKVWILQSSIHDKFHNRSLELTLGRRLIEGETRW

Query:  NPVMKIPGEFTFISCYWEWLEFLV
          V K+PGEF F  CYWEWLE +V
Subjt:  NPVMKIPGEFTFISCYWEWLEFLV
A0A5A7U8X8 PMD domain-containing protein2.6e-2650.81Show/hide
Query:  MVHFVEHISSGRKYLVILKDRAQPLKSGINLLAEKPLTDPFSPPWADLHPDFTL-GLTTEKLLNSGDKVWILQSSIHDKFHNRSLELTLGRRLIEGETRW
        MV+F E   SG ++LVIL DR QP + G++L+ EKP    F+  W  L  +  L  L+ E  L+ G   W+LQSSIH +  N    LTLG+RLIEG+TRW
Subjt:  MVHFVEHISSGRKYLVILKDRAQPLKSGINLLAEKPLTDPFSPPWADLHPDFTL-GLTTEKLLNSGDKVWILQSSIHDKFHNRSLELTLGRRLIEGETRW

Query:  NPVMKIPGEFTFISCYWEWLEFLV
          V K+PGEF FI CYWEWLE +V
Subjt:  NPVMKIPGEFTFISCYWEWLEFLV
A0A5A7UR46 Putative mitochondrial protein2.0e-2650Show/hide
Query:  MVHFVEHISSGRKYLVILKDRAQPLKSGINLLAEKPLTDPFSPPWADLHPDFTL-GLTTEKLLNSGDKVWILQSSIHDKFHNRSLELTLGRRLIEGETRW
        MV+F E   SG ++LVIL DR QP + G++L+ EKP    F+  W  L  +  L  L+ E  L+ G   W+LQSSIH++  N    LTLG+RLIEG+TRW
Subjt:  MVHFVEHISSGRKYLVILKDRAQPLKSGINLLAEKPLTDPFSPPWADLHPDFTL-GLTTEKLLNSGDKVWILQSSIHDKFHNRSLELTLGRRLIEGETRW

Query:  NPVMKIPGEFTFISCYWEWLEFLV
          V K+PGEF F  CYWEWLE +V
Subjt:  NPVMKIPGEFTFISCYWEWLEFLV
A0A5D3BQ12 PMD domain-containing protein8.9e-2751.61Show/hide
Query:  MVHFVEHISSGRKYLVILKDRAQPLKSGINLLAEKPLTDPFSPPWADLHPDFTL-GLTTEKLLNSGDKVWILQSSIHDKFHNRSLELTLGRRLIEGETRW
        MV+F E   SG ++LVIL DR QP + G++L+ EKP    F   W  L  +  L  L+ E  L  G   W+LQSSIH++ HN S  LTLG+RLIEG+TRW
Subjt:  MVHFVEHISSGRKYLVILKDRAQPLKSGINLLAEKPLTDPFSPPWADLHPDFTL-GLTTEKLLNSGDKVWILQSSIHDKFHNRSLELTLGRRLIEGETRW

Query:  NPVMKIPGEFTFISCYWEWLEFLV
          V K+PGEF F  CYWEWLE +V
Subjt:  NPVMKIPGEFTFISCYWEWLEFLV
A0A5D3DCE5 PMD domain-containing protein2.6e-2650.81Show/hide
Query:  MVHFVEHISSGRKYLVILKDRAQPLKSGINLLAEKPLTDPFSPPWADLHPDFTL-GLTTEKLLNSGDKVWILQSSIHDKFHNRSLELTLGRRLIEGETRW
        MV+F E   SG ++LVIL DR QP + G++L+ EKP    F+  W  L  +  L  L+ E  L+ G   W+LQSSIH +  N    LTLG+RLIEG+TRW
Subjt:  MVHFVEHISSGRKYLVILKDRAQPLKSGINLLAEKPLTDPFSPPWADLHPDFTL-GLTTEKLLNSGDKVWILQSSIHDKFHNRSLELTLGRRLIEGETRW

Query:  NPVMKIPGEFTFISCYWEWLEFLV
          V K+PGEF FI CYWEWLE +V
Subjt:  NPVMKIPGEFTFISCYWEWLEFLV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTACACTTTGTCGAACATATCTCATCAGGACGGAAATATCTCGTCATTTTGAAAGATAGAGCTCAACCCCTTAAGAGTGGGATTAACCTATTAGCTGAAAAACCACT
TACCGACCCTTTTTCACCCCCATGGGCTGACTTGCATCCTGATTTTACGCTCGGACTTACAACAGAAAAACTCCTGAACTCTGGTGATAAAGTATGGATTCTACAATCTT
CCATCCATGACAAATTTCATAATCGAAGTCTAGAGCTAACCTTGGGGCGTCGTTTGATTGAAGGCGAAACTCGTTGGAACCCCGTGATGAAGATACCTGGGGAATTCACC
TTCATTTCCTGTTATTGGGAGTGGTTGGAGTTTCTGGTTTCATATTATATGATAATCTCATCGAAGAATGAACAAGGGTCCACTCCAAAGGTTGATGCCCATTTGGTGGG
TAGTGTAACTCCTCCTCCAGCCCGCTCCAAACTACCGAAGCGTACTGGGGGTAGTCACGGTGGCAAAAAGATACGTTTACCCGAAGAGGATGCCACCGCCCCTGAACTAG
ATGATTCAGCGCATGGTGAATCAAGCCATAGTAGTACGCAAGATCGTTGTTGGAAACGAGTGTCAAAGAAGCCCAAAGTTTCTCTCAATAATATTGATGCAATTTTTGAA
GGGGTCGCCAGCGCCTCACAACTTCCTAGTCAGCCTTTGCTTCTGTCCCCTCTAGATGACCTTCCTCATGAAACTGAGGGAGAACATAGTGAAGAGCCACTAACGGACCC
TAACATTATCGACAATGCTACCAAGCTTGCGATTGAAAACTCTCATCGACCTTCCCAAGCTCCTGGAGACACCCATCGAAGACAAGAGAAACTTACTACTGGAGGTCCTG
AAGTTTCTCGCTTTGTGCTCGCGTTAGTGATTTCCGATTTACAAGCGAGCGAGCAACCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTACACTTTGTCGAACATATCTCATCAGGACGGAAATATCTCGTCATTTTGAAAGATAGAGCTCAACCCCTTAAGAGTGGGATTAACCTATTAGCTGAAAAACCACT
TACCGACCCTTTTTCACCCCCATGGGCTGACTTGCATCCTGATTTTACGCTCGGACTTACAACAGAAAAACTCCTGAACTCTGGTGATAAAGTATGGATTCTACAATCTT
CCATCCATGACAAATTTCATAATCGAAGTCTAGAGCTAACCTTGGGGCGTCGTTTGATTGAAGGCGAAACTCGTTGGAACCCCGTGATGAAGATACCTGGGGAATTCACC
TTCATTTCCTGTTATTGGGAGTGGTTGGAGTTTCTGGTTTCATATTATATGATAATCTCATCGAAGAATGAACAAGGGTCCACTCCAAAGGTTGATGCCCATTTGGTGGG
TAGTGTAACTCCTCCTCCAGCCCGCTCCAAACTACCGAAGCGTACTGGGGGTAGTCACGGTGGCAAAAAGATACGTTTACCCGAAGAGGATGCCACCGCCCCTGAACTAG
ATGATTCAGCGCATGGTGAATCAAGCCATAGTAGTACGCAAGATCGTTGTTGGAAACGAGTGTCAAAGAAGCCCAAAGTTTCTCTCAATAATATTGATGCAATTTTTGAA
GGGGTCGCCAGCGCCTCACAACTTCCTAGTCAGCCTTTGCTTCTGTCCCCTCTAGATGACCTTCCTCATGAAACTGAGGGAGAACATAGTGAAGAGCCACTAACGGACCC
TAACATTATCGACAATGCTACCAAGCTTGCGATTGAAAACTCTCATCGACCTTCCCAAGCTCCTGGAGACACCCATCGAAGACAAGAGAAACTTACTACTGGAGGTCCTG
AAGTTTCTCGCTTTGTGCTCGCGTTAGTGATTTCCGATTTACAAGCGAGCGAGCAACCATAG
Protein sequenceShow/hide protein sequence
MVHFVEHISSGRKYLVILKDRAQPLKSGINLLAEKPLTDPFSPPWADLHPDFTLGLTTEKLLNSGDKVWILQSSIHDKFHNRSLELTLGRRLIEGETRWNPVMKIPGEFT
FISCYWEWLEFLVSYYMIISSKNEQGSTPKVDAHLVGSVTPPPARSKLPKRTGGSHGGKKIRLPEEDATAPELDDSAHGESSHSSTQDRCWKRVSKKPKVSLNNIDAIFE
GVASASQLPSQPLLLSPLDDLPHETEGEHSEEPLTDPNIIDNATKLAIENSHRPSQAPGDTHRRQEKLTTGGPEVSRFVLALVISDLQASEQP